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ORCIDAdam K. Sieradzan
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2020 – today
- 2024
[j10]Krzysztof M. Ocetkiewicz, Cezary Czaplewski, Henryk Krawczyk, Agnieszka G. Lipska, Adam Liwo, Jerzy Proficz, Adam K. Sieradzan
, Pawel Czarnul:
Multi-GPU UNRES for scalable coarse-grained simulations of very large protein systems. Comput. Phys. Commun. 298: 109112 (2024)- 2023
- [j9]Adam K. Sieradzan, Jordi Sans-Duñó, Emilia A. Lubecka, Cezary Czaplewski, Agnieszka G. Lipska, Henryk Leszczynski, Krzysztof M. Ocetkiewicz, Jerzy Proficz, Pawel Czarnul, Henryk Krawczyk, Adam Liwo:
Optimization of parallel implementation of UNRES package for coarse-grained simulations to treat large proteins. J. Comput. Chem. 44(4): 602-625 (2023) - [j8]Agnieszka G. Lipska, Adam K. Sieradzan, Cezary Czaplewski, Andrea D. Lipinska, Krzysztof M. Ocetkiewicz, Jerzy Proficz, Pawel Czarnul, Henryk Krawczyk, Adam Liwo:
Long-time scale simulations of virus-like particles from three human-norovirus strains. J. Comput. Chem. 44(16): 1470-1483 (2023) - 2020
- [j7]Agnieszka S. Karczynska, Karolina Zieba, Urszula Uciechowska, Magdalena A. Mozolewska, Pawel Krupa, Emilia A. Lubecka, Agnieszka G. Lipska, Celina Sikorska, Sergey A. Samsonov, Adam K. Sieradzan, Artur Gieldon, Adam Liwo, Rafal Slusarz, Magdalena Slusarz, Jooyoung Lee, Keehyoung Joo, Cezary Czaplewski:
Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13. J. Chem. Inf. Model. 60(3): 1844-1864 (2020)
2010 – 2019
- 2018
- [j6]Adam K. Sieradzan, Artur Gieldon, Yanping Yin, Yi He, Harold A. Scheraga, Adam Liwo:
A new protein nucleic-acid coarse-grained force field based on the UNRES and NARES-2P force fields. J. Comput. Chem. 39(28): 2360-2370 (2018) - [j5]Cezary Czaplewski, Agnieszka S. Karczynska, Adam K. Sieradzan, Adam Liwo:
UNRES server for physics-based coarse-grained simulations and prediction of protein structure, dynamics and thermodynamics. Nucleic Acids Res. 46(Webserver-Issue): W304-W309 (2018) - [j4]Emilia A. Lubecka, Adam K. Sieradzan, Cezary Czaplewski, Pawel Krupa, Adam Liwo:
High Performance Computing with Coarse Grained Model of Biological Macromolecules. Supercomput. Front. Innov. 5(2): 63-75 (2018) - 2017
- [j3]Adam K. Sieradzan, Rafal Jakubowski:
Introduction of steered molecular dynamics into UNRES coarse-grained simulations package. J. Comput. Chem. 38(8): 553-562 (2017) - 2016
- [j2]Pawel Krupa, Magdalena A. Mozolewska, Marta Wisniewska, Yanping Yin, Yi He, Adam K. Sieradzan, Robert Ganzynkowicz, Agnieszka G. Lipska, Agnieszka S. Karczynska, Magdalena Slusarz, Rafal Slusarz, Artur Gieldon, Cezary Czaplewski, Dawid Jagiela, Bartlomiej Zaborowski, Harold A. Scheraga, Adam Liwo:
Performance of protein-structure predictions with the physics-based UNRES force field in CASP11. Bioinform. 32(21): 3270-3278 (2016) - 2015
- [j1]Adam K. Sieradzan:
Introduction of periodic boundary conditions into UNRES force field. J. Comput. Chem. 36(12): 940-946 (2015)
Coauthor Index
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