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Semantic Scholar15. RECOMB 2011: Vancouver, BC, Canada
Vineet Bafna, Süleyman Cenk Sahinalp:
Research in Computational Molecular Biology - 15th Annual International Conference, RECOMB 2011, Vancouver, BC, Canada, March 28-31, 2011. Proceedings. Lecture Notes in Computer Science 6577, Springer 2011, ISBN 978-3-642-20035-9Amnon Amir, Or Zuk:
Bacterial Community Reconstruction Using Compressed Sensing. 1-15Swapnil Bhatia, Yong J. Kil, Beatrix Ueberheide, Brian Chait, Lemmuel L. Tayo, Lourdes J. Cruz, Bingwen Lu, John R. Yates III, Marshall W. Bern:
Constrained De Novo Sequencing of Peptides with Application to Conotoxins. 16-30Leonid Chindelevitch, Aviv Regev, Bonnie Berger:
Metabolic Network Analysis Demystified. 31-33Leonid Chindelevitch, Daniel Ziemek, Ahmed Enayetallah, Ranjit Randhawa, Ben Sidders, Christoph Brockel, Enoch S. Huang:
Causal Reasoning on Biological Networks: Interpreting Transcriptional Changes - (Extended Abstract). 34-37Nilgun Donmez, Michael Brudno:
Hapsembler: An Assembler for Highly Polymorphic Genomes. 38-52Jason Ernst, Manolis Kellis:
Discovery and Characterization of Chromatin States for Systematic Annotation of the Human Genome. 53Sinan Erten, Gürkan Bebek, Mehmet Koyutürk:
Disease Gene Prioritization Based on Topological Similarity in Protein-Protein Interaction Networks. 54-68Irit Gat-Viks, Renana Meller, Martin Kupiec, Ron Shamir:
Understanding Gene Sequence Variation in the Context of Transcription Regulation in Yeast. 69Allison P. Heath, George N. Bennett, Lydia E. Kavraki:
Identifying Branched Metabolic Pathways by Merging Linear Metabolic Pathways. 70-84Glenn Hickey, Mathieu Blanchette:
A Probabilistic Model for Sequence Alignment with Context-Sensitive Indels. 85-103Fereydoun Hormozdiari, Iman Hajirasouliha, Andrew W. McPherson, Evan E. Eichler, Süleyman Cenk Sahinalp:
Simultaneous Structural Variation Discovery in Multiple Paired-End Sequenced Genomes. 104-105Jim C. Huang, Nebojsa Jojic:
Variable Selection through Correlation Sifting. 106-123Shuai Jiang, Max A. Alekseyev:
Weighted Genomic Distance Can Hardly Impose a Bound on the Proportion of Transpositions. 124-133Jaebum Kim, Jian Ma:
PSAR: Measuring Multiple Sequence Alignment Reliability by Probabilistic Sampling - (Extended Abstract). 134-135Bonnie Kirkpatrick, Shuai Cheng Li, Richard M. Karp, Eran Halperin:
Pedigree Reconstruction Using Identity by Descent. 136-152Sooraj KuttyKrishnan, Jeffrey Sabina, Laura Langton, Mark Johnston, Michael R. Brent:
A Quantitative Model of Glucose Signaling in Yeast Reveals an Incoherent Feed Forward Loop Leading to a Specific, Transient Pulse of Transcription. 153Mark D. M. Leiserson, Diana Tatar, Lenore J. Cowen, Benjamin J. Hescott:
Inferring Mechanisms of Compensation from E-MAP and SGA Data Using Local Search Algorithms for Max Cut. 154-167Wei Li, Jianxing Feng, Tao Jiang:
IsoLasso: A LASSO Regression Approach to RNA-Seq Based Transcriptome Assembly - (Extended Abstract). 168-188Xin Li, Jing Li:
Haplotype Reconstruction in Large Pedigrees with Many Untyped Individuals. 189-203Tien-ho Lin, Ziv Bar-Joseph, Robert F. Murphy:
Learning Cellular Sorting Pathways Using Protein Interactions and Sequence Motifs. 204-221Jeffrey W. Martin, Anthony K. Yan, Chris Bailey-Kellogg, Pei Zhou, Bruce Randall Donald:
A Geometric Arrangement Algorithm for Structure Determination of Symmetric Protein Homo-oligomers from NOEs and RDCs. 222-237Paul Medvedev, Son K. Pham, Mark Chaisson, Glenn Tesler, Pavel A. Pevzner:
Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers. 238-251Navodit Misra, Guy E. Blelloch, R. Ravi, Russell Schwartz:
An Optimization-Based Sampling Scheme for Phylogenetic Trees. 252-266Hosein Mohimani, Wei-Ting Liu, Yu-Liang Yang, Susana P. Gaudêncio, William Fenical, Pieter C. Dorrestein, Pavel A. Pevzner:
Multiplex De Novo Sequencing of Peptide Antibiotics. 267-281Joe Nadeau:
Fractal and Transgenerational Genetic Effects on Phenotypic Variation and Disease Risk. 282Daniel Newkirk, Jacob Biesinger, Alvin Chon, Kyoko Yokomori, Xiaohui Xie:
AREM: Aligning Short Reads from ChIP-Sequencing by Expectation Maximization. 283-297Julio Ng, Amihood Amir, Pavel A. Pevzner:
Blocked Pattern Matching Problem and Its Applications in Proteomics. 298-319William Stafford Noble, Zhi-jun Duan, Mirela Andronescu, Kevin Schutz, Sean McIlwain, Yoo Jung Kim, Choli Lee, Jay Shendure, Stanley Fields, C. Anthony Blau:
A Three-Dimensional Model of the Yeast Genome. 320Andrew S. Parker, Karl E. Griswold, Chris Bailey-Kellogg:
Optimization of Combinatorial Mutagenesis. 321-335Hanchuan Peng, Fuhui Long:
Seeing More Is Knowing More: V3D Enables Real-Time 3D Visualization and Quantitative Analysis of Large-Scale Biological Image Data Sets. 336Yu Peng, Henry C. M. Leung, Siu-Ming Yiu, Francis Y. L. Chin:
T-IDBA: A de novo Iterative de Bruijn Graph Assembler for Transcriptome - (Extended Abstract). 337-338Tobias Petri, Robert Küffner, Ralf Zimmer:
Experiment Specific Expression Patterns. 339-354Yosef Prat, Menachem Fromer, Michal Linial, Nathan Linial:
Geometric Interpretation of Gene Expression by Sparse Reconstruction of Transcript Profiles. 355-357Shlomi Reuveni, Isaac Meilijson, Martin Kupiec, Eytan Ruppin, Tamir Tuller:
A Ribosome Flow Model for Analyzing Translation Elongation - (Extended Abstract). 358-360Kyle E. Roberts, Patrick R. Cushing, Prisca Boisguerin, Dean R. Madden, Bruce Randall Donald:
Design of Protein-Protein Interactions with a Novel Ensemble-Based Scoring Algorithm. 361-376Kerstin Scheubert, Franziska Hufsky, Florian Rasche, Sebastian Böcker:
Computing Fragmentation Trees from Metabolite Multiple Mass Spectrometry Data. 377-391Emre Sefer, Carl Kingsford:
Metric Labeling and Semi-metric Embedding for Protein Annotation Prediction. 392-407Solomon Shenker, Charles W. O'Donnell, Srinivas Devadas, Bonnie Berger, Jérôme Waldispühl:
Efficient Traversal of Beta-Sheet Protein Folding Pathways Using Ensemble Models. 408-423Dana Silverbush, Michael Elberfeld, Roded Sharan:
Optimally Orienting Physical Networks. 424-436Song Gao, Niranjan Nagarajan, Wing-Kin Sung:
Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences. 437-451Jae Hoon Sul, Buhm Han, Eleazar Eskin:
Increasing Power of Groupwise Association Test with Likelihood Ratio Test. 452-467Ryan Tarpine, Fumei Lam, Sorin Istrail:
Conservative Extensions of Linkage Disequilibrium Measures from Pairwise to Multi-loci and Algorithms for Optimal Tagging SNP Selection. 468-482Chittaranjan Tripathy, Jianyang Zeng, Pei Zhou, Bruce Randall Donald:
Protein Loop Closure Using Orientational Restraints from NMR Data. 483-498Fabio Vandin, Eli Upfal, Benjamin J. Raphael:
De Novo Discovery of Mutated Driver Pathways in Cancer. 499-500Jérôme Waldispühl, Yann Ponty:
An Unbiased Adaptive Sampling Algorithm for the Exploration of RNA Mutational Landscapes under Evolutionary Pressure. 501-515Fabian L. Wauthier, Michael I. Jordan, Nebojsa Jojic:
Nonparametric Combinatorial Sequence Models. 516-530Yun Yu, Tandy J. Warnow, Luay Nakhleh:
Algorithms for MDC-Based Multi-locus Phylogeny Inference. 531-545Shay Zakov, Yoav Goldberg, Michael Elhadad, Michal Ziv-Ukelson:
Rich Parameterization Improves RNA Structure Prediction. 546-562Jianyang Zeng, Kyle E. Roberts, Pei Zhou, Bruce Randall Donald:
A Bayesian Approach for Determining Protein Side-Chain Rotamer Conformations Using Unassigned NOE Data. 563-578
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