default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDAdam Liwo
Person information
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2024
[j44]Krzysztof M. Ocetkiewicz, Cezary Czaplewski, Henryk Krawczyk, Agnieszka G. Lipska, Adam Liwo, Jerzy Proficz, Adam K. Sieradzan
, Pawel Czarnul:
Multi-GPU UNRES for scalable coarse-grained simulations of very large protein systems. Comput. Phys. Commun. 298: 109112 (2024)- [j43]Mateusz Lesniewski, Maciej Pyrka, Cezary Czaplewski, Nguyen Truong Co, Yida Jiang, Zhou Gong, Chun Tang, Adam Liwo:
Assessment of Two Restraint Potentials for Coarse-Grained Chemical-Cross-Link-Assisted Modeling of Protein Structures. J. Chem. Inf. Model. 64(4): 1377-1393 (2024) - 2023
- [j42]Adam K. Sieradzan, Jordi Sans-Duñó, Emilia A. Lubecka, Cezary Czaplewski, Agnieszka G. Lipska, Henryk Leszczynski, Krzysztof M. Ocetkiewicz, Jerzy Proficz, Pawel Czarnul, Henryk Krawczyk, Adam Liwo:
Optimization of parallel implementation of UNRES package for coarse-grained simulations to treat large proteins. J. Comput. Chem. 44(4): 602-625 (2023) - [j41]Agnieszka G. Lipska, Adam K. Sieradzan, Cezary Czaplewski, Andrea D. Lipinska, Krzysztof M. Ocetkiewicz, Jerzy Proficz, Pawel Czarnul, Henryk Krawczyk, Adam Liwo:
Long-time scale simulations of virus-like particles from three human-norovirus strains. J. Comput. Chem. 44(16): 1470-1483 (2023) - 2022
- [j40]Emilia A. Lubecka, Adam Liwo:
A coarse-grained approach to NMR-data-assisted modeling of protein structures. J. Comput. Chem. 43(31): 2047-2059 (2022) - 2021
- [j39]Pawel Krupa, Agnieszka S. Karczynska, Magdalena A. Mozolewska, Adam Liwo, Cezary Czaplewski:
UNRES-Dock - protein-protein and peptide-protein docking by coarse-grained replica-exchange MD simulations. Bioinform. 37(11): 1613-1615 (2021) - [j38]Emilia A. Lubecka, Adam Liwo:
ESCASA: Analytical estimation of atomic coordinates from coarse-grained geometry for nuclear-magnetic-resonance-assisted protein structure modeling. I. Backbone and Hβ protons. J. Comput. Chem. 42(22): 1579-1589 (2021) - [j37]Mateusz Kogut, Zhou Gong, Chun Tang, Adam Liwo:
Pseudopotentials for coarse-grained cross-link-assisted modeling of protein structures. J. Comput. Chem. 42(29): 2054-2067 (2021) - 2020
- [j36]Agnieszka S. Karczynska, Karolina Zieba, Urszula Uciechowska, Magdalena A. Mozolewska, Pawel Krupa, Emilia A. Lubecka, Agnieszka G. Lipska, Celina Sikorska, Sergey A. Samsonov, Adam K. Sieradzan, Artur Gieldon, Adam Liwo, Rafal Slusarz, Magdalena Slusarz, Jooyoung Lee, Keehyoung Joo, Cezary Czaplewski:
Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13. J. Chem. Inf. Model. 60(3): 1844-1864 (2020)
2010 – 2019
- 2019
- [j35]Emilia A. Lubecka, Adam Liwo:
Introduction of a bounded penalty function in contact-assisted simulations of protein structures to omit false restraints. J. Comput. Chem. 40(25): 2164-2178 (2019) - 2018
- [j34]Adam K. Sieradzan, Artur Gieldon, Yanping Yin, Yi He, Harold A. Scheraga, Adam Liwo:
A new protein nucleic-acid coarse-grained force field based on the UNRES and NARES-2P force fields. J. Comput. Chem. 39(28): 2360-2370 (2018) - [j33]Pawel Krupa, Anna Halabis, Wioletta Zmudzinska, Stanislaw Oldziej, Harold A. Scheraga, Adam Liwo:
Correction to Maximum Likelihood Calibration of the UNRES Force Field for Simulation of Protein Structure and Dynamics. J. Chem. Inf. Model. 58(1): 206 (2018) - [j32]Cezary Czaplewski, Agnieszka S. Karczynska, Adam K. Sieradzan, Adam Liwo:
UNRES server for physics-based coarse-grained simulations and prediction of protein structure, dynamics and thermodynamics. Nucleic Acids Res. 46(Webserver-Issue): W304-W309 (2018) - [j31]Emilia A. Lubecka, Adam K. Sieradzan, Cezary Czaplewski, Pawel Krupa, Adam Liwo:
High Performance Computing with Coarse Grained Model of Biological Macromolecules. Supercomput. Front. Innov. 5(2): 63-75 (2018) - 2017
- [j30]Travis Johnston, Boyu Zhang, Adam Liwo, Silvia Crivelli, Michela Taufer:
In situ data analytics and indexing of protein trajectories. J. Comput. Chem. 38(16): 1419-1430 (2017) - [j29]Agnieszka S. Karczynska, Cezary Czaplewski, Pawel Krupa, Magdalena A. Mozolewska, Keehyoung Joo, Jooyoung Lee, Adam Liwo:
Ergodicity and model quality in template-restrained canonical and temperature/Hamiltonian replica exchange coarse-grained molecular dynamics simulations of proteins. J. Comput. Chem. 38(31): 2730-2746 (2017) - [j28]Pawel Krupa, Anna Halabis, Wioletta Zmudzinska, Stanislaw Oldziej, Harold A. Scheraga, Adam Liwo:
Maximum Likelihood Calibration of the UNRES Force Field for Simulation of Protein Structure and Dynamics. J. Chem. Inf. Model. 57(9): 2364-2377 (2017) - 2016
- [j27]Pawel Krupa, Magdalena A. Mozolewska, Marta Wisniewska, Yanping Yin, Yi He, Adam K. Sieradzan, Robert Ganzynkowicz, Agnieszka G. Lipska, Agnieszka S. Karczynska, Magdalena Slusarz, Rafal Slusarz, Artur Gieldon, Cezary Czaplewski, Dawid Jagiela, Bartlomiej Zaborowski, Harold A. Scheraga, Adam Liwo:
Performance of protein-structure predictions with the physics-based UNRES force field in CASP11. Bioinform. 32(21): 3270-3278 (2016) - [j26]Magdalena A. Mozolewska, Pawel Krupa, Bartlomiej Zaborowski, Adam Liwo, Jooyoung Lee, Keehyoung Joo, Cezary Czaplewski:
Use of Restraints from Consensus Fragments of Multiple Server Models To Enhance Protein-Structure Prediction Capability of the UNRES Force Field. J. Chem. Inf. Model. 56(11): 2263-2279 (2016) - 2015
- [j25]Pawel Krupa, Magdalena A. Mozolewska, Keehyoung Joo, Jooyoung Lee, Cezary Czaplewski, Adam Liwo:
Prediction of Protein Structure by Template-Based Modeling Combined with the UNRES Force Field. J. Chem. Inf. Model. 55(6): 1271-1281 (2015) - [j24]Bartlomiej Zaborowski, Dawid Jagiela, Cezary Czaplewski, Anna Halabis, Agnieszka Lewandowska, Wioletta Zmudzinska, Stanislaw Oldziej, Agnieszka S. Karczynska, Christian Omieczynski, Tomasz K. Wirecki, Adam Liwo:
A Maximum-Likelihood Approach to Force-Field Calibration. J. Chem. Inf. Model. 55(9): 2050-2070 (2015) - [i1]Travis Johnston, Boyu Zhang, Adam Liwo, Silvia Crivelli, Michela Taufer:
It-Situ Data Analysis of Protein Folding Trajectories. CoRR abs/1510.08789 (2015) - 2010
- [j23]Urszula Kozlowska, Adam Liwo, Harold A. Scheraga:
Determination of side-chain-rotamer and side-chain and backbone virtual-bond-stretching potentials of mean force from AM1 energy surfaces of terminally-blocked amino-acid residues, for coarse-grained simulations of protein structure and folding. I. The method. J. Comput. Chem. 31(6): 1143-1153 (2010) - [j22]Urszula Kozlowska, Gia G. Maisuradze, Adam Liwo, Harold A. Scheraga:
Determination of side-chain-rotamer and side-chain and backbone virtual-bond-stretching potentials of mean force from AM1 energy surfaces of terminally-blocked amino-acid residues, for coarse-grained simulations of protein structure and folding. II. Results, comparison with statistical potentials, and implementation in the UNRES force field. J. Comput. Chem. 31(6): 1154-1167 (2010) - [j21]Maciej Maciejczyk, Aleksandar Spasic, Adam Liwo, Harold A. Scheraga:
Coarse-grained model of nucleic acid bases. J. Comput. Chem. 31(8): 1644-1655 (2010) - [c2]Stanislaw Oldziej, Cezary Czaplewski, Adam Liwo, Harold A. Scheraga:
Towards Temperature Dependent Coarse-grained Potential of Side-chain Interactions for Protein Folding Simulations. BIBE 2010: 263-266
2000 – 2009
- 2009
- [j20]Yi He, Yi Xiao, Adam Liwo, Harold A. Scheraga:
Exploring the parameter space of the coarse-grained UNRES force field by random search: Selecting a transferable medium-resolution force field. J. Comput. Chem. 30(13): 2127-2135 (2009) - [r1]Daniel R. Ripoll, Adam Liwo, Harold A. Scheraga:
Global Optimization in Protein Folding. Encyclopedia of Optimization 2009: 1392-1411 - 2005
- [j19]Joanna Makowska, Mariusz Makowski, Adam Liwo, Lech Chmurzynski:
Theoretical calculations of homoconjugation equilibrium constants in systems modeling acid-base interactions in side chains of biomolecules using the potential of mean force. J. Comput. Chem. 26(3): 235-242 (2005) - 2002
- [j18]Harold A. Scheraga, Jaroslaw Pillardy, Adam Liwo, Jooyoung Lee, Cezary Czaplewski, Daniel R. Ripoll, William J. Wedemeyer, Yelena A. Arnautova:
Evolution of physics-based methodology for exploring the conformational energy landscape of proteins. J. Comput. Chem. 23(1): 28-34 (2002) - [j17]Rajmund Kazmierkiewicz, Adam Liwo, Harold A. Scheraga:
Energy-based reconstruction of a protein backbone from its -carbon trace by a Monte-Carlo method. J. Comput. Chem. 23(7): 715-723 (2002) - [j16]Maciej Bobrowski, Adam Liwo, Stanislaw Oldziej, Danuta Jeziorek, Tadeusz Ossowski:
Ab initio study of the mechanism of singlet-dioxygen addition to hydroxyaromatic compounds: Negative evidence for the involvement of peroxa and endoperoxide intermediates. J. Comput. Chem. 23(11): 1076-1089 (2002) - 2000
- [c1]Adam Liwo, Jaroslaw Pillardy, Cezary Czaplewski, Jooyoung Lee, Daniel R. Ripoll, Malgorzata Groth, Sylwia Rodziewicz-Motowidlo, Rajmund Kazmierkiewicz, Ryszard J. Wawak, Stanislaw Oldziej, Harold A. Scheraga:
UNRES: a united-residue force field for energy-based prediction of protein structure - orgin and significance of multibody terms. RECOMB 2000: 193-200
1990 – 1999
- 1999
- [j15]Harold A. Scheraga, Jooyoung Lee, Jaroslaw Pillardy, Yuan-Jie Ye, Adam Liwo, Daniel R. Ripoll:
Surmounting the Multiple-Minima Problem in Protein Folding. J. Glob. Optim. 15(3): 235-260 (1999) - 1998
- [j14]Adam Liwo, Rajmund Kazmierkiewicz, Cezary Czaplewski, Malgorzata Groth, Stanislaw Oldziej, Ryszard J. Wawak, Shelly Rackovsky, Matthew R. Pincus, Harold A. Scheraga:
United-residue force field for off-lattice protein-structure simulations: III. Origin of backbone hydrogen-bonding cooperativity in united-residue potentials. J. Comput. Chem. 19(3): 259-276 (1998) - 1997
- [j13]Adam Liwo, Piotr Skurski, Stanislaw Oldziej, Leszek Lankiewicz, Joanna Malicka, Wieslaw Wiczk:
A New Approach to the Resolution of the Excitation-emission Spectra of Multicomponent Systems. Comput. Chem. 21(2): 89-95 (1997) - [j12]Adam Liwo, Stanislaw Oldziej, Matthew R. Pincus, Ryszard J. Wawak, Shelly Rackovsky, Harold A. Scheraga:
A united-residue force field for off-lattice protein-structure simulations. I. Functional forms and parameters of long-range side-chain interaction potentials from protein crystal data. J. Comput. Chem. 18(7): 849-873 (1997) - [j11]Adam Liwo, Matthew R. Pincus, Ryszard J. Wawak, Shelly Rackovsky, Stanislaw Oldziej, Harold A. Scheraga:
A united-residue force field for off-lattice protein-structure simulations. II. Parameterization of short-range interactions and determination of weights of energy terms by Z-score optimization. J. Comput. Chem. 18(7): 874-887 (1997) - [j10]Adam Liwo, Dariusz Dyl, Danuta Jeziorek, Magorzata Nowacka, Tadeusz Ossowski, Wiesaw Wonicki:
MCSCF study of singlet oxygen addition to ethenol - a model of photooxidation reactions of unsaturated and aromatic compounds bearing hydroxy groups. J. Comput. Chem. 18(13): 1668-1681 (1997) - 1995
- [j9]Daniel R. Ripoll, Marcia S. Pottle, Kenneth D. Gibson, Harold A. Scheraga, Adam Liwo:
Implementation of the ECEPP Algorithm, the Monte Carlo Minimization Method, and the Electrostatically Driven Monte Carlo Method on the Kendall Square Research KSR1 Computer. J. Comput. Chem. 16(9): 1153-1163 (1995) - 1993
- [j8]Monika Tarnowska, Adam Liwo, Mark D. Shenderovich, Inta Liepina, Alexander Golbraikh, Zbigniew Grzonka, Anna Tempczyk:
A molecular mechanics study of the effect of substitution in position 1 on the conformational space of the oxytocin/vasopressin ring. J. Comput. Aided Mol. Des. 7(6): 699-720 (1993) - 1992
- [j7]Adam Liwo, Monika Tarnowska, Zbigniew Grzonka, Anna Tempczyk:
Modified Free-Wilson Method for the Analysis of Biological Activity Data. Comput. Chem. 16(1): 1-9 (1992)
1980 – 1989
- 1989
- [j6]Adam Liwo, Anna Tempczyk, Zbigniew Grzonka:
Molecular mechanics calculations on deaminooxytocin and on deamino-arginine-vasopressin and its analogues. J. Comput. Aided Mol. Des. 2(4): 281-309 (1989) - [j5]Adam Liwo, Anna Tempczyk, Zbigniew Grzonka:
Theoretical studies of the mechanism of the action of the neurohypophyseal hormones. I. Molecular electrostatic potential (MEP) and molecular electrostatic field (MEF) maps of some vasopressin analogues. J. Comput. Aided Mol. Des. 3(3): 261-284 (1989) - 1988
- [j4]Jaroslaw Kostrowicki, Adam Liwo, Krzysztof Sokolowski:
A comparative study on some methods for computing equilibrium concentrations. Comput. Chem. 12(4): 293-299 (1988) - 1987
- [j3]Jaroslaw Kostrowicki, Adam Liwo:
A general method for the determination of the stoichiometry of unknown species in multicomponent systems from physicochemical measurements. Comput. Chem. 11(3): 195-210 (1987) - 1984
- [j2]Jaroslaw Kostrowicki, Adam Liwo:
DECFAM - A new computer oriented algorithm for the determination of equilibrium constants from potentionmetric and/or spectrophotometric measurements - I: Basic principles of the method and calculations of equilibrium concentrations. Comput. Chem. 8(2): 91-99 (1984) - [j1]Jaroslaw Kostrowicki, Adam Liwo:
DECFAM - A new computer oriented algorithm for the determination of equilibrium constants from potentiometric and/or spectrophotometric measurements - II: Methods based on analytical expressions. Comput. Chem. 8(2): 101-105 (1984)
Coauthor Index
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from 
to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the 
of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from 
, 
, and 
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from 
.
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-10-07 22:24 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
