default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDHideo Matsuda
Person information
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2024
[j24]Kazufumi Hosoda
, Shigeto Seno, Naomi Murakami, Hideo Matsuda, Yutaka Osada, Rikuto Kamiura, Michio Kondoh:
Synthetic model ecosystem of 12 cryopreservable microbial species allowing for a noninvasive approach. Biosyst. 235: 105087 (2024)- [c33]Keigo Masuda, Yoshiaki Sota, Hideo Matsuda:
Accurate Detection of Fusion Genes in Long-Read Transcriptome Datasets from Multiple Cancer Cell Lines. ICBBB 2024: 7-13 - 2023
- [c32]Toru Nagamura, Shigeto Seno, Hironori Shigeta, Tomohiro Mashita, Hideo Matsuda:
Cell Tracking via Reinforcement Learning with Microscopic Image Simulator. ICBET 2023: 16-22 - [c31]Koki Nishi, Junko Yoshida, Shigeto Seno, Kyoji Horie, Hideo Matsuda:
Pseudotime-based Deep Learning of Gene Regulatory Relationships from Single-Cell Expression Data. ICBET 2023: 56-62 - 2022
- [c30]Kosho Murayama, Hideo Matsuda:
A Method for Detection of Markers for Epithelial-Mesenchymal Transition based on Single Cell Transcriptomic Data. ICBBB 2022: 57-62 - [c29]Akihiro Nomura, Hideo Matsuda:
Inference of Cell-Cell Communication for Detecting Immune Disease-Associated Signaling Pathways using Single-Cell RNA-seq. ICBBE 2022: 74-80 - [c28]Keigo Masuda, Yoshiaki Sota, Hideo Matsuda:
A Novel Method for Fusion Gene Detection using Both End-Fragment Sequences of Long Reads. ICBBE 2022: 88-92 - 2021
- [c27]Kenji Fujimoto, Tsubasa Mizugaki, Utkrisht Rajkumar, Hironori Shigeta, Shigeto Seno, Yutaka Uchida, Masaru Ishii, Vineet Bafna, Hideo Matsuda:
A CNN-based cell tracking method for multi-slice intravital imaging data. BCB 2021: 35:1-35:7
2010 – 2019
- 2019
- [j23]Yoshiaki Sota, Shigeto Seno, Hironori Shigeta, Naoki Osato, Masafumi Shimoda, Shinzaburo Noguchi, Hideo Matsuda:
Improvement of detection performance of fusion genes from RNA-seq data by clustering short reads. J. Bioinform. Comput. Biol. 17(3): 1940008:1-1940008:12 (2019) - [j22]Viacheslav Kapilevich, Shigeto Seno, Hideo Matsuda, Yoichi Takenaka:
Chromatin 3D Reconstruction from Chromosomal Contacts Using a Genetic Algorithm. IEEE ACM Trans. Comput. Biol. Bioinform. 16(5): 1620-1626 (2019) - [c26]Hironori Shigeta, Shigeto Seno, Shino Nishizawa, Yutaka Uchida, Junichi Kikuta, Masaru Ishii, Hideo Matsuda:
Analyzing Leukocyte Migration Trajectories by Deformable Image Matching. BIBE 2019: 94-98 - [c25]Naoki Osato, Hironori Shigeta, Shigeto Seno, Yutaka Uchida, Junichi Kikuta, Masaru Ishii, Hideo Matsuda:
Single-cell Transcriptome Analysis of Mouse Leukocytes in Inflammatory Stimulation. BIBM 2019: 1229-1231 - 2018
- [j21]Yoichi Takenaka, Kazuma Mikami, Shigeto Seno, Hideo Matsuda:
Automated transition analysis of activated gene regulation during diauxic nutrient shift in Escherichia coli and adipocyte differentiation in mouse cells. BMC Bioinform. 19-S(4): 49-59 (2018) - [c24]Yoshiaki Sota, Shigeto Seno, Hironori Shigeta, Naoki Osato, Masafumi Shimoda, Shinzaburo Noguchi, Hideo Matsuda:
Detection of Fusion Genes from Human Breast Cancer Cell-Line RNA-Seq Data Using Shifted Short Read Clustering. BIBE 2018: 159-162 - [c23]Mitsuhiro Eto, Wataru Hirota, Shigeto Seno, Hideo Matsuda:
Asymmetric Integration of Single-Cell Transcriptomic Data using Latent Dirichlet Allocation and Procrustes Analysis. BIBM 2018: 2129-2135 - 2017
- [j20]Hironori Shigeta, Tomohiro Mashita, Junichi Kikuta, Shigeto Seno, Haruo Takemura, Masaru Ishii, Hideo Matsuda:
Bone marrow cavity segmentation using graph-cuts with wavelet-based texture feature. J. Bioinform. Comput. Biol. 15(5): 1740004:1-1740004:16 (2017) - 2016
- [c22]Yoshiaki Sota, Shigeto Seno, Yoichi Takenaka, Shinzaburo Noguchi, Hideo Matsuda:
Comparative Analysis of Transformation Methods for Gene Expression Profiles in Breast Cancer Datasets. BIBE 2016: 328-333 - [c21]Hironori Shigeta, Tomohiro Mashita, Junichi Kikuta, Shigeto Seno, Haruo Takemura, Hideo Matsuda, Masaru Ishii:
A bone marrow cavity segmentation method using wavelet-based texture feature. ICPR 2016: 2133-2138 - 2015
- [j19]Yoichi Takenaka, Shigeto Seno, Hideo Matsuda:
Detecting shifts in gene regulatory networks during time-course experiments at single-time-point temporal resolution. J. Bioinform. Comput. Biol. 13(5): 1543002:1-1543002:18 (2015) - 2014
- [c20]Hironori Shigeta, Tomohiro Mashita, Takeshi Kaneko, Junichi Kikuta, Shigeto Seno, Haruo Takemura, Hideo Matsuda, Masaru Ishii:
A Graph Cuts Image Segmentation Method for Quantifying Barrier Permeation in Bone Tissue. I3A@ICPR 2014: 16-19 - [c19]Tomohiro Mashita, Jun Usam, Hironori Shigeta, Yoshihiro Kuroda, Junichi Kikuta, Shigeto Seno, Masaru Ishii, Hideo Matsuda, Haruo Takemura:
A Segmentation Method for Bone Marrow Cavity Imaging Using Graph Cuts. I3A@ICPR 2014: 20-23 - 2012
- [j18]Yukito Watanabe, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda:
An estimation method for inference of gene regulatory net-work using Bayesian network with uniting of partial problems. BMC Genom. 13(S-1): S12 (2012) - [j17]Tomoshige Ohno, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda:
A Method for Isoform Prediction from RNA-Seq Data by Iterative Mapping. Inf. Media Technol. 7(2): 921-927 (2012) - 2010
- [j16]Tatsuya Yoshikawa, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda:
Improved Prediction Method for Protein Interactions Using Both Structural and Functional Characteristics of Proteins. Inf. Media Technol. 5(2): 489-502 (2010)
2000 – 2009
- 2009
- [j15]Takeru Nakazato, Hidemasa Bono, Hideo Matsuda, Toshihisa Takagi:
Gendoo: Functional profiling of gene and disease features using MeSH vocabulary. Nucleic Acids Res. 37(Web-Server-Issue): 166-169 (2009) - 2008
- [j14]Takeru Nakazato, Toru Takinaka, Hironori Mizuguchi, Hideo Matsuda, Hidemasa Bono, Minoru Asogawa:
BioCompass: A Novel Functional Inference Tool that Utilizes MeSH Hierarchy to Analyze Groups of Genes. Silico Biol. 8(1): 53-61 (2008) - 2007
- [j13]Sami Maekawa, Atsuko Matsumoto, Yoichi Takenaka, Hideo Matsuda:
Tissue-specific functions based on information content of gene ontology using cap analysis gene expression. Medical Biol. Eng. Comput. 45(11): 1029-1036 (2007) - 2005
- [c18]Hideo Matsuda:
A Grid Environment for Data Integration of Scientific Databases. e-Science 2005: 3-4 - [c17]Gen Kawamura, Masato Kitajima, Kentaro Wakatsuki, Takehiro Furudate, Takahiro Kosaka, Kazuto Yamazaki, Reiji Teramoto, Susumu Date, Shinji Shimojo, Hideo Matsuda:
A Grid-based Information Integration System for Drug Discovery. ICDE Workshops 2005: 1167 - [c16]Takahiro Kosaka, Susumu Date, Hideo Matsuda, Shinji Shimojo:
Designing a Rule-Based Environment to Interoperate Life-Scientific Ontologies for Drug Discovery. SAINT Workshops 2005: 324-327 - 2004
- [j12]Hideya Kawaji, Yoichi Takenaka, Hideo Matsuda:
Graph-based clustering for finding distant relationships in a large set of protein sequences. Bioinform. 20(2): 243-252 (2004) - [j11]Takeshi Nagashima, Hideo Matsuda, Diego G. Silva, Nikolai Petrovsky, Akihiko Konagaya, Christian Schönbach:
FREP: a database of functional repeats in mouse cDNAs. Nucleic Acids Res. 32(Database-Issue): 471-475 (2004) - [j10]Haruki Nakamura, Susumu Date, Hideo Matsuda, Shinji Shimojo:
A Challenge towards Next-Generation Research Infrastructure for Advanced Life Science. New Gener. Comput. 22(2): 157-166 (2004) - [c15]Kohei Taki, Reiji Teramoto, Yoichi Takenaka, Hideo Matsuda:
Inference of Gene Regulatory Network Based on Module Network Model with Gene Functional Classifications. CSB 2004: 632-633 - [c14]Shoko Miyake, Yoichi Takenaka, Hideo Matsuda:
A Graph Analysis Method to Detect Metabolic Sub-Networks Based on Phylogenetic Profile. CSB 2004: 634-635 - [c13]Yukako Tohsato, Takahiro Kosaka, Susumu Date, Shinji Shimojo, Hideo Matsuda:
Heterogeneous Database Federation Using Grid Technology for Drug Discovery Process. LSGRID 2004: 43-52 - 2003
- [j9]Takeya Kasukawa, Hidemasa Bono, Yoshihide Hayashizaki, Yasushi Okazaki, Hideo Matsuda:
MaXML: mouse annotation XML. Silico Biol. 4(1): 7-15 (2003) - [c12]Shoko Miyake, Yukako Tohsato, Yoichi Takenaka, Hideo Matsuda:
Clustering Method for Comparative Analysis between Genomes and Pathways. DASFAA 2003: 327-334 - 2002
- [j8]Kentaro Onizuka, Tamotsu Noguchi, Yutaka Akiyama, Hideo Matsuda:
Using Data Compression for Multidimensional Distribution Analysis. IEEE Intell. Syst. 17(3): 48-54 (2002) - [c11]Shoko Miyake, Yukako Tohsato, Hideo Matsuda:
An Application of a Pathway Alignment Method to Comparative Analysis between Genome and Pathways. CSB 2002: 329-329 - [c10]Shigeto Seno, Reiji Teramoto, Hideo Matsuda:
P-quasi Complete Linkage Analysis for Gene-Expression Data. CSB 2002: 342 - 2001
- [j7]Tamotsu Noguchi, Hideo Matsuda, Yutaka Akiyama:
PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB). Nucleic Acids Res. 29(1): 219-220 (2001) - 2000
- [j6]Tamotsu Noguchi, Kentaro Onizuka, Makoto Ando, Hideo Matsuda, Yutaka Akiyama:
Quick selection of representative protein chain sets based on customizable requirements. Bioinform. 16(6): 520-526 (2000) - [j5]Takeya Kasukawa, Michio Nakanishi, Hideo Matsuda, Akihiro Hashimoto:
An efficient procedure for maintaining materialized views on distributed database systems. Syst. Comput. Jpn. 31(5): 86-96 (2000) - [c9]Yukako Tohsato, Hideo Matsuda, Akihiro Hashimoto:
A Multiple Alignment Algorithm for Metabolic Pathway Analysis Using Enzyme Hierarchy. ISMB 2000: 376-383 - [c8]Makoto Ando, Yutaka Akiyama, Hideo Matsuda:
Hierarchical Approach to Parallel Tree Search for Protein Conformational Analysis. PDPTA 2000
1990 – 1999
- 1999
- [j4]Hideo Matsuda, T. Ishihara, Akihiro Hashimoto:
Classifying Molecular Sequences Using a Linkage Graph With Their Pairwise Similarities. Theor. Comput. Sci. 210(2): 305-325 (1999) - 1995
- [c7]Hironori Nakajo, Takashi Matsumoto, Masaki Kohata, Hideo Matsuda, Kei Hiraki, Yukio Kaneda:
High Performance I/O System of the Distributed Shared-Memory Massively Parallel Computer JUMP-1. Parallel and Distributed Computing and Systems 1995: 470-473 - 1994
- [j3]Gary J. Olsen, Hideo Matsuda, Ray Hagstrom, Ross A. Overbeek:
fastDNAmL: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput. Appl. Biosci. 10(1): 41-48 (1994) - [j2]Hideo Matsuda, Yukio Kaneda:
An Application of an OR-Parallel Prolog Systemto Phylogenetic Analysis. LISP Symb. Comput. 7(2-3): 211-229 (1994) - [c6]Hideo Matsuda, Gary J. Olsen, Ross A. Overbeek, Yukio Kaneda:
Fast phylogenetic analysis on a massively parallel machine. International Conference on Supercomputing 1994: 297-302 - [c5]Kei Hiraki, Hideharu Amano, Morihiro Kuga, Toshinori Sueyoshi, Tomohiro Kudoh, Hiroshi Nakashima, Hironori Nakajo, Hideo Matsuda, Takashi Matsumoto, Shin-ichiro Mori:
Overview of the JUMP-1, an MPP prototype for general-purpose parallel computations. ISPAN 1994: 427-434 - 1992
- [c4]Yukio Kaneda, Hideo Matsuda, Shigeo Suzuka:
A Priority Control System for OR-Parallel Prolog and Its Performance Evaluation. Parallel Symbolic Computing 1992: 42-53
1980 – 1989
- 1987
- [c3]Hideo Matsuda, M. Kohata, T. Masuo, Yukio Kaneda, Sadao Maekawa:
Implementing Parallel Prolog System on Multiprocessor System PARK. IWDM 1987: 599-612 - 1986
- [j1]Yukio Kaneda, Naoyuki Tamura, Koichi Wada, Hideo Matsuda, Shumin Kuo, Sadao Maekawa:
Sequential Prolog Machine PEK. New Gener. Comput. 4(1): 51-66 (1986) - 1985
- [c2]Hideo Matsuda, M. Kohata, T. Masuo, Yukio Kaneda, Sadao Maekawa:
Parallel Prolog Machine PARK: Its Hardware Structure and Prolog System. LP 1985: 35-43 - 1984
- [c1]Naoyuki Tamura, Koichi Wada, Hideo Matsuda, Yukio Kaneda, Sadao Maekawa:
Sequential Prolog Machine PEK. FGCS 1984: 542-550
Coauthor Index
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from 
to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the 
of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from 
, 
, and 
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from 
.
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-09-06 00:39 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
