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ORCIDErik Garrison
Person information
- affiliation: University of Tennessee, Health Science Center, Memphis, TN, USA
- affiliation: Wellcome Trust Sanger Institute, Cambridge, UK
- affiliation: University of California, Santa Cruz, CA, USA
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2020 – today
- 2023
[j13]Erik Garrison, Andrea Guarracino
:
Unbiased pangenome graphs. Bioinform. 39(1) (2023)- [j12]Santiago Marco-Sola, Jordan M. Eizenga, Andrea Guarracino, Benedict Paten, Erik Garrison, Miquel Moretó:
Optimal gap-affine alignment in O(s) space. Bioinform. 39(2) (2023) - [j11]Bryce Kille, Erik Garrison, Todd J. Treangen, Adam M. Phillippy:
Minmers are a generalization of minimizers that enable unbiased local Jaccard estimation. Bioinform. 39(9) (2023) - [c5]Njagi Moses Mwaniki, Erik Garrison, Nadia Pisanti:
Fast Exact String to D-Texts Alignments. BIOINFORMATICS 2023: 70-79 - 2022
- [j10]Andrea Guarracino, Simon Heumos, Sven Nahnsen, Pjotr Prins, Erik Garrison:
ODGI: understanding pangenome graphs. Bioinform. 38(13): 3319-3326 (2022) - [j9]Erik Garrison, Zev N. Kronenberg, Eric T. Dawson, Brent S. Pedersen, Pjotr Prins:
A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar. PLoS Comput. Biol. 18(5) (2022) - [i2]Njagi Moses Mwaniki, Erik Garrison, Nadia Pisanti:
Fast Exact String to D-Texts Alignments. CoRR abs/2206.03242 (2022) - 2021
- [j8]Jordan M. Eizenga, Adam M. Novak, Emily Kobayashi, Flavia Villani, Cecilia Cisar, Simon Heumos, Glenn Hickey, Vincenza Colonna, Benedict Paten, Erik Garrison:
Efficient dynamic variation graphs. Bioinform. 36(21): 5139-5144 (2021) - [j7]Manuel Tognon, Vincenzo Bonnici, Erik Garrison, Rosalba Giugno, Luca Pinello:
GRAFIMO: Variant and haplotype aware motif scanning on pangenome graphs. PLoS Comput. Biol. 17(9) (2021) - 2020
- [j6]Jouni Sirén, Erik Garrison, Adam M. Novak, Benedict Paten, Richard Durbin:
Haplotype-aware graph indexes. Bioinform. 36(2): 400-407 (2020)
2010 – 2019
- 2019
- [j5]Eric T. Dawson, Sarah Wagner, David Roberson, Meredith Yeager, Joseph Boland, Erik Garrison, Stephen J. Chanock, Mark Schiffman, Tina Raine-Bennett, Thomas Lorey, Phillip E. Castle, Lisa Mirabello, Richard Durbin:
Viral coinfection analysis using a MinHash toolkit. BMC Bioinform. 20(1): 389:1-389:10 (2019) - [c4]Vincenzo Carletti, Pasquale Foggia, Erik Garrison, Luca Greco, Pierluigi Ritrovato, Mario Vento:
Graph-Based Representations for Supporting Genome Data Analysis and Visualization: Opportunities and Challenges. GbRPR 2019: 237-246 - 2018
- [j4]Shilpa Garg, Mikko Rautiainen, Adam M. Novak, Erik Garrison, Richard Durbin, Tobias Marschall:
A graph-based approach to diploid genome assembly. Bioinform. 34(13): i105-i114 (2018) - [j3]Benedict Paten, Jordan M. Eizenga, Yohei M. Rosen, Adam M. Novak, Erik Garrison, Glenn Hickey:
Superbubbles, Ultrabubbles, and Cacti. J. Comput. Biol. 25(7): 649-663 (2018) - [c3]Jouni Sirén, Erik Garrison, Adam M. Novak, Benedict Paten, Richard Durbin:
Haplotype-aware graph indexes. WABI 2018: 4:1-4:13 - [i1]Jouni Sirén, Erik Garrison, Adam M. Novak, Benedict Paten, Richard Durbin:
Haplotype-aware graph indexes. CoRR abs/1805.03834 (2018) - 2017
- [j2]Adam M. Novak, Erik Garrison, Benedict Paten:
A graph extension of the positional Burrows-Wheeler transform and its applications. Algorithms Mol. Biol. 12(1): 18:1-18:12 (2017) - [c2]Benedict Paten, Adam M. Novak, Erik Garrison, Glenn Hickey:
Superbubbles, Ultrabubbles and Cacti. RECOMB 2017: 173-189 - 2016
- [c1]Adam M. Novak, Erik Garrison, Benedict Paten:
A Graph Extension of the Positional Burrows-Wheeler Transform and Its Applications. WABI 2016: 246-256 - 2011
- [j1]Derek W. Barnett, Erik K. Garrison, Aaron R. Quinlan, Michael Strömberg, Gabor T. Marth:
BamTools: a C++ API and toolkit for analyzing and managing BAM files. Bioinform. 27(12): 1691-1692 (2011)
Coauthor Index
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