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ORCIDMichela Taufer
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- affiliation: University of Tennesee, Knoxville, Knoxville, TN, USA
- affiliation: University of Delaware, USA
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2020 – today
- 2025
[j56]Stefano Markidis, Michela Taufer, Lucio Grandinetti:
Special Collection on Advances in Quantum Computing: Methods, Algorithms, and Systems. Future Gener. Comput. Syst. 163: 107503 (2025)- [j55]Michela Taufer:
Recognition of Best Paper, Outstanding Editors, and Reviewers for Future Generation Computer Systems in 2024. Future Gener. Comput. Syst. 171: 107854 (2025) - 2024
- [j54]Michela Taufer
:
Mirror, Mirror on the Wall, What is the Best Topology of Them All? Commun. ACM 67(12): 96 (2024) - [j53]Michela Taufer, Daniel Milroy, Todd Gamblin, Andrew Jones, Bill Magro, Heidi Poxon, Seetharami R. Seelam:
HPC and Cloud Convergence Beyond Technical Boundaries: Strategies for Economic Sustainability, Standardization, and Data Accessibility. Computer 57(6): 128-136 (2024) - [j52]Michela Taufer:
Recognition of best paper, outstanding editors, and outstanding reviewers for Future Generation Computer Systems in 2023. Future Gener. Comput. Syst. 155: 463-464 (2024) - [j51]Connor Scully-Allison, Ian Lumsden, Katy Williams, Jesse Bartels, Michela Taufer, Stephanie Brink, Abhinav Bhatele, Olga Pearce, Katherine E. Isaacs:
Design Concerns for Integrated Scripting and Interactive Visualization in Notebook Environments. IEEE Trans. Vis. Comput. Graph. 30(9): 6572-6585 (2024) - [c134]Paula Olaya, Sophia Wen, Jay F. Lofstead, Michela Taufer:
PerSSD: Persistent, Shared, and Scalable Data with Node-Local Storage for Scientific Workflows in Cloud Infrastructure. IEEE Big Data 2024: 272-281 - [c133]Ian Lumsden, Hariharan Devarajan, Jack Marquez, Stephanie Brink, David Böhme, Olga Pearce, Jae-Seung Yeom, Michela Taufer:
Empirical Study of Molecular Dynamics Workflow Data Movement: DYAD vs. Traditional I/O Systems. IPDPS (Workshops) 2024: 543-553 - [c132]Nigel Tan, Kevin Assogba, Walter J. Ashworth, Befikir Bogale, Franck Cappello, M. Mustafa Rafique, Michela Taufer, Bogdan Nicolae:
Towards Affordable Reproducibility Using Scalable Capture and Comparison of Intermediate Multi-Run Results. Middleware 2024: 392-403 - [c131]Hariharan Devarajan, Ian Lumsden, Chen Wang, Konstantia Georgouli, Tom Scogland, Jae-Seung Yeom, Michela Taufer:
DYAD: Locality-aware Data Management for accelerating Deep Learning Training. SBAC-PAD 2024: 13-24 - [c130]Michela Taufer, Heberth F. Martinez, Aashish Panta, Paula Olaya, Jack Marquez, Amy Gooch, Giorgio Scorzelli, Valerio Pascucci:
Leveraging National Science Data Fabric Services to Train Data Scientists. SC Workshops 2024: 355-362 - [c129]Olga Pearce, Jason Burmark, Rich Hornung, Befikir Bogale, Ian Lumsden, Michael McKinsey, Dewi Yokelson, David Böhme, Stephanie Brink, Michela Taufer, Tom Scogland:
RAJA Performance Suite: Performance Portability Analysis with Caliper and Thicket. SC Workshops 2024: 1206-1218 - [i14]Michela Taufer, Valerio Pascucci, Christine R. Kirkpatrick, Ian T. Foster:
Sustainable Data Democratization: A Multifaceted Investment for an Equitable Future. CoRR abs/2408.14627 (2024) - 2023
- [j50]Tu Mai Anh Do, Loïc Pottier, Rafael Ferreira da Silva, Silvina Caíno-Lores, Michela Taufer, Ewa Deelman:
Performance assessment of ensembles of in situ workflows under resource constraints. Concurr. Comput. Pract. Exp. 35(20) (2023) - [j49]Michela Taufer, Heberth F. Martinez, Jakob Lüttgau, Lauren Whitnah, Giorgio Scorzelli, Pania Newell, Aashish Panta, Peer-Timo Bremer, Douglas Fils, Christine R. Kirkpatrick, Valerio Pascucci:
Enhancing Scientific Research with FAIR Digital Objects in the National Science Data Fabric. Comput. Sci. Eng. 25(5): 39-47 (2023) - [j48]Chaitanya Afle, Patrick R. Miles, Silvina Caíno-Lores, Collin D. Capano, Ingo Tews, Karan Vahi, Ewa Deelman, Michela Taufer, Duncan A. Brown:
Reproducing the Results for Neutron Star Interior Composition Explorer Observation of PSR J0030 + 0451. Comput. Sci. Eng. 25(6): 16-26 (2023) - [j47]Michela Taufer:
Recognition of Outstanding Future Generation Computer Systems Reviewers for 2022. Future Gener. Comput. Syst. 143: 420-421 (2023) - [j46]Naweiluo Zhou, Giorgio Scorzelli, Jakob Lüttgau, Rahul R. Kancharla, Joshua J. Kane, Robert Wheeler, Brendan P. Croom, Pania Newell, Valerio Pascucci, Michela Taufer:
Orchestration of materials science workflows for heterogeneous resources at large scale. Int. J. High Perform. Comput. Appl. 37(3-4): 260-271 (2023) - [j45]Sanjukta Bhowmick, Patrick Bell, Michela Taufer:
A Survey of Graph Comparison Methods with Applications to Nondeterminism in High-Performance Computing. Int. J. High Perform. Comput. Appl. 37(3-4): 306-327 (2023) - [j44]Paula Olaya, Dominic Kennedy, Ricardo M. Llamas, Leobardo Valera, Rodrigo Vargas, Jay F. Lofstead, Michela Taufer:
Building Trust in Earth Science Findings through Data Traceability and Results Explainability. IEEE Trans. Parallel Distributed Syst. 34(2): 704-717 (2023) - [c128]Paula Olaya, Jakob Lüttgau, Camila Roa, Ricardo M. Llamas, Rodrigo Vargas, Sophia Wen, I-Hsin Chung, Seetharami R. Seelam, Yoonho Park, Jay F. Lofstead, Michela Taufer:
Enabling Scalability in the Cloud for Scientific Workflows: An Earth Science Use Case. CLOUD 2023: 383-393 - [c127]Seoyoung An, Georgia Channing, Catherine D. Schuman, Michela Taufer:
VINARCH: A Visual Analytics Interactive Tool for Neural Network Archaeology. CLUSTER Workshops 2023: 50-51 - [c126]Nigel Tan, Scott V. Luedtke, Michela Taufer, Brian J. Albright:
Efficient Particle Tracing for Scalable Kinetic Plasma Simulation Analysis. CLUSTER Workshops 2023: 54-55 - [c125]Harshita Sahni, Hector Carrillo-Cabada, Ekaterina D. Kots, Silvina Caíno-Lores, Jack Marquez, Ewa Deelman, Michel A. Cuendet, Harel Weinstein, Michela Taufer, Trilce Estrada:
Online Boosted Gaussian Learners for In-Situ Detection and Characterization of Protein Folding States in Molecular Dynamics Simulations. e-Science 2023: 1-10 - [c124]Jakob Lüttgau, Giorgio Scorzelli, Valerio Pascucci, Michela Taufer:
Development of Large-Scale Scientific Cyberinfrastructure and the Growing Opportunity to Democratize Access to Platforms and Data. HCI (26) 2023: 378-389 - [c123]Stephanie Brink, Michael McKinsey, David Böhme, Connor Scully-Allison, Ian Lumsden, W. Daryl Hawkins, Treece Burgess, Vanessa Lama, Jakob Lüttgau, Katherine E. Isaacs, Michela Taufer, Olga Pearce:
Thicket: Seeing the Performance Experiment Forest for the Individual Run Trees. HPDC 2023: 281-293 - [c122]Camila Roa, Paula Olaya, Ricardo M. Llamas, Rodrigo Vargas, Michela Taufer:
GEOtiled: A Scalable Workflow for Generating Large Datasets of High-Resolution Terrain Parameters. HPDC 2023: 311-312 - [c121]Jakob Lüttgau, Heberth F. Martinez, Glenn Tarcea, Giorgio Scorzelli, Valerio Pascucci, Michela Taufer:
Studying Latency and Throughput Constraints for Geo-Distributed Data in the National Science Data Fabric. HPDC 2023: 325-326 - [c120]Georgia Channing, Ria Patel, Paula Olaya, Ariel Keller Rorabaugh, Osamu Miyashita, Silvina Caíno-Lores, Catherine D. Schuman, Florence Tama, Michela Taufer:
Composable Workflow for Accelerating Neural Architecture Search Using In Situ Analytics for Protein Classification. ICPP 2023: 1 - [c119]Nigel Tan, Jakob Lüttgau, Jack Marquez, Keita Teranishi, Nicolas M. Morales, Sanjukta Bhowmick, Franck Cappello, Michela Taufer, Bogdan Nicolae:
Scalable Incremental Checkpointing using GPU-Accelerated De-Duplication. ICPP 2023: 665-674 - [c118]Silvina Caíno-Lores, Michel A. Cuendet, Jack Marquez, Ekaterina D. Kots, Trilce Estrada, Ewa Deelman, Harel Weinstein, Michela Taufer:
Runtime Steering of Molecular Dynamics Simulations Through In Situ Analysis and Annotation of Collective Variables. PASC 2023: 21:1-21:11 - [c117]Michael Alexander, Sanjukta Bhowmick, Befikir Bogale, Gilberto Díaz, Anne C. Elster, Danielle A. Ellsworth, Carlos Jaime Barrios Hernández, Evan Jaffe, Jack Marquez, Alison Melton, Aashish Pandey, Suzanne Parete-Koon, Nigel Tan, Michela Taufer, Verónica G. Melesse Vergara, Lauren Whitnah, George K. Thiruvathukal:
EduHPC Lightning Talk Summary. SC Workshops 2023: 374-378 - [c116]Jakob Lüttgau, Heberth F. Martinez, Paula Olaya, Giorgio Scorzelli, Glenn Tarcea, Jay F. Lofstead, Christine R. Kirkpatrick, Valerio Pascucci, Michela Taufer:
NSDF-Services: Integrating Networking, Storage, and Computing Services into a Testbed for Democratization of Data Delivery. UCC 2023: 11 - [c115]Camila Roa, Mats Rynge, Paula Olaya, Karan Vahi, Todd Miller, James Griffioen, Shelley Knuth, John Goodhue, Dávid Hudák, Alana Romanella, Ricardo M. Llamas, Rodrigo Vargas, Miron Livny, Ewa Deelman, Michela Taufer:
End-to-end Integration of Scientific Workflows on Distributed Cyberinfrastructures: Challenges and Lessons Learned with an Earth Science Application. UCC 2023: 17 - [i13]Chaitanya Afle, Patrick R. Miles, Silvina Caíno-Lores, Collin D. Capano, Ingo Tews, Karan Vahi, Ewa Deelman, Michela Taufer, Duncan A. Brown:
Reproducing the results for NICER observation of PSR J0030+0451. CoRR abs/2304.01035 (2023) - 2022
- [j43]Ria Patel, Brandan Roachell, Silvina Caíno-Lores, Ross Ketron, Jacob Leonard, Nigel Tan, Karan Vahi, Duncan A. Brown, Ewa Deelman, Michela Taufer:
Reproducibility of the First Image of a Black Hole in the Galaxy M87 From the Event Horizon Telescope Collaboration. Comput. Sci. Eng. 24(5): 42-52 (2022) - [j42]Stephen Herbein, Tapasya Patki, Dong H. Ahn, Sebastian Mobo, Clark Hathaway, Silvina Caíno-Lores, James Corbett, David Domyancic, Thomas R. W. Scogland, Bronis R. de Supinski, Michela Taufer:
An analytical performance model of generalized hierarchical scheduling. Int. J. High Perform. Comput. Appl. 36(3): 289-306 (2022) - [j41]Michael R. Wyatt II, Stephen Herbein, Todd Gamblin, Michela Taufer:
AI4IO: A suite of AI-based tools for IO-aware scheduling. Int. J. High Perform. Comput. Appl. 36(3): 370-387 (2022) - [j40]Nigel Tan, Robert F. Bird, Guangye Chen, Scott V. Luedtke, Brian J. Albright, Michela Taufer:
Analysis of Vector Particle-In-Cell (VPIC) memory usage optimizations on cutting-edge computer architectures. J. Comput. Sci. 60: 101566 (2022) - [j39]Ricardo M. Llamas, Leobardo Valera, Paula Olaya, Michela Taufer, Rodrigo Vargas:
Downscaling Satellite Soil Moisture Using a Modular Spatial Inference Framework. Remote. Sens. 14(13): 3137 (2022) - [j38]Robert F. Bird, Nigel Tan, Scott V. Luedtke, Stephen Lien Harrell, Michela Taufer, Brian J. Albright:
VPIC 2.0: Next Generation Particle-in-Cell Simulations. IEEE Trans. Parallel Distributed Syst. 33(4): 952-963 (2022) - [j37]Ariel Keller Rorabaugh, Silvina Caíno-Lores, Travis Johnston, Michela Taufer:
Building High-Throughput Neural Architecture Search Workflows via a Decoupled Fitness Prediction Engine. IEEE Trans. Parallel Distributed Syst. 33(11): 2913-2926 (2022) - [c114]Paula Olaya, Silvina Caíno-Lores, Vanessa Lama, Ria Patel, Ariel Keller Rorabaugh, Osamu Miyashita, Florence Tama, Michela Taufer:
Identifying Structural Properties of Proteins from X-ray Free Electron Laser Diffraction Patterns. e-Science 2022: 21-31 - [c113]Ian Lumsden, Jakob Lüttgau, Vanessa Lama, Connor Scully-Allison, Stephanie Brink, Katherine E. Isaacs, Olga Pearce, Michela Taufer:
Enabling Call Path Querying in Hatchet to Identify Performance Bottlenecks in Scientific Applications. e-Science 2022: 256-266 - [c112]Ria Patel, Ariel Keller Rorabaugh, Paula Olaya, Silvina Caíno-Lores, Georgia Channing, Catherine D. Schuman, Osamu Miyashita, Florence Tama, Michela Taufer:
A Methodology to Generate Efficient Neural Networks for Classification of Scientific Datasets. e-Science 2022: 389-390 - [c111]Dominic Kennedy, Paula Olaya, Jay F. Lofstead, Rodrigo Vargas, Michela Taufer:
Augmenting Singularity to Generate Fine-grained Workflows, Record Trails, and Data Provenance. e-Science 2022: 403-404 - [c110]Glenn Tarcea, Brian Puchala, Tracy Berman, Giorgio Scorzelli, Valerio Pascucci, Michela Taufer, John Allison:
The Materials Commons Data Repository. e-Science 2022: 405-406 - [c109]Jae-Seung Yeom, Dong H. Ahn, Ian Lumsden, Jakob Lüttgau, Silvina Caíno-Lores, Michela Taufer:
Ubique: A New Model for Untangling Inter-task Data Dependence in Complex HPC Workflows. e-Science 2022: 421-422 - [c108]Jakob Lüttgau, Silvina Caíno-Lores, Kae Suarez, Dong H. Ahn, Stephen Herbein, Michela Taufer:
Reproducing and Extending Analytical Performance Models of Generalized Hierarchical Scheduling. e-Science 2022: 450-455 - [c107]Paula Olaya, Jakob Lüttgau, Naweiluo Zhou, Jay F. Lofstead, Giorgio Scorzelli, Valerio Pascucci, Michela Taufer:
NSDF-FUSE: A Testbed for Studying Object Storage via FUSE File Systems. HPDC 2022: 277-278 - [c106]Jakob Lüttgau, Paula Olaya, Naweiluo Zhou, Giorgio Scorzelli, Valerio Pascucci, Michela Taufer:
NSDF-Cloud: Enabling Ad-Hoc Compute Clusters Across Academic and Commercial Clouds. HPDC 2022: 279-280 - [c105]Patrick Bell, Kae Suarez, Barbara Fossum, Dylan Chapp, Sanjukta Bhowmick, Michela Taufer:
A Research-Based Course Module to Study Non-determinism in High Performance Applications. IPDPS Workshops 2022: 346-353 - [c104]Jakob Lüttgau, Giorgio Scorzelli, Valerio Pascucci, Glenn Tarcea, Christine R. Kirkpatrick, Michela Taufer:
NSDF-Catalog: Lightweight Indexing Service for Democratizing Data Delivery. UCC 2022: 1-10 - [c103]Tu Mai Anh Do, Loïc Pottier, Rafael Ferreira da Silva, Frédéric Suter, Silvina Caíno-Lores, Michela Taufer, Ewa Deelman:
Co-scheduling Ensembles of In Situ Workflows. WORKS@SC 2022: 43-51 - [d1]Duncan A. Brown, Karan Vahi, Michela Taufer, Von Welch, Ewa Deelman:
Reproducing GW150914: the first observation of gravitational waves from a binary black hole merger. IEEE DataPort, 2022
- [i12]Connor Scully-Allison, Ian Lumsden, Katy Williams, Jesse Bartels, Michela Taufer, Stephanie Brink, Abhinav Bhatele, Olga Pearce, Katherine E. Isaacs:
Designing an Interactive, Notebook-Embedded, Tree Visualization to Support Exploratory Performance Analysis. CoRR abs/2205.04557 (2022) - [i11]Ria Patel, Brandan Roachell, Silvina Caíno-Lores, Ross Ketron, Jacob Leonard, Nigel Tan, Duncan A. Brown, Ewa Deelman, Michela Taufer:
Reproducibility of the First Image of a Black Hole in the Galaxy M87 from the Event Horizon Telescope (EHT) Collaboration. CoRR abs/2205.10267 (2022) - [i10]Tu Mai Anh Do, Loïc Pottier, Rafael Ferreira da Silva, Frédéric Suter, Silvina Caíno-Lores, Michela Taufer, Ewa Deelman:
Co-scheduling Ensembles of In Situ Workflows. CoRR abs/2208.09190 (2022) - 2021
- [j36]Duncan A. Brown, Karan Vahi, Michela Taufer, Von Welch, Ewa Deelman, Lorena A. Barba, George K. Thiruvathukal:
Reproducing GW150914: The First Observation of Gravitational Waves From a Binary Black Hole Merger. Comput. Sci. Eng. 23(2): 73-82 (2021) - [j35]Tu Mai Anh Do, Loïc Pottier, Silvina Caíno-Lores, Rafael Ferreira da Silva, Michel A. Cuendet, Harel Weinstein, Trilce Estrada, Michela Taufer, Ewa Deelman:
A lightweight method for evaluating in situ workflow efficiency. J. Comput. Sci. 48: 101259 (2021) - [j34]Patrick Bell, Kae Suarez, Dylan Chapp, Nigel Tan, Sanjukta Bhowmick, Michela Taufer:
ANACIN-X: A software framework for studying non-determinism in MPI applications. Softw. Impacts 10: 100151 (2021) - [j33]Hector Carrillo-Cabada, Jeremy Benson, Asghar M. Razavi, Brianna Mulligan, Michel A. Cuendet, Harel Weinstein, Michela Taufer, Trilce Estrada:
A Graphic Encoding Method for Quantitative Classification of Protein Structure and Representation of Conformational Changes. IEEE ACM Trans. Comput. Biol. Bioinform. 18(4): 1336-1349 (2021) - [j32]Dylan Chapp, Nigel Tan, Sanjukta Bhowmick, Michela Taufer:
Identifying Degree and Sources of Non-Determinism in MPI Applications Via Graph Kernels. IEEE Trans. Parallel Distributed Syst. 32(12): 2936-2952 (2021) - [c102]Michela Taufer, Ewa Deelman, Rafael Ferreira da Silva, Trilce Estrada, Mary W. Hall, Miron Livny:
A Roadmap to Robust Science for High-throughput Applications: The Developers' Perspective. CLUSTER 2021: 807-808 - [c101]Michela Taufer, Ewa Deelman, Rafael Ferreira da Silva, Trilce Estrada, Mary W. Hall:
A Roadmap to Robust Science for High-throughput Applications: The Scientists' Perspective. e-Science 2021: 247-248 - [c100]Ross Ketron, Jacob Leonard, Brandan Roachell, Ria Patel, R. White, Silvina Caíno-Lores, Nigel Tan, Patrick R. Miles, Karan Vahi, Ewa Deelman, Duncan A. Brown, Michela Taufer:
A Case Study in Scientific Reproducibility from the Event Horizon Telescope (EHT). e-Science 2021: 249-250 - [c99]Michela Taufer:
AI4IO: A Suite of Ai-Based Tools for IO-Aware HPC Resource Management. HiPC 2021: 1 - [c98]Nigel Tan, Robert F. Bird, Guangye Chen, Michela Taufer:
Optimize Memory Usage in Vector Particle-In-Cell (VPIC) to Break the 10 Trillion Particle Barrier in Plasma Simulations. ICCS (2) 2021: 452-465 - [c97]Tu Mai Anh Do, Loïc Pottier, Rafael Ferreira da Silva, Silvina Caíno-Lores, Michela Taufer, Ewa Deelman:
Assessing Resource Provisioning and Allocation of Ensembles of In Situ Workflows. ICPP Workshops 2021: 38:1-38:10 - [i9]Ariel Keller Rorabaugh, Silvina Caíno-Lores, Michael R. Wyatt II, Travis Johnston, Michela Taufer:
PEng4NN: An Accurate Performance Estimation Engine for Efficient Automated Neural Network Architecture Search. CoRR abs/2101.04185 (2021) - [i8]Robert F. Bird, Nigel Tan, Scott V. Luedtke, Stephen Lien Harrell, Michela Taufer, Brian J. Albright:
VPIC 2.0: Next Generation Particle-in-Cell Simulations. CoRR abs/2102.13133 (2021) - [i7]Mark Asch, François Bodin, Micah Beck, Terry Moore, Michela Taufer, Jean-Pierre Vilotte:
Cybercosm: New Foundations for a Converged Science Data Ecosystem. CoRR abs/2105.10680 (2021) - 2020
- [j31]Dong H. Ahn, Ned Bass, Albert Chu, Jim Garlick, Mark Grondona, Stephen Herbein, Helgi I. Ingólfsson, Joseph Koning, Tapasya Patki, Thomas R. W. Scogland, Becky Springmeyer, Michela Taufer:
Flux: Overcoming scheduling challenges for exascale workflows. Future Gener. Comput. Syst. 110: 202-213 (2020) - [j30]Ricardo M. Llamas, Mario Guevara, Danny Rorabaugh, Michela Taufer, Rodrigo Vargas:
Spatial Gap-Filling of ESA CCI Satellite-Derived Soil Moisture Based on Geostatistical Techniques and Multiple Regression. Remote. Sens. 12(4): 665 (2020) - [j29]Dylan Chapp, Victoria Stodden, Michela Taufer:
Building a Vision for Reproducibility in the Cyberinfrastructure Ecosystem: Leveraging Community Efforts. Supercomput. Front. Innov. 7(1): 112-129 (2020) - [j28]Tao Gao, Yanfei Guo, Boyu Zhang, Pietro Cicotti, Yutong Lu, Pavan Balaji, Michela Taufer:
Memory-Efficient and Skew-Tolerant MapReduce Over MPI for Supercomputing Systems. IEEE Trans. Parallel Distributed Syst. 31(12): 2734-2748 (2020) - [c96]Tu Mai Anh Do, Loïc Pottier, Stephen Thomas, Rafael Ferreira da Silva, Michel A. Cuendet, Harel Weinstein, Trilce Estrada, Michela Taufer, Ewa Deelman:
A Novel Metric to Evaluate In Situ Workflows. ICCS (1) 2020: 538-553 - [c95]Michael R. Wyatt II, Stephen Herbein, Kathleen Shoga, Todd Gamblin, Michela Taufer:
CanarIO: Sounding the Alarm on IO-Related Performance Degradation. IPDPS 2020: 73-83 - [c94]Stephanie Brink, Ian Lumsden, Connor Scully-Allison, Katy Williams, Olga Pearce, Todd Gamblin, Michela Taufer, Katherine E. Isaacs, Abhinav Bhatele:
Usability and Performance Improvements in Hatchet. HUST/ProTools@SC 2020: 49-58 - [i6]Paula Olaya, Jay F. Lofstead, Michela Taufer:
Building Containerized Environments for Reproducibility and Traceability of Scientific Workflows. CoRR abs/2009.08495 (2020) - [i5]Duncan A. Brown, Karan Vahi, Michela Taufer, Von Welch, Ewa Deelman:
Reproducing GW150914: the first observation of gravitational waves from a binary black hole merger. CoRR abs/2010.07244 (2020)
2010 – 2019
- 2019
- [j27]Dylan Chapp, Danny Rorabaugh, Kento Sato, Dong H. Ahn, Michela Taufer:
A three-phase workflow for general and expressive representations of nondeterminism in HPC applications. Int. J. High Perform. Comput. Appl. 33(6) (2019) - [j26]Robert Searles, Stephen Herbein, Travis Johnston, Michela Taufer, Sunita Chandrasekaran:
Creating a portable, high-level graph analytics paradigm for compute and data-intensive applications. Int. J. High Perform. Comput. Netw. 13(1): 105-118 (2019) - [c93]Danny Rorabaugh, Mario Guevara, Ricardo M. Llamas, Joy Kitson, Rodrigo Vargas, Michela Taufer:
SOMOSPIE: A Modular SOil MOisture SPatial Inference Engine Based on Data-Driven Decisions. eScience 2019: 1-10 - [c92]Michela Taufer, Ewa Deelman, Stephen Thomas, Michael R. Wyatt II, Tu Mai Anh Do, Loïc Pottier, Rafael Ferreira da Silva, Harel Weinstein, Michel A. Cuendet, Trilce Estrada:
Characterizing In Situ and In Transit Analytics of Molecular Dynamics Simulations for Next-Generation Supercomputers. eScience 2019: 188-198 - [c91]Dylan Chapp, Danny Rorabaugh, Duncan A. Brown, Ewa Deelman, Karan Vahi, Von Welch, Michela Taufer:
Applicability Study of the PRIMAD Model to LIGO Gravitational Wave Search Workflows. P-RECS@HPDC 2019: 1-6 - [c90]Ewa Deelman, Victoria Stodden, Michela Taufer, Von Welch:
Initial Thoughts on Cybersecurity And Reproducibility. P-RECS@HPDC 2019: 13-15 - [c89]Michela Taufer:
Session details: Reliability and Variability. HPDC 2019 - [c88]Joshua Hoke Davis, Tao Gao, Sunita Chandrasekaran, Heike Jagode, Anthony Danalis, Jack J. Dongarra, Pavan Balaji, Michela Taufer:
Characterization of Power Usage and Performance in Data-Intensive Applications Using MapReduce over MPI. PARCO 2019: 287-298 - [e4]Michela Taufer, Pavan Balaji, Antonio J. Peña:
Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis, SC 2019, Denver, Colorado, USA, November 17-19, 2019. ACM 2019, ISBN 978-1-4503-6229-0 [contents] - [i4]Joshua Hoke Davis, Tao Gao, Sunita Chandrasekaran, Michela Taufer:
Studying the Impact of Power Capping on MapReduce-based, Data-intensive Mini-applications on Intel KNL and KNM Architectures. CoRR abs/1903.11694 (2019) - [i3]Dylan Chapp, Danny Rorabaugh, Duncan A. Brown, Ewa Deelman, Karan Vahi, Von Welch, Michela Taufer:
Applicability study of the PRIMAD model to LIGO gravitational wave search workflows. CoRR abs/1904.05211 (2019) - [i2]Danny Rorabaugh, Mario Guevara, Ricardo M. Llamas, Joy Kitson, Rodrigo Vargas, Michela Taufer:
SOMOSPIE: A modular SOil MOisture SPatial Inference Engine based on data driven decision. CoRR abs/1904.07754 (2019) - 2018
- [j25]Ewa Deelman, Tom Peterka, Ilkay Altintas, Christopher D. Carothers, Kerstin Kleese van Dam, Kenneth Moreland, Manish Parashar, Lavanya Ramakrishnan, Michela Taufer, Jeffrey S. Vetter:
The future of scientific workflows. Int. J. High Perform. Comput. Appl. 32(1): 159-175 (2018) - [j24]Dylan Chapp, Kento Sato, Dong H. Ahn, Michela Taufer:
Record-and-Replay Techniques for HPC Systems: A Survey. Supercomput. Front. Innov. 5(1): 11-30 (2018) - [c87]Trilce Estrada, Jeremy Benson, Hector Carrillo-Cabada, Asghar M. Razavi, Michel A. Cuendet, Harel Weinstein, Ewa Deelman, Michela Taufer:
Graphic Encoding of Macromolecules for Efficient High-Throughput Analysis. BCB 2018: 315-324 - [c86]Sean McDaniel-Gray, David L. Boothe, Alfred B. Yu, Dale R. Shires, Michela Taufer:
Leveraging In Situ Data Analysis to Enable Computational Steering of Brain's Neocortex Simulations with GENESIS. HPCC/SmartCity/DSS 2018: 873-880 - [c85]Tao Gao, Yanfei Guo, Boyu Zhang, Pietro Cicotti, Yutong Lu, Pavan Balaji, Michela Taufer:
On the Power of Combiner Optimizations in MapReduce Over MPI Workflows. ICPADS 2018: 441-448 - [c84]Xinyu Chen, Jeremy Benson, Matt Peterson, Michela Taufer, Trilce Estrada:
KeyBin2: Distributed Clustering for Scalable and In-Situ Analysis. ICPP 2018: 34:1-34:10 - [c83]Michael R. Wyatt II, Stephen Herbein, Todd Gamblin, Adam Moody, Dong H. Ahn, Michela Taufer:
PRIONN: Predicting Runtime and IO using Neural Networks. ICPP 2018: 46:1-46:12 - [c82]Michela Taufer:
Modeling the Next-Generation High Performance Schedulers. SIGSIM-PADS 2018: 1 - 2017
- [j23]Michela Taufer, Arnold L. Rosenberg:
Scheduling DAG-based workflows on single cloud instances: High-performance and cost effectiveness with a static scheduler. Int. J. High Perform. Comput. Appl. 31(1): 19-31 (2017) - [j22]Travis Johnston, Boyu Zhang, Adam Liwo, Silvia Crivelli, Michela Taufer:
In situ data analytics and indexing of protein trajectories. J. Comput. Chem. 38(16): 1419-1430 (2017) - [j21]Boyu Zhang, Trilce Estrada, Pietro Cicotti, Pavan Balaji, Michela Taufer:
Enabling scalable and accurate clustering of distributed ligand geometries on supercomputers. Parallel Comput. 63: 38-60 (2017) - [c81]Thomas Kitson, Paula Olaya, Elizabeth Racca, Michael R. Wyatt II, Mario Guevara, Rodrigo Vargas, Michela Taufer:
Data analytics for modeling soil moisture patterns across united states ecoclimatic domains. IEEE BigData 2017: 4768-4770 - [c80]Tao Gao, Yanfei Guo, Yanjie Wei, Bingqiang Wang, Yutong Lu, Pietro Cicotti, Pavan Balaji, Michela Taufer:
Bloomfish: A Highly Scalable Distributed K-mer Counting Framework. ICPADS 2017: 170-179 - [c79]Tao Gao, Yanfei Guo, Boyu Zhang, Pietro Cicotti, Yutong Lu, Pavan Balaji, Michela Taufer:
Mimir: Memory-Efficient and Scalable MapReduce for Large Supercomputing Systems. IPDPS 2017: 1098-1108 - [e3]Julian M. Kunkel, Rio Yokota, Michela Taufer, John Shalf:
High Performance Computing - ISC High Performance 2017 International Workshops, DRBSD, ExaComm, HCPM, HPC-IODC, IWOPH, IXPUG, P^3MA, VHPC, Visualization at Scale, WOPSSS, Frankfurt, Germany, June 18-22, 2017, Revised Selected Papers. Lecture Notes in Computer Science 10524, Springer 2017, ISBN 978-3-319-67629-6 [contents] - 2016
- [j20]Stephen Herbein, Sean McDaniel, Norbert Podhorszki, Jeremy Logan, Scott Klasky, Michela Taufer:
Performance characterization of irregular I/O at the extreme scale. Parallel Comput. 51: 17-36 (2016) - [j19]Michela Taufer, Pavan Balaji, Satoshi Matsuoka:
Special Issue on Cluster Computing. Parallel Comput. 58: 25-26 (2016) - [c78]Michael R. Wyatt II, Travis Johnston, Mia Papas, Michela Taufer:
Development of a Scalable Method for Creating Food Groups Using the NHANES Dataset and MapReduce. BCB 2016: 118-127 - [c77]Ryan McKenna, Stephen Herbein, Adam Moody, Todd Gamblin, Michela Taufer:
Machine Learning Predictions of Runtime and IO Traffic on High-End Clusters. CLUSTER 2016: 255-258 - [c76]Michela Taufer:
Who is Afraid of I/O?: Exploring I/O Challenges and Opportunities at the Exascale. ScienceCloud@HPDC 2016: 1 - [c75]Stephen Herbein, Dong H. Ahn, Don Lipari, Thomas R. W. Scogland, Marc Stearman, Mark Grondona, Jim Garlick, Becky Springmeyer, Michela Taufer:
Scalable I/O-Aware Job Scheduling for Burst Buffer Enabled HPC Clusters. HPDC 2016: 69-80 - [c74]Sean McDaniel, David L. Boothe, Joshua C. Crone, Song Jun Park, Dale R. Shires, Alfred B. Yu, Michela Taufer:
Study of Neocortex Simulations with GENESIS on High Performance Computing Resources. ICPADS 2016: 924-931 - [c73]Travis Johnston, Connor Zanin, Michela Taufer:
HYPPO: A Hybrid, Piecewise Polynomial Modeling Technique for Non-Smooth Surfaces. SBAC-PAD 2016: 26-33 - [c72]Jeremy Benson, Trilce Estrada, Arnold L. Rosenberg, Michela Taufer:
Scheduling Matters: Area-Oriented Heuristic for Resource Management. SBAC-PAD 2016: 214-221 - [c71]Stephen Herbein, Ayush Dusia, Aaron Myles Landwehr, Sean McDaniel, José Monsalve Diaz, Yang Yang, Seetharami R. Seelam, Michela Taufer:
Resource Management for Running HPC Applications in Container Clouds. ISC 2016: 261-278 - [e2]Michela Taufer, Bernd Mohr, Julian M. Kunkel:
High Performance Computing - ISC High Performance 2016 International Workshops, ExaComm, E-MuCoCoS, HPC-IODC, IXPUG, IWOPH, P^3MA, VHPC, WOPSSS, Frankfurt, Germany, June 19-23, 2016, Revised Selected Papers. Lecture Notes in Computer Science 9945, 2016, ISBN 978-3-319-46078-9 [contents] - 2015
- [j18]Shuching Ou, Di Cui, Matthew Wezowicz, Michela Taufer, Sandeep Patel:
Free energetics of carbon nanotube association in aqueous inorganic NaI salt solutions: Temperature effects using all-atom molecular dynamics simulations. J. Comput. Chem. 36(16): 1196-1212 (2015) - [c70]Boyu Zhang, Trilce Estrada, Pietro Cicotti, Pavan Balaji, Michela Taufer:
Accurate Scoring of Drug Conformations at the Extreme Scale. CCGRID 2015: 817-822 - [c69]Dylan Chapp, Travis Johnston, Michela Taufer:
On the Need for Reproducible Numerical Accuracy through Intelligent Runtime Selection of Reduction Algorithms at the Extreme Scale. CLUSTER 2015: 166-175 - [c68]Sean McDaniel, Stephen Herbein, Michela Taufer:
A Two-Tiered Approach to I/O Quality of Service in Docker Containers. CLUSTER 2015: 490-491 - [c67]Ayush Dusia, Yang Yang, Michela Taufer:
Network Quality of Service in Docker Containers. CLUSTER 2015: 527-528 - [c66]José Monsalve Diaz, Aaron Myles Landwehr, Michela Taufer:
Dynamic CPU Resource Allocation in Containerized Cloud Environments. CLUSTER 2015: 535-536 - [c65]Ryan McKinney, Vivek K. Pallipuram, Rodrigo Vargas, Michela Taufer:
From HPC Performance to Climate Modeling: Transforming Methods for HPC Predictions into Models of Extreme Climate Conditions. e-Science 2015: 108-117 - [c64]Travis Johnston, Mohammad Alsulmi, Pietro Cicotti, Michela Taufer:
Performance Tuning of MapReduce Jobs Using Surrogate-based Modeling. ICCS 2015: 49-59 - [c63]Trilce Estrada, Michael R. Wyatt II, Michela Taufer:
A Genetic Programming Approach to Design Resource Allocation Policies for Heterogeneous Workflows in the Cloud. ICPADS 2015: 372-379 - [c62]Vivek K. Pallipuram, Trilce Estrada, Michela Taufer:
A Testing Engine for High-Performance and Cost-Effective Workflow Execution in the Cloud. ICPP 2015: 849-858 - [c61]Ramesh Hariharan, Ananth Kalyanaraman, Michela Taufer, Trilce Estrada, Pietro Cicotti, Pavan Balaji:
HiCOMB 2015 Keynote and Invited Talks. IPDPS Workshops 2015: 331 - [c60]Michela Taufer:
AsHES Keynote. IPDPS Workshops 2015: 593 - [e1]Thilo Kielmann, Dean Hildebrand, Michela Taufer:
Proceedings of the 24th International Symposium on High-Performance Parallel and Distributed Computing, HPDC 2015, Portland, OR, USA, June 15-19, 2015. ACM 2015, ISBN 978-1-4503-3550-8 [contents] - [i1]Travis Johnston, Boyu Zhang, Adam Liwo, Silvia Crivelli, Michela Taufer:
It-Situ Data Analysis of Protein Folding Trajectories. CoRR abs/1510.08789 (2015) - 2014
- [j17]Samuel Schlachter, Stephen Herbein, Shuching Ou, Jeremy S. Logan, Sandeep Patel, Michela Taufer:
Pursuing Coordinated Trajectory Progression and Efficient Resource Utilization of GPU-Enabled Molecular Dynamics Simulations. IEEE Des. Test 31(1): 40-50 (2014) - [c59]Vivek K. Pallipuram, Jeffrey DiMarco, Michela Taufer:
Applying frequency analysis techniques to dag-based workflows to benchmark and predict resource behavior on non-dedicated clusters. CLUSTER 2014: 29-37 - [c58]Feng Raoking, Joanne McGrath Cohoon, Kathryn Cooke, Michela Taufer, Trilce Estrada:
Gender and volunteer computing: A survey study. FIE 2014: 1-5 - [c57]Marcos Portnoi, Samuel Schlachter, Michela Taufer:
Study of the Network Impact on Earthquake Early Warning in the Quake-catcher Network Project. ICCS 2014: 453-464 - [c56]Michael Matheny, Stephen Herbein, Norbert Podhorszki, Scott Klasky, Michela Taufer:
Using surrogate-based modeling to predict optimal I/O parameters of applications at the extreme scale. ICPADS 2014: 568-575 - [c55]Stephen Herbein, Scott Klasky, Michela Taufer:
Benchmarking the Performance of Scientific Applications with Irregular I/O at the Extreme Scale. ICPP Workshops 2014: 292-301 - [c54]Boyu Zhang, Trilce Estrada, Pietro Cicotti, Michela Taufer:
Enabling In-Situ Data Analysis for Large Protein-Folding Trajectory Datasets. IPDPS 2014: 221-230 - [c53]Bahman Javadi, Boyu Zhang, Michela Taufer:
Bandwidth Modeling in Large Distributed Systems for Big Data Applications. PDCAT 2014: 21-27 - 2013
- [j16]Michela Taufer, Narayan Ganesan, Sandeep Patel:
GPU-Enabled Macromolecular Simulation: Challenges and Opportunities. Comput. Sci. Eng. 15(1): 56-65 (2013) - [j15]Kyle E. Benson, Samuel Schlachter, Trilce Estrada, Michela Taufer, Jesse Lawrence, Elizabeth Cochran:
On the powerful use of simulations in the Quake-Catcher Network to efficiently position low-cost earthquake sensors. Future Gener. Comput. Syst. 29(8): 2128-2142 (2013) - [c52]Stephen Herbein, Michael Matheny, Matthew Wezowicz, Jaron T. Krogel, Jeremy Logan, J. Kim, Scott Klasky, Michela Taufer:
Performance Impact of I/O on QMCPack Simulations at the Petascale and Beyond. CSE 2013: 92-99 - [c51]Boyu Zhang, Trilce Estrada, Pietro Cicotti, Michela Taufer:
On Efficiently Capturing Scientific Properties in Distributed Big Data without Moving the Data: A Case Study in Distributed Structural Biology Using MapReduce. CSE 2013: 117-124 - [c50]Samuel Schlachter, Stephen Herbein, Michela Taufer, Shuching Ou, Sandeep Patel, Jeremy S. Logan:
Efficient SDS Simulations on Multi-GPU Nodes of XSEDE High-End Clusters. e-Science 2013: 116-123 - [c49]Trilce Estrada, Kathleen L. Pusecker, Manuel R. Torres, Joanne McGrath Cohoon, Michela Taufer:
Benchmarking Gender Differences in Volunteer Computing Projects. e-Science 2013: 342-349 - [c48]Daniel T. Yehdego, Boyu Zhang, Vikram Kumar Reddy Kodimala, Kyle L. Johnson, Michela Taufer, Ming-Ying Leung:
Secondary Structure Predictions for Long RNA Sequences Based on Inversion Excursions and MapReduce. IPDPS Workshops 2013: 520-529 - [c47]Matthew Wezowicz, Trilce Estrada, Sandeep Patel, Michela Taufer:
Performance Dissection of a Molecular Dynamics Code across CUDA and GPU Generations. IPDPS Workshops 2013: 1355-1364 - 2012
- [j14]Trilce Estrada, Boyu Zhang, Pietro Cicotti, Roger S. Armen, Michela Taufer:
A scalable and accurate method for classifying protein-ligand binding geometries using a MapReduce approach. Comput. Biol. Medicine 42(7): 758-771 (2012) - [j13]Giorgos Arampatzis, Markos A. Katsoulakis, Petr Plechác, Michela Taufer, Lifan Xu:
Hierarchical fractional-step approximations and parallel kinetic Monte Carlo algorithms. J. Comput. Phys. 231(23): 7795-7814 (2012) - [c46]Daniel T. Yehdego, Boyu Zhang, Michela Taufer, Vikram Kumar Reddy Kodimala, Rahulsimham Vegesna, Sameera Viswakula, Kyle L. Johnson, Ming-Ying Leung:
Secondary structure predictions for long RNA sequences based on inversion excursions: preliminary results. BCB 2012: 545-547 - [c45]Boyu Zhang, Daniel T. Yehdego, Kyle L. Johnson, Ming-Ying Leung, Michela Taufer:
A modularized MapReduce framework to support RNA secondary structure prediction and analysis workflows. BIBM Workshops 2012: 86-93 - [c44]Michael Matheny, Samuel Schlachter, L. M. Crouse, E. T. Kimmel, Trilce Estrada, Marcel Schumann, Roger S. Armen, Gary M. Zoppetti, Michela Taufer:
ExSciTecH: Expanding volunteer computing to Explore Science, Technology, and Health. eScience 2012: 1-8 - [c43]Trilce Estrada, Boyu Zhang, Michela Taufer, Pietro Cicotti, Roger S. Armen:
Reengineering High-throughput Molecular Datasets for Scalable Clustering Using MapReduce. HPCC-ICESS 2012: 351-359 - [c42]Trilce Estrada, Michela Taufer:
On the effectiveness of application-aware self-management for scientific discovery in volunteer computing systems. SC 2012: 80 - [c41]Matthew Wezowicz, Michela Taufer:
On the Cost of a General GPU Framework: The Strange Case of CUDA 4.0 vs. CUDA 5.0. SC Companion 2012: 1535-1536 - 2011
- [j12]Jong Hyuk Park, Sheikh Iqbal Ahamed, Willy Susilo, Michela Taufer:
Special issue of computer communications on information and future communication security. Comput. Commun. 34(3): 223-225 (2011) - [j11]Brad A. Bauer, Joseph E. Davis, Michela Taufer, Sandeep Patel:
Molecular dynamics simulations of aqueous ions at the liquid-vapor interface accelerated using graphics processors. J. Comput. Chem. 32(3): 375-385 (2011) - [j10]Narayan Ganesan, Brad A. Bauer, Timothy R. Lucas, Sandeep Patel, Michela Taufer:
Structural, dynamic, and electrostatic properties of fully hydrated DMPC bilayers from molecular dynamics simulations accelerated with graphical processing units (GPUs). J. Comput. Chem. 32(14): 2958-2973 (2011) - [j9]Obaidur Rahaman, Trilce Estrada, Douglas J. Doren, Michela Taufer, Charles L. Brooks III, Roger S. Armen:
Evaluation of Several Two-Step Scoring Functions Based on Linear Interaction Energy, Effective Ligand Size, and Empirical Pair Potentials for Prediction of Protein-Ligand Binding Geometry and Free Energy. J. Chem. Inf. Model. 51(9): 2047-2065 (2011) - [c40]Kyle E. Benson, Trilce Estrada, Michela Taufer, Jesse Lawrence, Elizabeth Cochran:
On the Powerful Use of Simulations in the Quake-Catcher Network to Efficiently Position Low-cost Earthquake Sensors. eScience 2011: 77-84 - [c39]Rolf Riesen, Kurt B. Ferreira, Maria Ruiz Varela, Michela Taufer, Arun Rodrigues:
Simulating Application Resilience at Exascale. Euro-Par Workshops (2) 2011: 221-230 - [c38]Trilce Estrada, Michela Taufer:
Providing Quality of Science in Volunteer Computing. HPCC 2011: 68-77 - [c37]Narayan Ganesan, Michela Taufer, Brad A. Bauer, Sandeep Patel:
FENZI: GPU-Enabled Molecular Dynamics Simulations of Large Membrane Regions Based on the CHARMM Force Field and PME. IPDPS Workshops 2011: 472-480 - [c36]Trilce Estrada, Boyu Zhang, Pietro Cicotti, Roger S. Armen, Michela Taufer:
Poster: study of protein-ligand binding geometries using a scalable and accurate octree-based algorithm in mapReduce. SC Companion 2011: 39-40 - [r1]Roger S. Armen, Eric R. May, Michela Taufer:
Protein Docking. Encyclopedia of Parallel Computing 2011: 1638-1647 - 2010
- [c35]Trilce Estrada, Roger S. Armen, Michela Taufer:
Automatic selection of near-native protein-ligand conformations using a hierarchical clustering and volunteer computing. BCB 2010: 204-213 - [c34]Narayan Ganesan, Roger D. Chamberlain, Jeremy Buhler, Michela Taufer:
Accelerating HMMER on GPUs by implementing hybrid data and task parallelism. BCB 2010: 418-421 - [c33]Abel Licon, Michela Taufer, Ming-Ying Leung, Kyle L. Johnson:
A Dynamic Programming Algorithm for Finding the Optimal Segmentation of an RNA Sequence in Secondary Structure Predictions. BICoB 2010: 165-170 - [c32]Michela Taufer, Omar Padron, Philip Saponaro, Sandeep Patel:
Improving numerical reproducibility and stability in large-scale numerical simulations on GPUs. IPDPS 2010: 1-9 - [c31]Lifan Xu, Michela Taufer, Stuart Collins, Dionisios G. Vlachos:
Parallelization of tau-leap coarse-grained Monte Carlo simulations on GPUs. IPDPS 2010: 1-9
2000 – 2009
- 2009
- [j8]Trilce Estrada, Michela Taufer, David P. Anderson:
Performance Prediction and Analysis of BOINC Projects: An Empirical Study with EmBOINC. J. Grid Comput. 7(4): 537-554 (2009) - [j7]Michela Taufer, Abel Licon, Roberto Araiza, David Mireles, F. H. D. van Batenburg, Alexander P. Gultyaev, Ming-Ying Leung:
PseudoBase++: an extension of PseudoBase for easy searching, formatting and visualization of pseudoknots. Nucleic Acids Res. 37(Database-Issue): 127-135 (2009) - [c30]Joseph E. Davis, Adnan Ozsoy, Sandeep Patel, Michela Taufer:
Towards Large-Scale Molecular Dynamics Simulations on Graphics Processors. BICoB 2009: 176-186 - [c29]Trilce Estrada, Michela Taufer, Kevin Reed:
Modeling Job Lifespan Delays in Volunteer Computing Projects. CCGRID 2009: 331-338 - [c28]James Atlas, Trilce Estrada, Keith Decker, Michela Taufer:
Balancing Scientist Needs and Volunteer Preferences in Volunteer Computing Using Constraint Optimization. ICCS (1) 2009: 143-152 - [c27]Patrick McClory, Ezra Kissel, D. Martin Swany, Michela Taufer:
MNEMONIC: A Network Environment for Automatic Optimization and Tuning of Data Movement over Advanced Networks. ICCCN 2009: 1-7 - [c26]Trilce Estrada, Michela Taufer, Kevin Reed, David P. Anderson:
EmBOINC: An emulator for performance analysis of BOINC projects. IPDPS 2009: 1-8 - 2008
- [j6]Michela Taufer, Ming-Ying Leung, Thamar Solorio, Abel Licon, David Mireles, Roberto Araiza, Kyle L. Johnson:
RNAVLab: A virtual laboratory for studying RNA secondary structures based on grid computing technology. Parallel Comput. 34(11): 661-680 (2008) - [j5]Trilce Estrada, Olac Fuentes, Michela Taufer:
A distributed evolutionary method to design scheduling policies for volunteer computing. SIGMETRICS Perform. Evaluation Rev. 36(3): 40-49 (2008) - [c25]Trilce Estrada, Olac Fuentes, Michela Taufer:
A distributed evolutionary method to design scheduling policies for volunteer computing. Conf. Computing Frontiers 2008: 313-322 - [c24]Michela Taufer, Thamar Solorio, Abel Licon, David Mireles, Ming-Ying Leung:
On the Effectiveness of Rebuilding RNA Secondary Structures from Sequence Chunks. IPDPS 2008: 1-8 - 2007
- [c23]Michela Taufer, Andre Kerstens, Trilce Estrada, David A. Flores, Richard Zamudio, Patricia J. Teller, Roger S. Armen, Charles L. Brooks III:
Moving Volunteer Computing towards Knowledge-Constructed, Dynamically-Adaptive Modeling and Scheduling. IPDPS 2007: 1-8 - [c22]Michela Taufer, Ming-Ying Leung, Kyle L. Johnson, Abel Licon:
RNAVLab: A unified environment for computational RNA structure analysis based on grid computing technology. IPDPS 2007: 1-8 - [c21]Richard Zamudio, Daniel Catarino, Michela Taufer, Brent Stearn, Karan Bhatia:
Topaz: Extending Firefox to Accommodate the GridFTP Protocol. IPDPS 2007: 1-8 - [c20]Michela Taufer, Andre Kerstens, Trilce Estrada, David A. Flores, Patricia J. Teller:
SimBA: A Discrete Event Simulator for Performance Prediction of Volunteer Computing Projects. PADS 2007: 189-197 - [c19]Guillermo A. Lopez, Michela Taufer, Patricia J. Teller:
Evaluation of IEEE 754 floating-point arithmetic compliance across a wide range of heterogeneous computers. Richard Tapia Celebration of Diversity in Computing Conference 2007: 1-4 - 2006
- [j4]Michela Taufer, Chahm An, Andreas Kerstens, Charles L. Brooks III:
Predictor@Home: A "Protein Structure Prediction Supercomputer' Based on Global Computing. IEEE Trans. Parallel Distributed Syst. 17(8): 786-796 (2006) - [c18]Trilce Estrada, David A. Flores, Michela Taufer, Patricia J. Teller, Andre Kerstens, David P. Anderson:
The Effectiveness of Threshold-Based Scheduling Policies in BOINC Projects. e-Science 2006: 88 - [c17]Maria Gabriela Aguilera, Patricia J. Teller, Michela Taufer, Felix Wolf:
A systematic multi-step methodology for performance analysis of communication traces of distributed applications based on hierarchical clustering. IPDPS 2006 - [c16]Trilce Estrada, Abel Licon, Michela Taufer:
compPknots: A Framework for Parallel Prediction and Comparison of RNA Secondary Structures with Pseudoknots. ISPA Workshops 2006: 677-686 - [c15]David A. Flores, Trilce Estrada, Michela Taufer, Patricia J. Teller, Andre Kerstens:
Poster reception - SimBA: a discrete event simulator for performance prediction of volunteer computing projects. SC 2006: 168 - 2005
- [j3]Michela Taufer, Michael F. Crowley, Daniel J. Price, Andrew A. Chien, Charles L. Brooks III:
Study of a highly accurate and fast protein-ligand docking method based on molecular dynamics. Concurr. Comput. Pract. Exp. 17(14): 1627-1641 (2005) - [j2]Kim K. Baldridge, Jerry P. Greenberg, Wibke Sudholt, Stephen Mock, Ilkay Altintas, Céline Amoreira, Yohann Potier, Adam Birnbaum, Karan Bhatia, Michela Taufer:
The Computational Chemistry Prototyping Environment. Proc. IEEE 93(3): 510-521 (2005) - [j1]Pietro Cicotti, Michela Taufer, Andrew A. Chien:
DGMonitor: A Performance Monitoring Tool for Sandbox-Based Desktop Grid Platforms. J. Supercomput. 34(2): 113-133 (2005) - [c14]Michela Taufer, Patricia J. Teller, David P. Anderson, Charles L. Brooks III:
Metrics for Effective Resource Management in Global Computing Environments. e-Science 2005: 204-211 - [c13]Michela Taufer, David P. Anderson, Pietro Cicotti, Charles L. Brooks III:
Homogeneous Redundancy: a Technique to Ensure Integrity of Molecular Simulation Results Using Public Computing. IPDPS 2005 - [c12]Michela Taufer, Chahm An, Andreas Kerstens, Charles L. Brooks III:
Predictor@Home: A "Protein Structure Prediction Supercomputer" Based on Public-Resource Computing. IPDPS 2005 - 2004
- [c11]Pietro Cicotti, Michela Taufer, Andrew A. Chien:
DGMonitor: A Performance Monitoring Tool for Sandbox-Based Desktop Grid Platforms. IPDPS 2004 - [c10]Derrick Kondo, Michela Taufer, Charles L. Brooks III, Henri Casanova, Andrew A. Chien:
Characterizing and Evaluating Desktop Grids: An Empirical Study. IPDPS 2004 - [c9]Michela Taufer, Michael F. Crowley, Daniel J. Price, Andrew A. Chien, Charles L. Brooks III:
Study of a Highly Accurate and Fast Protein-Ligand Docking Algorithm Based on Molecular Dynamics. IPDPS 2004 - 2003
- [c8]Bennet Uk, Michela Taufer, Thomas Stricker, Giovanni Settanni, Andrea Cavalli, Amedeo Caflisch:
Combining Task- and Data Parallelism to Speed up Protein Folding on a Desktop Grid Platform. CCGRID 2003: 240-247 - [c7]Michela Taufer, Thomas Stricker:
A Performance Monitor Based on Virtual Global Time for Clusters of PCs. CLUSTER 2003: 64-72 - [c6]Bennet Uk, Michela Taufer, Thomas Stricker, Giovanni Settanni, Andrea Cavalli:
Implementation and Characterization of Protein Folding on a Desktop Computational Grid - Is CHARMM a Suitable Candidate for the United Devices MetaProcessor? IPDPS 2003: 50 - 2002
- [b1]Michela Taufer:
Inverting middleware: performance analysis of layered application codes in high performance distributed computing. ETH Zurich, 2002, ISBN 3-89649-821-5, pp. 1-137 - [c5]Michela Taufer, Thomas Stricker, Gerard Roos, Peter Güntert:
On the Migration of the Scientific Code Dyana from SMPs to Clusters of PCs and on to the Grid. CCGRID 2002: 93-101 - [c4]Michela Taufer, Egon Perathoner, Andrea Cavalli, Amedeo Caflisch, Thomas Stricker:
Performance Characterization of a Molecular Dynamics Code on PC Clusters: Is There Any Easy Parallelism in CHARMM?. IPDPS 2002 - [c3]Michela Taufer, Thomas Stricker, Roger Weber:
Scalability and resource usage of an OLAP benchmark on clusters of PCs. SPAA 2002: 83-94
1990 – 1999
- 1998
- [c2]Michela Taufer, Thomas Stricker:
Accurate Performance Evaluation, Modelling and Prediction of a Message Passing Simulation Code based on Middleware. SC 1998: 52 - 1996
- [c1]Peter Arbenz, Martin Billeter, Peter Güntert, Peter Luginbühl, Michela Taufer, Urs von Matt:
Molecular Dynamics Simulations on Cray Clusters using the SCIDDLE-PVM environment. PVM 1996: 142-149
Coauthor Index
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