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ORCIDThomas J. Naughton
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2020 – today
- 2024
[j20]Amir Shehata
, Thomas J. Naughton, David E. Bernholdt, Howard Pritchard:
Bringing HPE Slingshot 11 support to Open MPI. Concurr. Comput. Pract. Exp. 36(22) (2024)- [i4]Amir Shehata, Thomas J. Naughton, In-Saeng Suh:
A Framework for Integrating Quantum Simulation and High Performance Computing. CoRR abs/2408.08098 (2024) - 2023
- [c59]Taina Lehtimäki, Rosemary Monahan, Aidan Mooney, Kevin Casey, Thomas J. Naughton:
A Computational Thinking Obstacle Course Based on Bebras Tasks for K-12 Schools. ITiCSE (1) 2023: 478-484 - [c58]Taina Lehtimäki, Rosemary Monahan, Aidan Mooney, Kevin Casey, Thomas J. Naughton:
Computational Thinking Resources Inspired by Bebras. ITiCSE (2) 2023: 663 - 2022
- [c57]Taina Lehtimäki, Rosemary Monahan, Aidan Mooney, Kevin Casey, Thomas J. Naughton:
Bebras-inspired Computational Thinking Primary School Resources Co-created by Computer Science Academics and Teachers. ITiCSE (1) 2022: 207-213 - [c56]Mikhail Titov, Matteo Turilli, André Merzky, Thomas J. Naughton, Wael R. Elwasif, Shantenu Jha:
RADICAL-Pilot and PMIx/PRRTE: Executing Heterogeneous Workloads at Large Scale on Partitioned HPC Resources. JSSPP 2022: 88-107 - [c55]Wael R. Elwasif, Thomas J. Naughton, Matthew B. Baker:
Towards a Standard Process Management Infrastructure for Workflows Using Python. PDCAT 2022: 523-534 - [c54]Christian Engelmann, Olga A. Kuchar, Swen Boehm, Michael J. Brim, Thomas J. Naughton, Suhas Somnath, Scott Atchley, Jack Lange, Ben Mintz, Elke Arenholz:
The INTERSECT Open Federated Architecture for the Laboratory of the Future. SMC 2022: 173-190 - [c53]Neena Imam, Nageswara S. V. Rao, Anees Al-Najjar, Thomas J. Naughton, Seth Hitefield:
Emulation Framework for Distributed Large-Scale Systems Integration. SysCon 2022: 1-8 - [c52]Taina Lehtimäki, James Hamm, Aidan Mooney, Kevin Casey, Rosemary Monahan, Thomas J. Naughton:
A computational thinking module for secondary students and pre-service teachers using Bebras-style tasks. UKICER 2022: 19:1 - 2021
- [c51]Anees Al-Najjar, Nageswara S. V. Rao, Neena Imam, Thomas J. Naughton, Seth Hitefield, Lawrence Sorrillo, James Kohl, Wael R. Elwasif, Jean-Christophe Bilheux, Hassina Z. Bilheux, Swen Boehm, Jason Kincl:
Virtual Framework for Development and Testing of Federation Software Stack. LCN 2021: 323-326 - [i3]Anees Al-Najjar, Nageswara S. V. Rao, Neena Imam, Thomas J. Naughton, Seth Hitefield, Lawrence Sorrillo, James Kohl, Wael R. Elwasif, Jean-Christophe Bilheux, Hassina Z. Bilheux, Swen Boehm, Jason Kincl:
VFSIE - Development and Testing Framework for Federated Science Instruments. CoRR abs/2101.02184 (2021) - 2020
- [j19]Pratul K. Agarwal, Thomas J. Naughton, Byung H. Park, David E. Bernholdt, Joshua Hursey, Al Geist:
Application health monitoring for extreme-scale resiliency using cooperative fault management. Concurr. Comput. Pract. Exp. 32(2) (2020) - [j18]David E. Bernholdt, Swen Boehm, George Bosilca, Manjunath Gorentla Venkata, Ryan E. Grant, Thomas J. Naughton, Howard Pritchard, Martin Schulz, Geoffroy R. Vallée:
A survey of MPI usage in the US exascale computing project. Concurr. Comput. Pract. Exp. 32(3) (2020) - [c50]Thomas J. Naughton, Seth Hitefield, Lawrence Sorrillo, Nageswara S. V. Rao, James Kohl, Wael R. Elwasif, Jean-Christophe Bilheux, Hassina Z. Bilheux, Swen Boehm, Jason Kincl, Satyabrata Sen, Neena Imam:
Software Framework for Federated Science Instruments. SMC 2020: 189-203
2010 – 2019
- 2019
- [c49]Matteo Turilli, André Merzky, Thomas J. Naughton, Wael R. Elwasif, Shantenu Jha:
Characterizing the Performance of Executing Many-tasks on Summit. IPDRM@SC 2019: 18-25 - [i2]Matteo Turilli, André Merzky, Thomas J. Naughton, Wael R. Elwasif, Shantenu Jha:
Characterizing the Performance of Executing Many-tasks on Summit. CoRR abs/1909.03057 (2019) - 2018
- [j17]Amogh Katti, Giuseppe Di Fatta, Thomas J. Naughton, Christian Engelmann:
Epidemic failure detection and consensus for extreme parallelism. Int. J. High Perform. Comput. Appl. 32(5): 729-743 (2018) - [c48]Charlotte Kotas, Thomas J. Naughton, Neena Imam:
A comparison of Amazon Web Services and Microsoft Azure cloud platforms for high performance computing. ICCE 2018: 1-4 - [c47]Thomas J. Naughton, Ferrol Aderholdt, Matthew B. Baker, Swaroop Pophale, Manjunath Gorentla Venkata, Neena Imam:
Oak Ridge OpenSHMEM Benchmark Suite. OpenSHMEM 2018: 202-216 - 2017
- [j16]Yongkai Huo, Péter Tamás Kovács, Thomas J. Naughton, Lajos Hanzo:
Wireless Holographic Image Communications Relying on Unequal Error Protected Bitplanes. IEEE Trans. Veh. Technol. 66(8): 7136-7148 (2017) - [c46]Dylan Machovec, Sudeep Pasricha, Anthony A. Maciejewski, Howard Jay Siegel, Gregory A. Koenig, Michael Wright, Marcia Hilton, Rajendra Rambharos, Thomas J. Naughton, Neena Imam:
Preemptive Resource Management for Dynamically Arriving Tasks in an Oversubscribed Heterogeneous Computing System. IPDPS Workshops 2017: 54-64 - [c45]Thomas J. Naughton, Lawrence Sorrillo, Adam Simpson, Neena Imam:
Balancing Performance and Portability with Containers in HPC: An OpenSHMEM Example. OpenSHMEM 2017: 130-142 - [i1]Talha Qaiser, Abhik Mukherjee, Chaitanya Reddy Pb, Sai Dileep Munugoti, Vamsi Tallam, Tomi Pitkäaho, Taina Lehtimäki, Thomas J. Naughton, Matt Berseth, Aníbal Pedraza, Ramakrishnan Mukundan, Matthew Smith, Abhir Bhalerao, Erik Rodner, Marcel Simon, Joachim Denzler, Chao-Hui Huang, Gloria Bueno, David R. J. Snead, Ian O. Ellis, Mohammad Ilyas, Nasir M. Rajpoot:
Her2 Challenge Contest: A Detailed Assessment of Automated Her2 Scoring Algorithms in Whole Slide Images of Breast Cancer Tissues. CoRR abs/1705.08369 (2017) - 2016
- [j15]Christian Engelmann, Thomas J. Naughton:
A new deadlock resolution protocol and message matching algorithm for the extreme-scale simulator. Concurr. Comput. Pract. Exp. 28(12): 3369-3389 (2016) - [c44]Thomas J. Naughton, Christian Engelmann, Geoffroy Vallée, Ferrol Aderholdt, Stephen L. Scott:
A Cooperative Approach to Virtual Machine Based Fault Injection. Euro-Par Workshops 2016: 671-682 - [c43]Zachary W. Parchman, Geoffroy Vallée, Thomas J. Naughton, Christian Engelmann, David E. Bernholdt, Stephen L. Scott:
Adding Fault Tolerance to NPB Benchmarks Using ULFM. FTXS@HPDC 2016: 27-34 - 2015
- [c42]Amogh Katti, Giuseppe Di Fatta, Thomas J. Naughton, Christian Engelmann:
Scalable and Fault Tolerant Failure Detection and Consensus. EuroMPI 2015: 13:1-13:9 - [c41]Geoffroy Vallée, David E. Bernholdt, Swen Böhm, Thomas J. Naughton:
STCI: Scalable RunTime Component Infrastructure. EuroMPI 2015: 17:1-17:2 - 2014
- [b1]Thomas J. Naughton:
Towards a resilience investigation framework for high performance computing. University of Reading, Berkshire, UK, 2014 - [c40]Ferrol Aderholdt, Fang Han, Stephen L. Scott, Thomas J. Naughton:
Efficient Checkpointing of Virtual Machines Using Virtual Machine Introspection. CCGRID 2014: 414-423 - [c39]Christian Engelmann, Thomas J. Naughton:
Improving the Performance of the Extreme-Scale Simulator. DS-RT 2014: 198-207 - [c38]Thomas J. Naughton, Garry Smith, Christian Engelmann, Geoffroy Vallée, Ferrol Aderholdt, Stephen L. Scott:
What Is the Right Balance for Performance and Isolation with Virtualization in HPC? Euro-Par Workshops (1) 2014: 570-581 - [c37]Thomas J. Naughton, Christian Engelmann, Geoffroy Vallée, Swen Böhm:
Supporting the Development of Resilient Message Passing Applications Using Simulation. PDP 2014: 271-278 - 2013
- [c36]Thomas J. Naughton, Swen Böhm, Christian Engelmann, Geoffroy Vallée:
Using Performance Tools to Support Experiments in HPC Resilience. Euro-Par Workshops 2013: 727-736 - [c35]Geoffroy Vallée, Thomas J. Naughton, Swen Böhm, Christian Engelmann:
A Runtime Environment for Supporting Research in Resilient HPC System Software & Tools. CANDAR 2013: 213-219 - [c34]Christian Engelmann, Thomas J. Naughton:
Toward a Performance/Resilience Tool for Hardware/Software Co-design of High-Performance Computing Systems. ICPP 2013: 960-969 - 2012
- [j14]Jérôme Gallard, Adrien Lebre, Christine Morin, Thomas J. Naughton, Stephen L. Scott, Geoffroy Vallée:
Architecture for the next generation system management tools. Future Gener. Comput. Syst. 28(1): 136-146 (2012) - [c33]Susan Stepney, Samson Abramsky, Matthias Bechmann, Jerzy Gorecki, Viv Kendon, Thomas J. Naughton, Mario J. Pérez-Jiménez, Francisco José Romero-Campero, Angelika Sebald:
Heterotic Computing Examples with Optics, Bacteria, and Chemicals. UCNC 2012: 198-209 - 2011
- [c32]Stephen L. Scott, Geoffroy Vallée, Thomas J. Naughton:
5th Workshop on System-Level Virtualization for High Performance Computing (HPCVirt 2011). Euro-Par Workshops (1) 2011: 211 - [c31]Thomas J. Naughton, Geoffroy Vallée, Christian Engelmann, Stephen L. Scott:
A Case for Virtual Machine Based Fault Injection in a High-Performance Computing Environment. Euro-Par Workshops (1) 2011: 234-243 - [c30]Byung H. Park, Thomas J. Naughton, Pratul K. Agarwal, David E. Bernholdt, Al Geist, Jennifer L. Tippens:
Realization of User Level Fault Tolerant Policy Management through a Holistic Approach for Fault Correlation. POLICY 2011: 17-24 - [c29]Joshua Hursey, Thomas J. Naughton, Geoffroy Vallée, Richard L. Graham:
A Log-Scaling Fault Tolerant Agreement Algorithm for a Fault Tolerant MPI. EuroMPI 2011: 255-263 - 2010
- [j13]Stephen L. Scott, Geoffroy Vallée, Thomas J. Naughton, Anand Tikotekar, Christian Engelmann, Hong Ong:
System-level virtualization research at Oak Ridge National Laboratory. Future Gener. Comput. Syst. 26(3): 304-307 (2010) - [j12]Andrew J. Page, Thomas M. Keane, Thomas J. Naughton:
Multi-heuristic dynamic task allocation using genetic algorithms in a heterogeneous distributed system. J. Parallel Distributed Comput. 70(7): 758-766 (2010) - [c28]Thomas J. Naughton, Geoffroy Vallée, Stephen L. Scott, Ferrol Aderholdt:
Loadable Hypervisor Modules. HICSS 2010: 1-8 - [e1]Douglas J. K. Mewhort, Natalie M. Cann, Gary W. Slater, Thomas J. Naughton:
High Performance Computing Systems and Applications, 23rd International Symposium, HPCS 2009, Kingston, ON, Canada, June 14-17, 2009, Revised Selected Papers. Lecture Notes in Computer Science 5976, Springer 2010, ISBN 978-3-642-12658-1 [contents]
2000 – 2009
- 2009
- [j11]Damien Woods, Thomas J. Naughton:
Optical computing. Appl. Math. Comput. 215(4): 1417-1430 (2009) - [c27]Anand Tikotekar, Hong Ong, Sadaf R. Alam, Geoffroy Vallée, Thomas J. Naughton, Christian Engelmann, Stephen L. Scott:
Performance comparison of two virtual machine scenarios using an HPC application: a case study using molecular dynamics simulations. HPCVirt@EuroSys 2009: 33-40 - [c26]Christian Engelmann, Geoffroy Vallée, Thomas J. Naughton, Stephen L. Scott:
Proactive Fault Tolerance Using Preemptive Migration. PDP 2009: 252-257 - [c25]Stephen L. Scott, Christian Engelmann, Geoffroy Vallée, Thomas J. Naughton, Anand Tikotekar, George Ostrouchov, Chokchai Leangsuksun, Nichamon Naksinehaboon, Raja Nassar, Mihaela Paun, Frank Mueller, Chao Wang, Arun Babu Nagarajan, Jyothish Varma:
A tunable holistic resiliency approach for high-performance computing systems. PPoPP 2009: 305-306 - [r1]Thomas J. Naughton, Damien Woods:
Optical Computing. Encyclopedia of Complexity and Systems Science 2009: 6388-6407 - 2008
- [j10]Niall Murphy, Thomas J. Naughton, Damien Woods, Beverley Henley, Kieran McDermott, Elaine Duffy, Peter J. M. Van Der Burgt, Niamh Woods:
Implementations of a Model of Physical Sorting. Int. J. Unconv. Comput. 4(1): 3-12 (2008) - [j9]Andrew J. Page, Thomas M. Keane, Thomas J. Naughton:
Scheduling in a dynamic heterogeneous distributed system using estimation error. J. Parallel Distributed Comput. 68(11): 1452-1462 (2008) - [c24]Geoffroy Vallée, Kulathep Charoenpornwattana, Christian Engelmann, Anand Tikotekar, Chokchai Leangsuksun, Thomas J. Naughton, Stephen L. Scott:
A Framework for Proactive Fault Tolerance. ARES 2008: 659-664 - [c23]Anand Tikotekar, Geoffroy Vallée, Thomas J. Naughton, Hong Ong, Christian Engelmann, Stephen L. Scott:
An Analysis of HPC Benchmarks in Virtual Machine Environments. Euro-Par Workshops 2008: 63-71 - [c22]Anand Tikotekar, Geoffroy Vallée, Thomas J. Naughton, Hong Ong, Christian Engelmann, Stephen L. Scott, Anthony M. Filippi:
Effects of virtualization on a scientific application running a hyperspectral radiative transfer code on virtual machines. HPCVirt@EuroSys 2008: 16-23 - [c21]Geoffroy Vallée, Thomas J. Naughton, Stephen L. Scott:
Proposal for Modifications to the OSCAR Architecture to Address Challenges in Distributed System Management. HPCS 2008: 40-46 - [c20]Damien Woods, Thomas J. Naughton:
Parallel and Sequential Optical Computing. OSC 2008: 70-86 - [c19]Geoffroy Vallée, Thomas J. Naughton, Christian Engelmann, Hong Ong, Stephen L. Scott:
System-Level Virtualization for High Performance Computing. PDP 2008: 636-643 - [c18]Geoffroy Vallée, Thomas J. Naughton, Hong Ong, Anand Tikotekar, Christian Engelmann, Wesley Bland, Ferrol Aderholdt, Stephen L. Scott:
Virtual System Environments. SVM 2008: 72-83 - 2007
- [j8]Thomas M. Keane, Thomas J. Naughton, James O. McInerney:
MultiPhyl: a high-throughput phylogenomics webserver using distributed computing. Nucleic Acids Res. 35(Web-Server-Issue): 33-37 (2007) - [j7]Alison E. Shortt, Thomas J. Naughton, Bahram Javidi:
Histogram Approaches for Lossy Compression of Digital Holograms of Three-Dimensional Objects. IEEE Trans. Image Process. 16(6): 1548-1556 (2007) - [c17]Geoffroy Vallée, Thomas J. Naughton, Stephen L. Scott:
System management software for virtual environments. Conf. Computing Frontiers 2007: 153-160 - [c16]Anand Tikotekar, Geoffroy Vallée, Thomas J. Naughton, Stephen L. Scott, Chokchai Leangsuksun:
Evaluation of fault-tolerant policies using simulation. CLUSTER 2007: 303-311 - [c15]Wesley Bland, Thomas J. Naughton, Geoffroy Vallée, Stephen L. Scott:
Design and Implementation of a Menu Based OSCAR Command Line Interface. HPCS 2007: 25 - [c14]Geoffroy Vallée, Thomas J. Naughton, Wesley Bland, Stephen L. Scott:
Automatic Testing Tool for OSCAR Using System-level Virtualization. HPCS 2007: 26 - 2006
- [j6]Thomas M. Keane, Andrew J. Page, Thomas J. Naughton, Simon A. A. Travers, James O. McInerney:
Building Large Phylogenetic Trees on Coarse-Grained Parallel Machines. Algorithmica 45(3): 285-300 (2006) - [j5]Yann Frauel, Thomas J. Naughton, Osamu Matoba, Enrique Tajahuerce-Romera, Bahram Javidi:
Three-Dimensional Imaging and Processing Using Computational Holographic Imaging. Proc. IEEE 94(3): 636-653 (2006) - [c13]Geoffroy Vallée, Thomas J. Naughton, Stephen L. Scott, Jeffrey M. Squyres, Erich Focht:
A Component-Based Approach to Improving the Modularity of OSCAR. HPCS 2006: 42 - [c12]Andrew J. Page, Shirley Coyle, Thomas M. Keane, Thomas J. Naughton, Charles Markham, Tomás E. Ward:
Distributed Monte Carlo simulation of light transportation in tissue. IPDPS 2006 - [c11]Stephen L. Scott, Thomas J. Naughton, Geoffroy Vallée:
OSCAR - OSCAR community meeting. SC 2006: 6 - 2005
- [j4]Andrew J. Page, Thomas J. Naughton:
Framework for Task Scheduling in Heterogeneous Distributed Computing Using Genetic Algorithms. Artif. Intell. Rev. 24(3-4): 415-429 (2005) - [j3]Thomas M. Keane, Thomas J. Naughton, Simon A. A. Travers, James O. McInerney, Grace P. McCormack:
DPRml: distributed phylogeny reconstruction by maximum likelihood. Bioinform. 21(7): 969-974 (2005) - [j2]Thomas M. Keane, Thomas J. Naughton:
DSEARCH: sensitive database searching using distributed computing. Bioinform. 21(8): 1705-1706 (2005) - [j1]Damien Woods, Thomas J. Naughton:
An optical model of computation. Theor. Comput. Sci. 334(1-3): 227-258 (2005) - [c10]Thomas M. Keane, Andrew J. Page, James O. McInerney, Thomas J. Naughton:
A High-Throughput Bioinformatics Distributed Computing Platform. CBMS 2005: 377-382 - [c9]John Mugler, Thomas J. Naughton, Stephen L. Scott:
OSCAR Meta-Package System. HPCS 2005: 353-360 - [c8]Andrew J. Page, Thomas M. Keane, Thomas J. Naughton:
Bioinformatics on a Heterogeneous Java Distributed System. IPDPS 2005 - [c7]Andrew J. Page, Thomas J. Naughton:
Dynamic Task Scheduling using Genetic Algorithms for Heterogeneous Distributed Computing. IPDPS 2005 - 2004
- [c6]Andrew J. Page, Thomas M. Keane, Thomas J. Naughton:
Adaptive Scheduling across a Distributed Computation Platform. ISPDC/HeteroPar 2004: 141-148 - 2003
- [c5]Andrew J. Page, Thomas M. Keane, Richard Allen, Thomas J. Naughton, John Waldron:
Multi-tiered distributed computing platform. PPPJ 2003: 191-194 - 2002
- [c4]Thomas M. Keane, Richard Allen, Thomas J. Naughton, James O. McInerney, John Waldron:
Distributed Java Platform with Programmable MIMD Capabilities. FIDJI 2002: 122-131 - [c3]Aidan J. Delaney, Thomas J. Naughton:
Emulation of an unconventional model of computation in Java. PPPJ/IRE 2002: 1-6 - [c2]Thomas M. Keane, Richard Allen, Thomas J. Naughton, James O. McInerney, John Waldron:
Distributed computing for DNA analysis. PPPJ/IRE 2002: 65-70 - 2001
- [c1]Thomas J. Naughton, Damien Woods:
On the Computational Power of a Continuous-Space Optical Model of Computation. MCU 2001: 288-299
Coauthor Index
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