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ORCIDThomas L. Casavant
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2020 – today
- 2022
[j31]Michael C. Rendleman, Brian J. Smith, Guadalupe Canahuate, Terry A. Braun, John M. Buatti
, Thomas L. Casavant:
Representative random sampling: an empirical evaluation of a novel bin stratification method for model performance estimation. Stat. Comput. 32(6): 101 (2022)
2010 – 2019
- 2019
- [j30]Michael C. Rendleman, John M. Buatti, Terry A. Braun, Brian J. Smith, Chibuzo Nwakama, Reinhard R. Beichel, Bartley Brown, Thomas L. Casavant:
Machine learning with the TCGA-HNSC dataset: improving usability by addressing inconsistency, sparsity, and high-dimensionality. BMC Bioinform. 20(1): 339:1-339:9 (2019) - 2017
- [c48]Yusung Kim, Kaustubh Anil Patwardhan, Reinhard R. Beichel, Brian J. Smith, Christopher Mart, Kristin A. Plichta, Tangel Chang, Milan Sonka, Michael M. Graham, Vince Magnotta, Thomas L. Casavant, Junyi Xia, John M. Buatti:
Development of a radiobiological evaluation tool to assess the expected clinical impacts of contouring accuracy between manual and semi-automated segmentation algorithms. EMBC 2017: 3409-3412 - 2015
- [j29]Corey W. Goodman, Heather J. Major, William D. Walls, Val C. Sheffield, Thomas L. Casavant, Benjamin W. Darbro:
CNV-ROC: A cost effective, computer-aided analytical performance evaluator of chromosomal microarrays. J. Biomed. Informatics 54: 106-113 (2015) - 2014
- [j28]Sean S. Ephraim, Nikhil Anand, Adam P. DeLuca, Kyle R. Taylor, Diana L. Kolbe, Allen C. Simpson, Hela Azaiez, Christina M. Sloan, A. Eliot Shearer, Andrea R. Hallier, Thomas L. Casavant, Todd E. Scheetz, Richard J. H. Smith, Terry A. Braun:
Cordova: Web-based management of genetic variation data. Bioinform. 30(23): 3438-3439 (2014) - 2013
- [j27]Kishore Nannapaneni, Yehuda Ben-Shahar, Henry L. Keen, Michael J. Welsh, Thomas L. Casavant, Todd E. Scheetz:
Computational identification of operon-like transcriptional loci in eukaryotes. Comput. Biol. Medicine 43(6): 738-743 (2013) - 2012
- [j26]Jinlu Cai, Henry L. Keen, Curt D. Sigmund, Thomas L. Casavant:
Coex-Rank: An approach incorporating co-expression information for combined analysis of microarray data. J. Integr. Bioinform. 9(1) (2012) - 2011
- [j25]Jesse D. Walters, Thomas B. Bair, Terry A. Braun, Todd E. Scheetz, John P. Robinson, Thomas L. Casavant:
Validation of computational prediction of horizontal gene transfer events - XenoCluster. J. Supercomput. 57(2): 141-150 (2011) - [c47]Kyle R. Taylor, Adam P. DeLuca, Corey W. Goodman, Bruce W. Tompkins, Todd E. Scheetz, Michael S. Hildebrand, Patrick L. M. Huygen, Richard J. H. Smith, Terry A. Braun, Thomas L. Casavant:
AudioGene: Computer-based prediction of genetic factors involved in non-syndromic hearing impairment. AICCSA 2011: 75-79 - [c46]Adam P. DeLuca, Alex H. Wagner, Kyle R. Taylor, Ben Faga, David Thole, Val C. Sheffield, Edwin M. Stone, Thomas L. Casavant, Todd E. Scheetz, Terry A. Braun:
Sequencing and disease variation detection tools and techniques. AICCSA 2011: 80-83
2000 – 2009
- 2009
- [c45]Jesse D. Walters, Thomas B. Bair, Terry A. Braun, Todd E. Scheetz, John P. Robinson, Thomas L. Casavant:
Multi-granularity Parallel Computing in a Genome-Scale Molecular Evolution Application. PaCT 2009: 49-59 - 2008
- [j24]Krishna R. Kalari, Thomas L. Casavant, Todd E. Scheetz:
A knowledge-based approach to predict intragenic deletions or duplications. Bioinform. 24(18): 1975-1979 (2008) - 2007
- [j23]Brian O'Leary, Steven G. Davis, Michael F. Smith, Bartley Brown, Mathew B. Kemp, Hakeem G. Almabrazi, Jason A. Grundstad, Thomas Burns, Vladimir Leontiev, Jeaneen Andorf, Abbot F. Clark, Val C. Sheffield, Thomas L. Casavant, Todd E. Scheetz, Edwin M. Stone, Terry A. Braun:
Transcript Annotation Prioritization and Screening System (TRApss) for Mutation Screening. J. Bioinform. Comput. Biol. 5(6): 1155-1172 (2007) - 2006
- [j22]Krishna R. Kalari, Melanie Casavant, Thomas B. Bair, Henry L. Keen, Josep M. Comeron, Thomas L. Casavant, Todd E. Scheetz:
First Exons and Introns - A Survey of GC Content and Gene Structure in the Human Genome. Silico Biol. 6(3): 237-242 (2006) - 2005
- [j21]Todd E. Scheetz, Nishank Trivedi, Kevin T. Pedretti, Terry A. Braun, Thomas L. Casavant:
Gene transcript clustering: a comparison of parallel approaches. Future Gener. Comput. Syst. 21(4): 731-735 (2005) - [c44]Jesse D. Walters, Thomas L. Casavant, John P. Robinson, Thomas B. Bair, Terry A. Braun, Todd E. Scheetz:
XenoCluster: A Grid Computing Approach to Finding Ancient Evolutionary Genetic Anomalies. PaCT 2005: 355-366 - 2003
- [j20]Todd E. Scheetz, Nishank Trivedi, Chad A. Roberts, Tamara Kucaba, Brian Berger, Natalie L. Robinson, Clayton L. Birkett, Allen J. Gavin, Brian O'Leary, Terry A. Braun, Maria F. Bonaldo, John P. Robinson, Val C. Sheffield, Marcelo Bento Soares, Thomas L. Casavant:
ESTprep: Preprocessing CDNA Sequence Reads. Bioinform. 19(11): 1318-1324 (2003) - [j19]Terry A. Braun, Todd E. Scheetz, Gregg Webster, Abe Clark, Edwin M. Stone, Val C. Sheffield, Thomas L. Casavant:
Identifying Candidate Disease Genes with High-Performance Computing. J. Supercomput. 26(1): 7-24 (2003) - [c43]Nishank Trivedi, Kevin T. Pedretti, Terry A. Braun, Todd E. Scheetz, Thomas L. Casavant:
Alternative Parallelization Strategies in EST Clustering. PaCT 2003: 384-393 - 2002
- [j18]Allen J. Gavin, Todd E. Scheetz, Chad A. Roberts, Brian O'Leary, Terry A. Braun, Val C. Sheffield, Marcelo Bento Soares, John P. Robinson, Thomas L. Casavant:
Pooled library tissue tags for EST-based gene discovery. Bioinform. 18(9): 1162-1166 (2002) - [j17]Nishank Trivedi, Jared Bischof, Steve Davis, Kevin T. Pedretti, Todd E. Scheetz, Terry A. Braun, Chad A. Roberts, Natalie L. Robinson, Val C. Sheffield, Marcelo Bento Soares, Thomas L. Casavant:
Parallel creation of non-redundant gene indices from partial mRNA transcripts. Future Gener. Comput. Syst. 18(6): 863-870 (2002) - 2001
- [j16]R. C. Braun, Kevin T. Pedretti, Thomas L. Casavant, Todd E. Scheetz, Clayton L. Birkett, Chad A. Roberts:
Parallelization of local BLAST service on workstation clusters. Future Gener. Comput. Syst. 17(6): 745-754 (2001) - [j15]Thomas L. Casavant, Terry A. Braun, Sureshkumar Kaliannan, Todd E. Scheetz, Kyle J. Munn, Clayton L. Birkett:
A parallel/distributed architecture for hierarchically heterogeneous web-based cooperative applications. Future Gener. Comput. Syst. 17(6): 783-793 (2001) - [c42]Andrew B. Williams, Todd A. Krygowski, Thomas L. Casavant:
I-DOCS: Distributed Agent-Assisted Knowledge Fusion for Disease Gene Discovery. ICPADS 2001: 698-705 - [c41]Kevin T. Pedretti, Todd E. Scheetz, Terry A. Braun, Chad A. Roberts, Natalie L. Robinson, Thomas L. Casavant:
A Parallel Expressed Sequence Tag (EST) Clustering Program. PaCT 2001: 490-497
1990 – 1999
- 1999
- [c40]Thomas L. Casavant, Todd E. Scheetz, Terry A. Braun, Kyle J. Munn, Sureshkumar Kaliannan:
A Parallel/Distributed Srchitecture for Hierarcally Heterogeneous Web-Based Cooperative Applications. HPCN Europe 1999: 391-401 - [c39]Kevin T. Pedretti, Thomas L. Casavant, R. C. Braun, Todd E. Scheetz, Clayton L. Birkett, Chad A. Roberts:
Three Complementary Approaches to Parallelization of Local BLAST Service on Workstation Clusters (invited paper). PaCT 1999: 271-282 - 1998
- [j14]Todd E. Scheetz, Terry A. Braun, Kyle J. Munn, Edwin M. Stone, Val C. Sheffield, Thomas L. Casavant:
GenoMap: A Distributed System for Unifying Genotyping and Genetic Linkage Analysis. Parallel Comput. 24(9-10): 1567-1592 (1998) - 1997
- [j13]Volker Strumpen, Balkrishna Ramkumar, Thomas L. Casavant, Sudhakar M. Reddy:
Perspectives on high performance network computing. Future Gener. Comput. Syst. 12(5): 451-459 (1997) - [c38]Richard D. Dietz, Thomas L. Casavant, Todd E. Scheetz, Terry A. Braun, Mark S. Andersland:
Modeling the impact of run-time uncertainty on optimal computation scheduling using feedback. ICPP 1997: 481-488 - [c37]Richard D. Dietz, Thomas L. Casavant, Todd E. Scheetz, Terry A. Braun, Mark S. Andersland:
Using Run-Time Uncertainty to Robustly Schedule Parallel Computation. PaCT 1997: 13-24 - 1996
- [c36]Volker Strumpen, Balkrishna Ramkumar, Thomas L. Casavant, Sudhakar M. Reddy:
Perspectives for High Performance Computing in Workstation Networks. HPCN Europe 1996: 880-889 - [c35]Eugene V. Zima, Karthi R. Vadivelu, Thomas L. Casavant:
Mapping Techniques for Parallel Evaluation of Chains of Recurrences. IPPS 1996: 620-624 - [c34]Todd E. Scheetz, Julie A. Gannon, Richard D. Dietz, Terry A. Braun, Thomas L. Casavant, Mark S. Andersland:
Accounting for Uncertainty in the Recovers of Traces for Parallel Computing Systems. Parcella 1996: 206-213 - 1995
- [c33]Volker Strumpen, Thomas L. Casavant:
Implementing communication latency hiding in high-latency computer networks. HPCN Europe 1995: 86-93 - 1994
- [b1]Thomas L. Casavant, Mukesh Singhal:
Readings in distributed computing systems. IEEE 1994, ISBN 978-0-8186-3032-3, pp. I-X, 1-619 - [c32]Julie A. Gannon, K. J. Williams, Mark S. Andersland, J. E. Lummp Jr., Thomas L. Casavant:
Using Perturbation Tracking to Compensate for Intrusion in Message-Passing Systems. ICDCS 1994: 414-421 - [c31]Thomas L. Casavant, Chi-Yuan Chin, Wen-Tsuen Chen, Kang G. Shin, Earl E. Swartzlander Jr., Joseph E. Urban:
What Types of Research Papers Should We Be Writing? ICPADS 1994: 22-23 - [c30]Volker Strumpen, Thomas L. Casavant:
Exploting communication Latency Hiding for Parallel Network. ICPADS 1994: 620-627 - [c29]Julie A. Gannon, K. J. Williams, Mark S. Andersland, Thomas L. Casavant, J. E. Lummp Jr.:
Trace Recovery in Multi-Processing Systems: Architectural Considerations. ICPP (2) 1994: 99-102 - 1993
- [j12]Thomas L. Casavant:
Tools and Methods for Visualization of Parallel Systems and Computations - Guest Editor's Introduction. J. Parallel Distributed Comput. 18(2): 103-104 (1993) - [c28]D. L. Bright, Samuel A. Fineberg, Brent H. Pease, M. L. Roderick, S. Sundaram, Thomas L. Casavant:
Critical Performance Path Analysis, and Efficient Code Generation Issues, for the Seamless Architecture. IPPS 1993: 590-596 - [c27]Thomas L. Casavant, James Arthur Kohl:
The IMPROV Meta-Tool Design Methodology for Visualization of Parallel Programs. MASCOTS 1993: 22-27 - 1992
- [j11]Howard Jay Siegel, Seth Abraham, William L. Bain, Kenneth E. Batcher, Thomas L. Casavant, Doug DeGroot, Jack B. Dennis, David C. Douglas, Tse-Yun Feng, James R. Goodman, Alan Huang, Harry F. Jordan, J. Robert Jamp, Yale N. Patt, Alan Jay Smith, James E. Smith, Lawrence Snyder, Harold S. Stone, Russ Tuck, Benjamin W. Wah:
Report of the Purdue Workshop on Grand Challenges in Computer Architecture for the Support of High Performance Computing. J. Parallel Distributed Comput. 16(3): 199-211 (1992) - [j10]Mikhail J. Atallah, Christina Lock Black, Dan C. Marinescu, Howard Jay Siegel, Thomas L. Casavant:
Models and Algorithms for Coscheduling Compute-Intensive Tasks on a Network of Workstations. J. Parallel Distributed Comput. 16(4): 318-327 (1992) - [j9]Yiannis E. Papelis, Thomas L. Casavant:
Specification and Analysis of Parallel/Distributed Software and Systems by Petri Nets With Transition Enabling Functions. IEEE Trans. Software Eng. 18(3): 252-261 (1992) - [c26]James Arthur Kohl, Thomas L. Casavant:
A software engineering, visualization methodology for parallel processing systems. COMPSAC 1992: 51-56 - [c25]Samuel A. Fineberg, Thomas L. Casavant:
A Preliminary Performance Evaluation of the Seamless Parallel Processing System Architecture. ICPP (1) 1992: 280-284 - [c24]Samuel A. Fineberg, Thomas L. Casavant, Brent H. Pease:
The Seamless Approach to Reconciling Communication and Locality in Distributed-Memory Parallel Systems. IPPS 1992: 51-56 - [c23]Samuel A. Fineberg, Thomas L. Casavant, Brent H. Pease:
Seamless - a latency-tolerant RISC-based multiprocessor architecture. ISCA 1992: 432 - 1991
- [j8]James E. Lumpp Jr., Samuel A. Fineberg, Wayne G. Nation, Thomas L. Casavant, Edward C. Bronson, Howard Jay Siegel, Pierre H. Pero, Thomas Schwederski, Dan C. Marinescu:
CAPS: A Coding Aid For PASM. Commun. ACM 34(11): 104-117 (1991) - [j7]Mukesh Singhal, Thomas L. Casavant:
Distributed Computing Systems (Guest Editors' Introduction). Computer 24(8): 12-15 (1991) - [j6]Samuel A. Fineberg, Thomas L. Casavant, Howard Jay Siegel:
Experimental Analysis of a Mixed-Mode Parallel Architecture Using Bitonic Sequence Sorting. J. Parallel Distributed Comput. 11(3): 239-251 (1991) - [c22]James E. Lumpp Jr., Roger K. Shultz, Thomas L. Casavant:
Design of a system for software testing and debugging for multiprocessor avionics systems. COMPSAC 1991: 261-268 - [c21]Mikhail J. Atallah, Christina Lock, Dan C. Marinescu, Howard Jay Siegel, Thomas L. Casavant:
Co-scheduling compute-intensive tasks on a network of workstations: model and algorithms. ICDCS 1991: 344-352 - [c20]Thomas L. Casavant, Peter C. Bates, Thomas Bemmerl, Gary M. Koob, Daniel A. Reed, Zary Segall:
Debugging and performance monitoring for distributed systems: problems and prospects. ICDCS 1991: 378-383 - [c19]Mark S. Andersland, Thomas L. Casavant:
Recovering Unconrupted Event Traces from Corrupted Event Traces in Parallel/Distributed Computing Systems. ICPP (2) 1991: 108-112 - [c18]Yiannis E. Papelis, Thomas L. Casavant:
XPAT: An Interactive Graphical Tool for Synthesis of Concurrent Software Using Petri Nets. ICPP (2) 1991: 292-293 - [c17]James Arthur Kohl, Thomas L. Casavant:
Use of PARADISE: A Meta-Tool for Visualizing Parallel Systems. IPPS 1991: 561-567 - 1990
- [j5]Dan C. Marinescu, James E. Lumpp Jr., Thomas L. Casavant, Howard Jay Siegel:
Models for Monitoring and Debugging Tools for Parallel and Distributed Software. J. Parallel Distributed Comput. 9(2): 171-184 (1990) - [j4]Thomas L. Casavant, Jon G. Kuhl:
A Communicating Finite Automata Approach to Modeling Distributed Computation and Its Application to Distributed Decision-Making. IEEE Trans. Computers 39(5): 628-639 (1990) - [j3]Edward C. Bronson, Thomas L. Casavant, Leah H. Jamieson:
Experimental Application-Driven Architecture Analysis of an SIMD/MIMD Parallel Processing System. IEEE Trans. Parallel Distributed Syst. 1(2): 195-205 (1990) - [c16]Yiannis E. Papelis, Thomas L. Casavant:
Mathematical transformation of Petri-nets for development of parallel/distributed programs. COMPSAC 1990: 92-98 - [c15]James E. Lumpp Jr., Howard Jay Siegel, Dan C. Marinescu, Thomas L. Casavant:
Specification and Identification of Events for Debugging and Performance Monitoring of Distributed Multiprocessor Systems. ICDCS 1990: 476-483 - [c14]Thomas Schwederski, Howard Jay Siegel, Thomas L. Casavant:
Optimizing Task Migration Transfers Using Multistage Cube Networks. ICPP (1) 1990: 51-58 - [c13]Silvio Picano, Thomas L. Casavant:
An Experimental Analysis of Image Correlation on Shared versus Non-Shared Memory MIMD Parallel Computers. ICPP (3) 1990: 92-96 - [c12]Samuel A. Fineberg, Thomas L. Casavant, Howard Jay Siegel:
Experimental Analysis of a Mixed-Mode Parallel Architecture Performing Sequence Sorting. ICPP (3) 1990: 370-371 - [c11]Samuel A. Fineberg, Thomas L. Casavant, Howard Jay Siegel:
Experimental analysis of communication/data-conditional aspects of a mixed-mode parallel architecture via synthetic computations. SC 1990: 637-646
1980 – 1989
- 1989
- [c10]Michael A. McSherry, Thomas L. Casavant:
Software routing support for task migration in hypercube multiprocessor systems. COMPSAC 1989: 8-15 - [c9]Dan C. Marinescu, James E. Lumpp Jr., Thomas L. Casavant, Howard Jay Siegel:
A model for monitoring and debugging parallel and distributed software. COMPSAC 1989: 81-88 - [c8]Edward C. Bronson, Thomas L. Casavant, Leah H. Jamieson:
Experimental analysis of multi-mode fast Fourier transforms on the PASM parallel processing system. ICASSP 1989: 2540-2543 - [c7]Edward C. Bronson, Thomas L. Casavant, Leah H. Jamieson:
Experimental Application-Driven Architecture Analysis of an SIMD/MIMD Parallel Processing System. ICPP (1) 1989: 59-67 - [c6]Thomas Schwederski, Howard Jay Siegel, Thomas L. Casavant:
Task Migration Transfers in Multistage Cube Based Parallel Systems. ICPP (1) 1989: 296-305 - 1988
- [j2]Thomas L. Casavant, Jon G. Kuhl:
A Taxonomy of Scheduling in General-Purpose Distributed Computing Systems. IEEE Trans. Software Eng. 14(2): 141-154 (1988) - [j1]Thomas L. Casavant, Jon G. Kuhl:
Effects of Response and Stability on Scheduling in Distributed Computing Systems. IEEE Trans. Software Eng. 14(11): 1578-1588 (1988) - [c5]M. J. McPheters Jr., Thomas L. Casavant:
Experimental analysis of SIMD recursive digital filtering on the PASM system prototype. COMPSAC 1988: 26-32 - [c4]Thomas L. Casavant:
Low-level programming of parallel supercomputers. COMPSAC 1988: 274-275 - [c3]Samuel A. Fineberg, Thomas L. Casavant, Thomas Schwederski, Howard Jay Siegel:
Non-Deterministic Instruction Time Experiments on the PASM System Prototype. ICPP (1) 1988: 444-451 - 1987
- [c2]Thomas L. Casavant, Jon G. Kuhl:
Analysis of Three Dynamic Distributed Load-Balancing Strategies with Varying Global Information Requirements. ICDCS 1987: 185-193 - 1986
- [c1]Thomas L. Casavant, Jon G. Kuhl:
A Formal Model of Distributed Decision-Making and Its Application to Distributed Load Balancing. ICDCS 1986: 232-239
Coauthor Index
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