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ORCIDPratul K. Agarwal
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Journal Articles
- 2020
[j7]Pratul K. Agarwal
, Thomas J. Naughton, Byung H. Park, David E. Bernholdt, Joshua Hursey, Al Geist:
Application health monitoring for extreme-scale resiliency using cooperative fault management. Concurr. Comput. Pract. Exp. 32(2) (2020)- 2013
- [j6]Pratul K. Agarwal, Scott S. Hampton, Jeffrey D. Poznanovic, Arvind Ramanathan, Sadaf R. Alam, Paul S. Crozier:
Performance modeling of microsecond scale biological molecular dynamics simulations on heterogeneous architectures. Concurr. Comput. Pract. Exp. 25(10): 1356-1375 (2013) - 2011
- [j5]Andrej J. Savol, Virginia M. Burger, Pratul K. Agarwal, Arvind Ramanathan, Chakra S. Chennubhotla:
QAARM: quasi-anharmonic autoregressive model reveals molecular recognition pathways in ubiquitin. Bioinform. 27(13): 52-60 (2011) - 2010
- [j4]Arvind Ramanathan, Pratul K. Agarwal, Maria G. Kurnikova, Christopher James Langmead:
An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations. J. Comput. Biol. 17(3): 309-324 (2010) - 2008
- [j3]Sadaf R. Alam, Pratul K. Agarwal, Jeffrey S. Vetter:
Performance characteristics of biomolecular simulations on high-end systems with multi-core processors. Parallel Comput. 34(11): 640-651 (2008) - 2007
- [j2]Sadaf R. Alam, Pratul K. Agarwal, Melissa C. Smith, Jeffrey S. Vetter, David Caliga:
Using FPGA Devices to Accelerate Biomolecular Simulations. Computer 40(3): 66-73 (2007) - [j1]Sadaf R. Alam, Pratul K. Agarwal, Jeffrey S. Vetter, Melissa C. Smith:
Throughput Improvement of Molecular Dynamics Simulations Using Reconfigurable Computing. Scalable Comput. Pract. Exp. 8(4) (2007)
Conference and Workshop Papers
- 2012
- [c11]Virginia M. Burger, Arvind Ramanathan, Andrej J. Savol, Christopher B. Stanley, Pratul K. Agarwal, Chakra S. Chennubhotla:
Quasi-Anharmonic Analysis Reveals Intermediate States in the Nuclear Co-Activator Receptor Binding Domain Ensemble. Pacific Symposium on Biocomputing 2012: 70-81 - 2011
- [c10]Byung H. Park, Thomas J. Naughton, Pratul K. Agarwal, David E. Bernholdt, Al Geist, Jennifer L. Tippens:
Realization of User Level Fault Tolerant Policy Management through a Holistic Approach for Fault Correlation. POLICY 2011: 17-24 - 2010
- [c9]Ananth Nallamuthu, Melissa C. Smith, Scott S. Hampton, Pratul K. Agarwal, Sadaf R. Alam:
Energy efficient biomolecular simulations with FPGA-based reconfigurable computing. Conf. Computing Frontiers 2010: 83-84 - [c8]Scott S. Hampton, Pratul K. Agarwal, Sadaf R. Alam, Paul S. Crozier:
Towards microsecond biological molecular dynamics simulations on hybrid processors. HPCS 2010: 98-107 - [c7]Scott S. Hampton, Sadaf R. Alam, Paul S. Crozier, Pratul K. Agarwal:
Optimal Utilization of Heterogeneous Resources for Biomolecular Simulations. SC 2010: 1-11 - 2009
- [c6]Arvind Ramanathan, Pratul K. Agarwal, Maria G. Kurnikova, Christopher James Langmead:
An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations. RECOMB 2009: 138-154 - 2008
- [c5]Sadaf R. Alam, Pratul K. Agarwal, Scott S. Hampton, Hong Ong:
Experimental Evaluation of Molecular Dynamics Simulations on Multi-core Systems. HiPC 2008: 131-141 - [c4]Sadaf R. Alam, Pratul K. Agarwal, Scott S. Hampton, Hong Ong, Jeffrey S. Vetter:
Impact of multicores on large-scale molecular dynamics simulations. IPDPS 2008: 1-7 - 2007
- [c3]Sadaf R. Alam, Pratul K. Agarwal, Jeffery A. Kuehn:
Performance Evaluation of a Scalable Molecular Dynamics Simulation Framework on a Massively-Parallel System. BIBE 2007: 1459-1466 - [c2]Sadaf R. Alam, Pratul K. Agarwal:
On the Path to Enable Multi-scale Biomolecular Simulations on PetaFLOPS Supercomputer with Multi-core Processors. IPDPS 2007: 1-8 - 2006
- [c1]Sadaf R. Alam, Jeffrey S. Vetter, Pratul K. Agarwal, Al Geist:
Performance characterization of molecular dynamics techniques for biomolecular simulations. PPoPP 2006: 59-68
Coauthor Index
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