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ORCIDMark J. Clement
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- affiliation: Brigham Young University, Provo, Utah, USA
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2020 – today
- 2023
[i2]Chetan Joshi, Lawry Sorenson, Ammon Wolfert, Mark J. Clement, Joseph Price, Kasey Buckles:
CENSUS-HWR: a large training dataset for offline handwriting recognition. CoRR abs/2305.16275 (2023)- 2022
- [c60]Eric Burdett, Stanley Fujimoto, Timothy Brown, Ammon Shurtz, Daniel Segrera
, Lawry Sorenson, Mark J. Clement, Joseph Price:
Active Transfer Learning for Handwriting Recognition. ICFHR 2022: 245-258 - 2020
- [c59]M. Stanley Fujimoto, Cole A. Lyman, Mark J. Clement:
Kcollections: A Fast and Efficient Library for K-mers. IPDPS Workshops 2020: 193-198
2010 – 2019
- 2019
- [c58]Cole A. Lyman, Mark J. Clement, Travis J. A. Craddock, Mary Fletcher, Nancy G. Klimas, Gordon Broderick:
Feedback Regulation of Immune Response to Maximum Exercise in Gulf War Illness. BCB 2019: 124-129 - [c57]Cole A. Lyman, Connor Anderson, Matthew C. Morris, Umesh K. Nandal, Marianna J. Martindale, Mark J. Clement, Gordon Broderick:
When the How Outweighs the What: the Pivotal Importance of Context. BIBM 2019: 2149-2156 - 2018
- [c56]Tanner D. Jensen, Kristi A. Bresciano, Emma Dallon, M. Stanley Fujimoto, Cole A. Lyman, Enoch Stewart, Joel Griffitts, Mark J. Clement:
The PepSeq Pipeline: Software for Antimicrobial Motif Discovery in Randomly-Generated Peptide Libraries. BCB 2018: 139-144 - 2017
- [j25]M. Stanley Fujimoto, Anton Suvorov, Nicholas O. Jensen, Mark J. Clement, Quinn Snell, Seth M. Bybee:
The OGCleaner: filtering false-positive homology clusters. Bioinform. 33(1): 125-127 (2017) - [c55]Masaki Stanley Fujimoto, Paul M. Bodily, Cole A. Lyman, Andrew J. Jacobsen, Quinn Snell, Mark J. Clement:
Modeling Global and local Codon Bias with Deep Language Models. BIBE 2017: 151-156 - [c54]M. Stanley Fujimoto, Cole A. Lyman, Anton Suvorov, Paul M. Bodily, Quinn Snell, Keith A. Crandall, Seth M. Bybee, Mark J. Clement:
Genome Polymorphism Detection Through Relaxed de Bruijn Graph Construction. BIBE 2017: 212-216 - [c53]Cole A. Lyman, M. Stanley Fujimoto, Anton Suvorov, Paul M. Bodily, Quinn Snell, Keith A. Crandall, Seth M. Bybee, Mark J. Clement:
Whole Genome Phylogenetic Tree Reconstruction Using Colored de Bruijn Graphs. BIBE 2017: 260-265 - [i1]Cole A. Lyman, M. Stanley Fujimoto, Anton Suvorov, Paul M. Bodily, Quinn Snell, Keith A. Crandall, Seth M. Bybee, Mark J. Clement:
Whole Genome Phylogenetic Tree Reconstruction Using Colored de Bruijn Graphs. CoRR abs/1709.00164 (2017) - 2016
- [j24]Paul M. Bodily, M. Stanley Fujimoto, Quinn Snell, Dan Ventura, Mark J. Clement:
ScaffoldScaffolder: solving contig orientation via bidirected to directed graph reduction. Bioinform. 32(1): 17-24 (2016) - [j23]M. Stanley Fujimoto, Anton Suvorov, Nicholas O. Jensen, Mark J. Clement, Seth M. Bybee:
Detecting false positive sequence homology: a machine learning approach. BMC Bioinform. 17: 101 (2016) - [j22]Paul M. Bodily, M. Stanley Fujimoto, Justin T. Page, Mark J. Clement, Mark T. W. Ebbert, Perry G. Ridge:
A novel approach for multi-SNP GWAS and its application in Alzheimer's disease. BMC Bioinform. 17(S-7): 268 (2016) - 2015
- [j21]Paul M. Bodily, M. Stanley Fujimoto, Cameron Ortega, Nozomu Okuda, Jared C. Price, Mark J. Clement, Quinn Snell:
Heterozygous genome assembly via binary classification of homologous sequence. BMC Bioinform. 16(S-7): S5 (2015) - 2014
- [j20]M. Stanley Fujimoto, Paul M. Bodily, Nozomu Okuda, Mark J. Clement, Quinn Snell:
Effects of error-correction of heterozygous next-generation sequencing data. BMC Bioinform. 15(S-7): S3 (2014) - [c52]Paul M. Bodily, Mark J. Clement, Quinn Snell, M. Stanley Fujimoto, Perry G. Ridge:
Haplotype-centered mapping for improved alignments and genetic association studies. BCB 2014: 499-505 - [c51]Matthew Seeley, Mark J. Clement, Christophe G. Giraud-Carrier, Quinn Snell, Paul M. Bodily, Stanley Fujimoto:
A structured approach to ensemble learning for Alzheimer's disease prediction. BCB 2014: 605-606 - 2013
- [j19]Changjin Hong, Nathan L. Clement, Spencer Clement, Saher Sue Hammoud, Douglas T. Carrell, Bradley R. Cairns, Quinn Snell, Mark J. Clement, William Evan Johnson:
Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data. BMC Bioinform. 14: 337 (2013) - [j18]James D. Jensen, Daniel M. Jensen, Mark J. Clement, Quinn O. Snell:
Probabilistic inference and ranking of gene regulatory pathways as a shortest-path problem. BMC Bioinform. 14(S-13): S5 (2013) - [c50]Paul M. Bodily, Mark J. Clement, Quinn Snell, Jared C. Price, Stanley Fujimoto, Nozomu Okuda:
Application of a MAX-CUT Heuristic to the Contig Orientation Problem in Genome Assembly. BCB 2013: 476 - [c49]Jared C. Price, Judson Ward, Joshua Udall, Quinn Snell, Mark J. Clement:
Identification and correction of substitution errors in Moleculo long reads. BIBE 2013: 1-4 - [c48]Matt Seeley, Mark J. Clement, Quinn Snell:
Feature identification and reduction for improved generalization accuracy in secondary-structure prediction. BIBE 2013: 1-4 - 2012
- [j17]Kenneth Sundberg, Mark J. Clement, Quinn Snell, Dan Ventura, Michael Whiting, Keith A. Crandall:
Phylogenetic search through partial tree mixing. BMC Bioinform. 13(S-13): S8 (2012) - [c47]Mark J. Clement, Quinn Snell, Srinivas Aluru, David A. Bader:
HiCOMB Introduction. IPDPS Workshops 2012: 663-664 - [c46]Nathan L. Clement, Brent A. Shepherd, Paul M. Bodily, Sukhbat Tumur-Ochir, Younghoon Gim, Quinn Snell, Mark J. Clement, W. Evan Johnson:
Parallel Pair-HMM SNP Detection. IPDPS Workshops 2012: 675-683 - 2011
- [c45]Nathan L. Clement, Mark J. Clement, Quinn Snell, W. Evan Johnson:
Parallel Mapping Approaches for GNUMAP. IPDPS Workshops 2011: 435-443 - 2010
- [j16]Kenneth Sundberg, Mark J. Clement, Quinn Snell:
On the use of cartographic projections in visualizing phylo-genetic tree space. Algorithms Mol. Biol. 5: 26 (2010) - [j15]Nathan L. Clement, Quinn Snell, Mark J. Clement, Peter C. Hollenhorst, Jahnvi Purwar, Barbara J. Graves, Bradley R. Cairns, W. Evan Johnson:
The GNUMAP algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing. Bioinform. 26(1): 38-45 (2010) - [j14]Kendell Clement, Nathaniel Gustafson, Amanda Berbert, Hyrum Carroll, Christopher Merris, Ammon Olsen, Mark J. Clement, Quinn Snell, Jared Allen, Randall J. Roper:
PathGen: a transitive gene pathway generator. Bioinform. 26(3): 423-425 (2010) - [c44]Mike Eagar, Mark J. Clement, Quinn Snell:
Spatially Indexing Sequences using Hashes. BIOCOMP 2010: 811-814 - [c43]Lukas Olson, Mark J. Clement, Quinn Snell:
The Impact of Equally-Optimal Pairwise Alignments. BIOCOMP 2010: 870-872
2000 – 2009
- 2009
- [j13]Hyrum Carroll, Adam R. Teichert, Jonathan Krein, Kenneth Sundberg, Quinn Snell, Mark J. Clement:
An open source phylogenetic search and alignment package. Int. J. Bioinform. Res. Appl. 5(3): 349-364 (2009) - [c42]Hyrum Carroll, Mark J. Clement, Quinn Snell, David A. McClellan:
ChemAlign: Biologically Relevant Multiple Sequence Alignment Using Physicochemical Properties. BIBM 2009: 70-73 - [c41]David Oviatt, Mark J. Clement, Quinn Snell, Kenneth Sundberg, Jared Allen, Randall J. Roper:
Inferring Gene Regulatory Networks from Asynchronous Microarray Data. BIOCOMP 2009: 142-147 - [c40]Timothy O'Connor, Kenneth Sundberg, Hyrum Carroll, Mark J. Clement, Quinn Snell:
Analysis of Long Branch Extraction. BIOCOMP 2009: 489-495 - [c39]Kenneth Sundberg, Mark J. Clement, Quinn Snell:
Visualizing Phylogenetic Treespace Using Cartographic Projections. WABI 2009: 321-332 - 2008
- [j12]Kenneth Sundberg, Timothy O'Connor, Hyrum Carroll, Mark J. Clement, Quinn Snell:
Parsimony accelerated Maximum Likelihood searches. Int. J. Comput. Biol. Drug Des. 1(1): 74-87 (2008) - [c38]Kenneth Sundberg, Daniel Ence, Daniel Wilcox, Quinn Snell, Mark J. Clement:
Genomic Scale Reconstruction of Gene Regulatory Networks from Microarray Data. BIOCOMP 2008: 68-71 - [c37]Kenneth Sundberg, Hyrum Carroll, Quinn Snell, Mark J. Clement:
Incomparability of Results Between Phylogenetic Search Programs. BIOCOMP 2008: 81-84 - 2007
- [j11]Hyrum Carroll, Wesley A. Beckstead, Timothy O'Connor, Mark T. W. Ebbert, Mark J. Clement, Quinn Snell, David A. McClellan:
DNA reference alignment benchmarks based on tertiary structure of encoded proteins. Bioinform. 23(19): 2648-2649 (2007) - [j10]Mark T. W. Ebbert, Wesley A. Beckstead, Timothy O'Connor, Mark J. Clement, David A. McClellan:
Pharmacogenomics: analysing SNPs in the CYP2D6 gene using amino acid properties. Int. J. Bioinform. Res. Appl. 3(4): 471-479 (2007) - [j9]Hyrum Carroll, Perry G. Ridge, Mark J. Clement, Quinn Snell:
Phylogenies scores for exhaustive searches and parsimony scores searches. Int. J. Bioinform. Res. Appl. 3(4): 493-503 (2007) - [c36]Kenneth Sundberg, Timothy O'Connor, Hyrum Carroll, Mark J. Clement, Quinn Snell:
Using Parsimony to Guide Maximum Likelihood Searches. BIBE 2007: 774-779 - [c35]Neha Rungta, Hyrum Carroll, Eric G. Mercer, Randall J. Roper, Mark J. Clement, Quinn Snell:
Analyzing Gene Relationships for Down Syndrome with Labeled Transition Graphs. FMCAD 2007: 216-219 - 2006
- [j8]Jesse Mecham, Mark J. Clement, Quinn Snell, Todd Freestone, Kevin D. Seppi, Keith A. Crandall:
Jumpstarting phylogenetic analysis. Int. J. Bioinform. Res. Appl. 2(1): 19-35 (2006) - [c34]Perry G. Ridge, Hyrum Carroll, Dan Sneddon, Mark J. Clement, Quinn Snell:
Large Grain Size Stochastic Optimization Alignment. BIBE 2006: 127-134 - 2004
- [c33]Casey T. Deccio, Mark J. Clement, Quinn Snell:
A Survivable Multi-agent Approach to Network Routing. Communications in Computing 2004: 9-13 - [c32]Reid Broadbent, Casey T. Deccio, Mark J. Clement:
Temporal Difference Learning in Network Routing. Communications in Computing 2004: 14-20 - [c31]Robert Ball, Mark J. Clement, Feng Huang, Quinn Snell, Casey T. Deccio:
Aggressive telecommunications overbooking ratios. IPCCC 2004: 31-38 - 2002
- [c30]Quinn Snell, Kevin Tew, Joseph J. Ekstrom, Mark J. Clement:
An Enterprise-Based Grid Resource Management System. HPDC 2002: 83- - [c29]Mark J. Clement, Quinn Snell, Peter Walker, David Posada, Keith A. Crandall:
TCS: Estimating Gene Genealogies. IPDPS 2002 - [c28]Quinn Snell, Mark J. Clement, David B. Jackson:
Preemption Based Backfill. JSSPP 2002: 24-37 - 2001
- [j7]André Turgeon, Quinn Snell, Mark J. Clement:
Object Placement Using Performance Surfaces. Clust. Comput. 4(3): 263-273 (2001) - [c27]John Jardine, Quinn Snell, Mark J. Clement:
Livelock Avoidance for Meta-Schedulers. HPDC 2001: 141-146 - [c26]David B. Jackson, Quinn Snell, Mark J. Clement:
Core Algorithms of the Maui Scheduler. JSSPP 2001: 87-102 - [c25]Zhi Li, John Higgins, Mark J. Clement:
Performance of Finite Field Arithmetic in an Elliptic Curve Cryptosystem. MASCOTS 2001: 249- - [c24]Ty van den Akker, Quinn Snell, Mark J. Clement:
The YGuard access control model: set-based access control. SACMAT 2001: 75-84 - 2000
- [c23]André Turgeon, Quinn Snell, Mark J. Clement:
Application Placement using Performance Surfaces. HPDC 2000: 229-236 - [c22]Quinn Snell, Mark J. Clement, David B. Jackson, Chad Gregory:
The Performance Impact of Advance Reservation Meta-scheduling. JSSPP 2000: 137-153 - [c21]Quinn Snell, Michael Whiting, Mark J. Clement, David McLaughlin:
Parallel Phylogenetic Inference. SC 2000: 35
1990 – 1999
- 1999
- [j6]Quinn Snell, Glenn Judd, Mark J. Clement:
The DOGMA Approach to Parallel and Distributed Computing. Parallel Distributed Comput. Pract. 2(2) (1999) - [j5]Mark J. Clement, Xian-He Sun:
Editorial. J. Supercomput. 13(3): 247 (1999) - [j4]Mark J. Clement, Glenn Judd, Bryan S. Morse, J. Kelly Flanagan:
Performance Surface Prediction for WAN-Based Clusters. J. Supercomput. 13(3): 267-281 (1999) - [c20]Shuling Yu, Mark J. Clement, Quinn Snell, Bryan S. Morse:
Parallel Algorithm and Processor Selection Based on Fuzzy Logic. HPCN Europe 1999: 440-449 - [c19]Kevin Butler, Mark J. Clement, Quinn Snell:
A Performance Broker for CORBA. HPDC 1999: 19-26 - [c18]Mark J. Clement, Quinn Snell, Glenn Judd, Michael Whiting:
High Performance Phylogenetic Inference. HPDC 1999: 335-336 - [c17]Mark J. Clement, Quinn Snell, Glenn Judd:
High Performance Computing for the Masses. IPPS/SPDP Workshops 1999: 781-796 - [c16]Glenn Judd, Mark J. Clement, Quinn Snell, Vladimir Getov:
Design Issues for Efficient Implementation of MPI in Java. Java Grande 1999: 58-65 - [c15]Mark J. Clement, Quinn Snell, David B. Jackson, David Ashton:
High Performance Scheduling for Windows NT. PDPTA 1999: 525-531 - 1998
- [j3]Glenn Judd, Mark J. Clement, Quinn Snell:
DOGMA: distributed object group metacomputing architecture. Concurr. Pract. Exp. 10(11-13): 977-983 (1998) - [c14]Mark J. Clement, Glenn Judd, Joy L. Peterson, Bryan S. Morse, J. Kelly Flanagan:
Performance Surface Prediction for WAN-Based Clusters. HICSS (7) 1998: 564-573 - [c13]Glenn Judd, Mark J. Clement, Quinn Snell:
The DOGMA Approach to High-Utilization Supercomputing. HPDC 1998: 64-70 - 1997
- [j2]Mark J. Clement, Michael J. Quinn:
Automated Performance Prediction for Scalable Parallel Computing. Parallel Comput. 23(10): 1405-1420 (1997) - [c12]John Williams, Mark J. Clement:
Distributed Polyphonic Music Synthesis. HPDC 1997: 20-29 - [c11]Johann Leichtl, Phyllis Crandall, Mark J. Clement:
Parallel Programming in Multi-Paradigm Clusters. HPDC 1997: 326-335 - [c10]Mark J. Clement, Bryan S. Morse, J. Kelly Flanagan, Wei Wei, Phyllis E. Crandall:
The Chordal Spoke ATM Interconnection Network. PDPTA 1997: 1259-1267 - 1996
- [c9]Phyllis Crandall, Eranti V. Sumithasri, Mark J. Clement:
Performance Comparison of Desktop Multiprocessing and Workstation Cluster Computing. HPDC 1996: 272-281 - [c8]Michael R. Steed, Mark J. Clement:
Performance Prediction of PVM Programs. IPPS 1996: 803-807 - [c7]Mark J. Clement, J. Kelly Flanagan, Michael R. Steed:
Cost Optimal Analysis for Workstation Clusters. PDPTA 1996: 1308-1318 - [c6]Mark J. Clement, Michael R. Steed, Phyllis E. Crandall:
Network Performance Modeling for PVM Clusters. SC 1996: 6 - 1995
- [j1]Mark J. Clement, Michael J. Quinn:
Overlapping Computations, Communications and I/O in parallel Sorting. J. Parallel Distributed Comput. 28(2): 162-172 (1995) - [c5]Mark J. Clement, Michael J. Quinn:
Multivariate statistical techniques for parallel performance prediction. HICSS (2) 1995: 446-455 - [c4]Mark J. Clement, Michael J. Quinn:
Symbolic performance prediction of scalable parallel programs. IPPS 1995: 635-639 - [c3]Wei Wei, Mark J. Clement, J. Kelly Flanagan:
The Round Table ATM Interconnection Network. PDPTA 1995: 445-454 - 1993
- [c2]Mark J. Clement, Michael J. Quinn:
Analytical performance prediction on multicomputers. SC 1993: 886-894 - 1992
- [c1]Gowri Ramanathan, Mark J. Clement, Phyllis Crandall:
Hyperweave: A Fault-Tolerant Expandable Interconnection Network. SPDP 1992: 479-482
Coauthor Index
Quinn Snell
aka: Quinn O. Snell
aka: Quinn O. Snell
[j25] [c55] [c54] [c53] [i1] [j24] [j21] [j20] [c52] [c51] [j19] [j18] [c50] [c49] [c48] [j17] [c47] [c46] [c45] [j16] [j15] [j14] [c44] [c43] [j13] [c42] [c41] [c40] [c39] [j12] [c38] [c37] [j11] [j9] [c36] [c35] [j8] [c34] [c33] [c31] [c30] [c29] [c28] [j7] [c27] [c26] [c24] [c23] [c22] [c21] [j6] [c20] [c19] [c18] [c17] [c16] [c15] [j3] [c13]
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