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ORCIDIrina Balaur
Person information
- affiliation: University of Luxembourg
- affiliation (former): University of Lyon, France
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Journal Articles
- 2023
[j12]Adrien Rougny
, Irina Balaur, Augustin Luna, Alexander Mazein:
StonPy: a tool to parse and query collections of SBGN maps in a graph database. Bioinform. 39(3) (2023)- [j11]Alexander Mazein, Marcio Luis Acencio, Irina Balaur, Adrien Rougny, Danielle Welter, Anna Niarakis, Diana Ramirez Ardila, Ugur Dogrusoz, Piotr Gawron, Venkata P. Satagopam, Wei Gu, Andreas Kremer, Reinhard Schneider, Marek Ostaszewski:
A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance. Frontiers Bioinform. 3 (2023) - 2022
- [j10]Irina Balaur, Ludovic Roy, Vasundra Touré, Alexander Mazein, Charles Auffray:
GraphML-SBGN bidirectional converter for metabolic networks. J. Integr. Bioinform. 19(4) (2022) - 2020
- [j9]Martin Siebenhaller, Sune S. Nielsen, Fintan McGee, Irina Balaur, Charles Auffray, Alexander Mazein:
Human-like layout algorithms for signalling hypergraphs: outlining requirements. Briefings Bioinform. 21(1): 62-72 (2020) - [j8]Irina Balaur, Ludovic Roy, Alexander Mazein, S. Gökberk Karaca, Ugur Dogrusoz, Emmanuel Barillot, Andrei Yu. Zinovyev:
cd2sbgnml: bidirectional conversion between CellDesigner and SBGN formats. Bioinform. 36(8): 2620-2622 (2020) - [j7]Irina Balaur, Ludovic Roy, Alexander Mazein, S. Gökberk Karaca, Ugur Dogrusoz, Emmanuel Barillot, Andrei Yu. Zinovyev:
cd2sbgnml: bidirectional conversion between CellDesigner and SBGN formats. Bioinform. 36(19): 4975 (2020) - 2019
- [j6]Adrien Rougny, Vasundra Touré, Stuart L. Moodie, Irina Balaur, Tobias Czauderna, Hanna Borlinghaus, Ugur Dogrusoz, Alexander Mazein, Andreas Dräger, Michael L. Blinov, Alice Villéger, Robin Haw, Emek Demir, Huaiyu Mi, Anatoly A. Sorokin, Falk Schreiber, Augustin Luna:
Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0. J. Integr. Bioinform. 16(2) (2019) - 2018
- [j5]Bertrand De Meulder, Diane Lefaudeux, Aruna T. Bansal, Alexander Mazein, Amphun Chaiboonchoe, Hassan Ahmed, Irina Balaur, Mansoor A. S. Saqi, Johann Pellet, Stéphane Ballereau, Nathanaël Lemonnier, Kai Sun, Ioannis Pandis, Xian Yang, Manohara Batuwitage, Kosmas Kretsos, Jonathan van Eyll, Alun Bedding, Timothy Davison, Paul Dodson, Christopher Larminie, Anthony D. Postle, Julie Corfield, Ratko Djukanovic, Kian Fan Chung, Ian M. Adcock, Yike Guo, Peter J. Sterk, Alexander Manta, Anthony Rowe, Frédéric Baribaud, Charles Auffray:
A computational framework for complex disease stratification from multiple large-scale datasets. BMC Syst. Biol. 12(1): 60:1-60:23 (2018) - 2017
- [j4]Irina Balaur, Alexander Mazein, Mansoor A. S. Saqi, Artem Lysenko, Christopher J. Rawlings:
Recon2Neo4j: applying graph database technologies for managing comprehensive genome-scale networks. Bioinform. 33(7): 1096-1098 (2017) - [j3]Irina Balaur, Mansoor A. S. Saqi, Ana Barat, Artem Lysenko, Alexander Mazein, Christopher J. Rawlings, Heather J. Ruskin, Charles Auffray:
EpiGeNet: A Graph Database of Interdependencies Between Genetic and Epigenetic Events in Colorectal Cancer. J. Comput. Biol. 24(10): 969-980 (2017) - 2016
- [j2]Artem Lysenko, Irina A. Roznovat, Mansoor A. S. Saqi, Alexander Mazein, Christopher J. Rawlings, Charles Auffray:
Representing and querying disease networks using graph databases. BioData Min. 9: 23 (2016) - [j1]Vasundra Touré, Alexander Mazein, Dagmar Waltemath, Irina Balaur, Mansoor A. S. Saqi, Ron Henkel, Johann Pellet, Charles Auffray:
STON: exploring biological pathways using the SBGN standard and graph databases. BMC Bioinform. 17: 494:1-494:9 (2016)
Conference and Workshop Papers
- 2023
- [c6]Dagmar Waltemath, Esther Thea Inau, Lea Michaelis, Venkata P. Satagopam, Irina Balaur:
Experiences From FAIRifying Community Data and FAIR Infrastructure in Biomedical Research Domains. CoRDI 2023 - 2014
- [c5]Irina A. Roznovat, Heather J. Ruskin:
LogisticCrypt - A logistic model of intestinal crypt structure. BIBM 2014: 14-21 - [c4]Irina A. Roznovat, Heather J. Ruskin:
A computational analysis on methylation inhibition during intestinal cancer initiation. BIBM 2014: 22-29 - [c3]Heather J. Ruskin, Dimitri Perrin, Irina A. Roznovat:
Building cross-scale models of epigenetic mechanisms. BIBM 2014: 30-37 - 2013
- [c2]Irina A. Roznovat, Heather J. Ruskin:
Methylation Inhibitors and Carcinogens in an Agent-Based Model for Colon Crypt Dynamics during Cancer Development. EMS 2013: 152-157 - 2012
- [c1]Irina A. Roznovat, Heather J. Ruskin:
A computational model for genetic and epigenetic signals in colon cancer. BIBM Workshops 2012: 188-195
Informal and Other Publications
- 2013
- [i1]Irina-Afrodita Roznovat, Heather J. Ruskin:
Interdependencies of Genetic and Epigenetic Events in a Computational Model for Colon Cancer Dynamics. ERCIM News 2013(95) (2013)
Coauthor Index
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