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Journal Articles
- 2021
[j12]Jordan M. Eizenga
, Adam M. Novak, Emily Kobayashi, Flavia Villani, Cecilia Cisar, Simon Heumos, Glenn Hickey, Vincenza Colonna, Benedict Paten, Erik Garrison:
Efficient dynamic variation graphs. Bioinform. 36(21): 5139-5144 (2021)- 2019
- [j11]Wolfgang Beyer, Adam M. Novak, Glenn Hickey, Jeffrey Chan, Vanessa Tan, Benedict Paten, Daniel R. Zerbino:
Sequence tube maps: making graph genomes intuitive to commuters. Bioinform. 35(24): 5318-5320 (2019) - 2018
- [j10]Benedict Paten, Jordan M. Eizenga, Yohei M. Rosen, Adam M. Novak, Erik Garrison, Glenn Hickey:
Superbubbles, Ultrabubbles, and Cacti. J. Comput. Biol. 25(7): 649-663 (2018) - 2016
- [j9]Daniel R. Zerbino, Tracy Ballinger, Benedict Paten, Glenn Hickey, David Haussler:
Representing and decomposing genomic structural variants as balanced integer flows on sequence graphs. BMC Bioinform. 17: 400 (2016) - 2015
- [j8]Ngan Nguyen, Glenn Hickey, Daniel R. Zerbino, Brian J. Raney, Dent Earl, Joel Armstrong, W. James Kent, David Haussler, Benedict Paten:
Building a Pan-Genome Reference for a Population. J. Comput. Biol. 22(5): 387-401 (2015) - [j7]Kate R. Rosenbloom, Joel Armstrong, Galt P. Barber, Jonathan Casper, Hiram Clawson, Mark Diekhans, Timothy R. Dreszer, Pauline A. Fujita, Luvina Guruvadoo, Maximilian Haeussler, Rachel A. Harte, Steven G. Heitner, Glenn Hickey, Angie S. Hinrichs, Robert Hubley, Donna Karolchik, Katrina Learned, Brian T. Lee, Chin H. Li, Karen H. Miga, Ngan Nguyen, Benedict Paten, Brian J. Raney, Arian F. A. Smit, Matthew L. Speir, Ann S. Zweig, David Haussler, Robert M. Kuhn, W. James Kent:
The UCSC Genome Browser database: 2015 update. Nucleic Acids Res. 43(Database-Issue): 670-681 (2015) - 2014
- [j6]Ngan Nguyen, Glenn Hickey, Brian J. Raney, Joel Armstrong, Hiram Clawson, Ann S. Zweig, Donna Karolchik, William James Kent, David Haussler, Benedict Paten:
Comparative assembly hubs: Web-accessible browsers for comparative genomics. Bioinform. 30(23): 3293-3301 (2014) - [j5]Benedict Paten, Daniel R. Zerbino, Glenn Hickey, David Haussler:
A unifying model of genome evolution under parsimony. BMC Bioinform. 15: 206 (2014) - 2013
- [j4]Glenn Hickey, Benedict Paten, Dent Earl, Daniel R. Zerbino, David Haussler:
HAL: a hierarchical format for storing and analyzing multiple genome alignments. Bioinform. 29(10): 1341-1342 (2013) - 2011
- [j3]Glenn Hickey, Mathieu Blanchette:
A Probabilistic Model for Sequence Alignment with Context-Sensitive Indels. J. Comput. Biol. 18(11): 1449-1464 (2011) - [j2]Glenn Hickey, Mathieu Blanchette, Paz Carmi, Anil Maheshwari, Norbert Zeh:
An Approximation Algorithm for the Noah's Ark Problem with Random Feature Loss. IEEE ACM Trans. Comput. Biol. Bioinform. 8(2): 551-556 (2011) - 2010
- [j1]Frank K. H. A. Dehne, Glenn Hickey, Andrew Rau-Chaplin, Mark Byrne:
Parallel catastrophe modelling on a Cell/BE. Int. J. Parallel Emergent Distributed Syst. 25(5): 401-410 (2010)
Conference and Workshop Papers
- 2017
- [c7]Benedict Paten, Adam M. Novak, Erik Garrison, Glenn Hickey:
Superbubbles, Ultrabubbles and Cacti. RECOMB 2017: 173-189 - 2014
- [c6]Ngan Nguyen, Glenn Hickey, Daniel R. Zerbino, Brian J. Raney, Dent Earl, Joel Armstrong, David Haussler, Benedict Paten:
Building a Pangenome Reference for a Population. RECOMB 2014: 207-221 - 2011
- [c5]Glenn Hickey, Mathieu Blanchette:
A Probabilistic Model for Sequence Alignment with Context-Sensitive Indels. RECOMB 2011: 85-103 - 2010
- [c4]Glenn Hickey, Mathieu Blanchette:
A Practical Algorithm for Estimation of the Maximum Likelihood Ancestral Reconstruction Error. Pacific Symposium on Biocomputing 2010: 31-42 - 2009
- [c3]Frank K. H. A. Dehne, Glenn Hickey, Andrew Rau-Chaplin, Mark Byrne:
Parallel catastrophe modelling on a cell processor. CASCON 2009: 24-31 - 2008
- [c2]Glenn Hickey, Paz Carmi, Anil Maheshwari, Norbert Zeh:
NAPX: A Polynomial Time Approximation Scheme for the Noah's Ark Problem. WABI 2008: 76-86 - 2005
- [c1]Christian Blouin, Davin Butt, Glenn Hickey, Andrew Rau-Chaplin:
Fast Parallel Maximum Likelihood-Based Protein Phylogeny. PDCS 2005: 281-287
Informal and Other Publications
- 2008
- [i1]Glenn Hickey, Paz Carmi, Anil Maheshwari, Norbert Zeh:
NAPX: A Polynomial Time Approximation Scheme for the Noah's Ark Problem. CoRR abs/0805.1661 (2008)
Coauthor Index
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