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ORCIDA. Ercüment Çiçek
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- unicode name: A. Ercüment Çiçek
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Journal Articles
- 2023
[j29]Gun Kaynar
, Doruk Cakmakci, Caroline Bund, Julien Todeschi, Izzie-Jacques Namer, A. Ercüment Çiçek:
PiDeeL: metabolic pathway-informed deep learning model for survival analysis and pathological classification of gliomas. Bioinform. 39(10) (2023)- [j28]Onur Can Uner, Halil Ibrahim Kuru, Ramazan Gokberk Cinbis, Öznur Tastan, A. Ercüment Çiçek:
DeepSide: A Deep Learning Approach for Drug Side Effect Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 20(1): 330-339 (2023) - 2022
- [j27]Serhan Yilmaz, Mohamad Fakhouri, Mehmet Koyutürk, A. Ercüment Çiçek, Öznur Tastan:
Uncovering complementary sets of variants for predicting quantitative phenotypes. Bioinform. 38(4): 908-917 (2022) - [j26]Doruk Cakmakci, Gun Kaynar, Caroline Bund, Martial Piotto, Francois Proust, Izzie-Jacques Namer, A. Ercüment Çiçek:
Targeted metabolomics analyses for brain tumor margin assessment during surgery. Bioinform. 38(12): 3238-3244 (2022) - [j25]Oya Ekin Karasan, Alper Sen, Banu Tiryaki, A. Ercüment Çiçek:
A unifying network modeling approach for codon optimization. Bioinform. 38(16): 3935-3941 (2022) - [j24]Ilayda Beyreli, Oguzhan Karakahya, A. Ercüment Çiçek:
DeepND: Deep multitask learning of gene risk for comorbid neurodevelopmental disorders. Patterns 3(7): 100524 (2022) - [j23]Halil Ibrahim Kuru, Öznur Tastan, A. Ercüment Çiçek:
MatchMaker: A Deep Learning Framework for Drug Synergy Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 19(4): 2334-2344 (2022) - 2021
- [j22]Gizem Caylak, Öznur Tastan, A. Ercüment Çiçek:
Potpourri: An Epistasis Test Prioritization Algorithm via Diverse SNP Selection. J. Comput. Biol. 28(4): 365-377 (2021) - [j21]Gizem Caylak, Öznur Tastan, A. Ercüment Çiçek:
A Tool for Detecting Complementary Single Nucleotide Polymorphism Pairs in Genome-Wide Association Studies for Epistasis Testing. J. Comput. Biol. 28(4): 378-380 (2021) - [j20]Kerem Ayoz, Erman Ayday, A. Ercüment Çiçek:
Genome Reconstruction Attacks Against Genomic Data-Sharing Beacons. Proc. Priv. Enhancing Technol. 2021(3): 28-48 (2021) - [j19]Serhan Yilmaz, Öznur Tastan, A. Ercüment Çiçek:
SPADIS: An Algorithm for Selecting Predictive and Diverse SNPs in GWAS. IEEE ACM Trans. Comput. Biol. Bioinform. 18(3): 1208-1216 (2021) - [j18]Furkan Ozden, Metin Can Siper, Necmi Acarsoy, Tugrulcan Elmas, Bryan Marty, Xinjian Qi, A. Ercüment Çiçek:
DORMAN: Database of Reconstructed MetAbolic Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 18(4): 1474-1480 (2021) - 2020
- [j17]Can Firtina, Jeremie S. Kim, Mohammed Alser, Damla Senol Cali, A. Ercüment Çiçek, Can Alkan, Onur Mutlu:
Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithm. Bioinform. 36(12): 3669-3679 (2020) - [j16]Doruk Cakmakci, Emin Onur Karakaslar, Elisa Ruhland, Marie-Pierre Chenard, Francois Proust, Martial Piotto, Izzie-Jacques Namer, A. Ercüment Çiçek:
Machine learning assisted intraoperative assessment of brain tumor margins using HRMAS NMR spectroscopy. PLoS Comput. Biol. 16(11) (2020) - [j15]Emin Onur Karakaslar, Baris Coskun, Hassiba Outilaft, Izzie-Jacques Namer, A. Ercüment Çiçek:
Predicting Carbon Spectrum in Heteronuclear Single Quantum Coherence Spectroscopy for Online Feedback During Surgery. IEEE ACM Trans. Comput. Biol. Bioinform. 17(2): 719-725 (2020) - 2019
- [j14]Nora von Thenen, Erman Ayday, A. Ercüment Çiçek:
Re-identification of individuals in genomic data-sharing beacons via allele inference. Bioinform. 35(3): 365-371 (2019) - [j13]Utku Norman, A. Ercüment Çiçek:
ST-Steiner: a spatio-temporal gene discovery algorithm. Bioinform. 35(18): 3433-3440 (2019) - 2015
- [j12]A. Ercüment Çiçek, Kathryn Roeder, Gultekin Özsoyoglu:
MIRA: mutual information-based reporter algorithm for metabolic networks. Bioinform. 31(7): 1160 (2015) - 2014
- [j11]Abdullah Ercument Cicek, Xinjian Qi, Ali Cakmak, Stephen R. Johnson, Xu Han, Sami Alshalwi, Zehra Meral Özsoyoglu, Gultekin Özsoyoglu:
An online system for metabolic network analysis. Database J. Biol. Databases Curation 2014 (2014) - [j10]A. Ercüment Çiçek, Kathryn Roeder, Gultekin Özsoyoglu:
MIRA: mutual information-based reporter algorithm for metabolic networks. Bioinform. 30(12): 175-184 (2014) - [j9]A. Ercüment Çiçek, Mehmet Ercan Nergiz, Yücel Saygin:
Ensuring location diversity in privacy-preserving spatio-temporal data publishing. VLDB J. 23(4): 609-625 (2014) - 2013
- [j8]Sarp A. Coskun, A. Ercüment Çiçek, Nicola Lai, Ranjan K. Dash, Z. Meral Özsoyoglu, Gultekin Özsoyoglu:
An online model composition tool for system biology models. BMC Syst. Biol. 7: 88 (2013) - [j7]Stephen R. Johnson, Xinjian Qi, A. Ercüment Çiçek, Gultekin Özsoyoglu:
iPathCaseKEGG: An iPad interface for KEGG metabolic pathways. Health Inf. Sci. Syst. 1(1): 4 (2013) - [j6]A. Ercüment Çiçek, Ilya Bederman, Leigh Henderson, Mitchell L. Drumm, Gultekin Özsoyoglu:
ADEMA: An Algorithm to Determine Expected Metabolite Level Alterations Using Mutual Information. PLoS Comput. Biol. 9(1) (2013) - 2012
- [j5]Sarp A. Coskun, Xinjian Qi, Ali Cakmak, En Cheng, A. Ercüment Çiçek, Lei Yang, Rishiraj Jadeja, Ranjan K. Dash, Nicola Lai, Gultekin Özsoyoglu, Z. Meral Özsoyoglu:
PathCase-SB: integrating data sources and providing tools for systems biology research. BMC Syst. Biol. 6: 67 (2012) - [j4]Ali Cakmak, Xinjian Qi, A. Ercüment Çiçek, Ilya Bederman, Leigh Henderson, Mitchell L. Drumm, Gultekin Özsoyoglu:
A New metabolomics Analysis Technique: steady-State metabolic Network Dynamics Analysis. J. Bioinform. Comput. Biol. 10(1) (2012) - [j3]A. Ercüment Çiçek, Gultekin Özsoyoglu:
Observation Conflict Resolution in steady-State metabolic Network Dynamics Analysis. J. Bioinform. Comput. Biol. 10(1) (2012) - [j2]Mehmet Ercan Nergiz, A. Ercüment Çiçek, Thomas Pedersen, Yücel Saygin:
A Look-Ahead Approach to Secure Multiparty Protocols. IEEE Trans. Knowl. Data Eng. 24(7): 1170-1185 (2012) - 2011
- [j1]Ali Cakmak, Xinjian Qi, Sarp A. Coskun, Mitali Das, En Cheng, A. Ercüment Çiçek, Nicola Lai, Gultekin Özsoyoglu, Z. Meral Özsoyoglu:
PathCase-SB architecture and database design. BMC Syst. Biol. 5: 188 (2011)
Conference and Workshop Papers
- 2024
- [c7]Ege Erdogan, Unat Teksen, Mehmet Salih Celiktenyildiz, Alptekin Küpçü, A. Ercüment Çiçek:
SplitOut: Out-of-the-Box Training-Hijacking Detection in Split Learning via Outlier Detection. CANS (2) 2024: 118-142 - 2022
- [c6]Ege Erdogan, Alptekin Küpçü, A. Ercüment Çiçek:
UnSplit: Data-Oblivious Model Inversion, Model Stealing, and Label Inference Attacks against Split Learning. WPES@CCS 2022: 115-124 - [c5]Ege Erdogan, Alptekin Küpçü, A. Ercüment Çiçek:
SplitGuard: Detecting and Mitigating Training-Hijacking Attacks in Split Learning. WPES@CCS 2022: 125-137 - 2020
- [c4]Gizem Caylak, A. Ercüment Çiçek:
Potpourri: An Epistasis Test Prioritization Algorithm via Diverse SNP Selection. RECOMB 2020: 243-244 - 2013
- [c3]A. Ercüment Çiçek, Xinjian Qi, Ali Cakmak, Stephen R. Johnson, Xu Han, Sami Alshalwi, Gultekin Özsoyoglu:
PathCase-MAW: An Online Metabolic Network Analysis Workbench. BCB 2013: 219 - 2011
- [c2]Ali Cakmak, Xinjian Qi, A. Ercüment Çiçek, Gultekin Özsoyoglu:
Computational interpretation of metabolomics measurements: steady-state metabolic network dynamics analysis. BCB 2011: 387-392 - [c1]A. Ercüment Çiçek, Gultekin Özsoyoglu:
Resolving observation conflicts in steady state metabolic network dynamics analysis. BCB 2011: 409-414
Informal and Other Publications
- 2023
- [i8]Ege Erdogan, Unat Teksen, Mehmet Salih Celiktenyildiz, Alptekin Küpçü, A. Ercüment Çiçek:
Defense Mechanisms Against Training-Hijacking Attacks in Split Learning. CoRR abs/2302.08618 (2023) - 2021
- [i7]Ege Erdogan, Alptekin Küpçü, A. Ercüment Çiçek:
UnSplit: Data-Oblivious Model Inversion, Model Stealing, and Label Inference Attacks Against Split Learning. CoRR abs/2108.09033 (2021) - [i6]Ege Erdogan, Alptekin Küpçü, A. Ercüment Çiçek:
SplitGuard: Detecting and Mitigating Training-Hijacking Attacks in Split Learning. CoRR abs/2108.09052 (2021) - [i5]Ege Erdogan, Alptekin Küpçü, A. Ercüment Çiçek:
UnSplit: Data-Oblivious Model Inversion, Model Stealing, and Label Inference Attacks Against Split Learning. IACR Cryptol. ePrint Arch. 2021: 1074 (2021) - [i4]Ege Erdogan, Alptekin Küpçü, A. Ercüment Çiçek:
SplitGuard: Detecting and Mitigating Training-Hijacking Attacks in Split Learning. IACR Cryptol. ePrint Arch. 2021: 1080 (2021) - 2020
- [i3]Kerem Ayoz, Erman Ayday, A. Ercüment Çiçek:
Genome Reconstruction Attacks Against Genomic Data-Sharing Beacons. CoRR abs/2001.08852 (2020) - 2019
- [i2]Can Firtina, Jeremie S. Kim, Mohammed Alser, Damla Senol Cali, A. Ercüment Çiçek, Can Alkan, Onur Mutlu:
Apollo: A Sequencing-Technology-Independent, Scalable, and Accurate Assembly Polishing Algorithm. CoRR abs/1902.04341 (2019) - 2016
- [i1]Erin Avllazagaj, Erman Ayday, A. Ercüment Çiçek:
Privacy-Related Consequences of Turkish Citizen Database Leak. CoRR abs/1605.05847 (2016)
Coauthor Index
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last updated on 2024-11-07 21:34 CET by the dblp team
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