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2020 – today
- 2024
[j22]Lilu Guo
, Hongwei Huo:
An efficient Burrows-Wheeler transform-based aligner for short read mapping. Comput. Biol. Chem. 110: 108050 (2024)- 2023
- [j21]Hongwei Huo, Peng Long, Jeffrey Scott Vitter:
Practical High-Order Entropy-Compressed Text Self-Indexing. IEEE Trans. Knowl. Data Eng. 35(3): 2943-2960 (2023) - [j20]Zhen Lv, Kaiyu Shang, Hongwei Huo, Ximeng Liu, Yanguo Peng, Xiangyu Wang, Yaorong Tan:
RASK: Range Spatial Keyword Queries on Massive Encrypted Geo-Textual Data. IEEE Trans. Serv. Comput. 16(5): 3621-3635 (2023) - 2022
- [j19]Hongwei Huo, Pengfei Liu, Chenhui Wang, Hongbo Jiang, Jeffrey Scott Vitter:
CIndex: compressed indexes for fast retrieval of FASTQ files. Bioinform. 38(2): 335-343 (2022) - [j18]Zhize Li, Jian Li, Hongwei Huo:
Optimal in-place suffix sorting. Inf. Comput. 285(Part): 104818 (2022) - 2021
- [j17]Hongwei Huo, Xiaoyang Chen, Xu Guo, Jeffrey Scott Vitter:
Efficient Compression and Indexing for Highly Repetitive DNA Sequence Collections. IEEE ACM Trans. Comput. Biol. Bioinform. 18(6): 2394-2408 (2021) - [j16]Xiaoyang Chen, Hongwei Huo, Jun Huan, Jeffrey Scott Vitter, Weiguo Zheng, Lei Zou:
MSQ-Index: A Succinct Index for Fast Graph Similarity Search. IEEE Trans. Knowl. Data Eng. 33(6): 2654-2668 (2021) - 2020
- [j15]Zhigang Sun, Hongwei Huo, Jun Huan, Jeffrey Scott Vitter:
Feature reduction based on semantic similarity for graph classification. Neurocomputing 397: 114-126 (2020)
2010 – 2019
- 2019
- [j14]Qiang Yu, Xiang Zhao, Hongwei Huo:
A new algorithm for DNA motif discovery using multiple sample sequence sets. J. Bioinform. Comput. Biol. 17(4): 1950021:1-1950021:19 (2019) - [j13]Xiaoyang Chen, Hongwei Huo, Jun Huan, Jeffrey Scott Vitter:
An efficient algorithm for graph edit distance computation. Knowl. Based Syst. 163: 762-775 (2019) - 2018
- [j12]Zhigang Sun, Hongwei Huo, Xiaoyang Chen:
Fast Top-K Graph Similarity Search Via Representative Matrices. IEEE Access 6: 21408-21417 (2018) - [j11]Qiang Yu, Dingbang Wei, Hongwei Huo:
SamSelect: a sample sequence selection algorithm for quorum planted motif search on large DNA datasets. BMC Bioinform. 19(1): 228:1-228:16 (2018) - [c24]Hongwei Huo, Xiaoyang Chen, Yuhao Zhao, Xiaojin Zhu, Jeffrey Scott Vitter:
Practical Succinct Text Indexes in External Memory. DCC 2018: 217-226 - [c23]Zhize Li, Jian Li, Hongwei Huo:
Optimal In-Place Suffix Sorting. DCC 2018: 422 - [c22]Zhize Li, Jian Li, Hongwei Huo:
Optimal In-Place Suffix Sorting. SPIRE 2018: 268-284 - 2017
- [j10]Xiaoyang Chen, Hongwei Huo, Jun Huan, Jeffrey Scott Vitter:
Efficient Graph Similarity Search in External Memory. IEEE Access 5: 4551-4560 (2017) - [i3]Xiaoyang Chen, Hongwei Huo, Jun Huan, Jeffrey Scott Vitter:
Fast Computation of Graph Edit Distance. CoRR abs/1709.10305 (2017) - 2016
- [j9]Qiang Yu, Hongwei Huo, Ruixing Zhao, Dazheng Feng, Jeffrey Scott Vitter, Jun Huan:
RefSelect: a reference sequence selection algorithm for planted (l, d) motif search. BMC Bioinform. 17(S-9): 266 (2016) - [c21]Hongwei Huo, Zhigang Sun, Shuangjiang Li, Jeffrey Scott Vitter, Xinkun Wang, Qiang Yu, Jun Huan:
CS2A: A Compressed Suffix Array-Based Method for Short Read Alignment. DCC 2016: 271-278 - [i2]Zhize Li, Jian Li, Hongwei Huo:
Optimal In-Place Suffix Sorting. CoRR abs/1610.08305 (2016) - [i1]Xiaoyang Chen, Hongwei Huo, Jun Huan, Jeffrey Scott Vitter:
MSQ-Index: A Succinct Index for Fast Graph Similarity Search. CoRR abs/1612.09155 (2016) - 2015
- [j8]Jiying Huang, Zhangdui Zhong, Hongwei Huo:
A dynamic energy-saving strategy for green cellular railway communication network. EURASIP J. Wirel. Commun. Netw. 2015: 89 (2015) - [j7]Qiang Yu, Hongwei Huo, Jeffrey Scott Vitter, Jun Huan, Yakov Nekrich:
An Efficient Exact Algorithm for the Motif Stem Search Problem over Large Alphabets. IEEE ACM Trans. Comput. Biol. Bioinform. 12(2): 384-397 (2015) - [c20]Hongwei Huo, Longgang Chen, Heng Zhao, Jeffrey Scott Vitter, Yakov Nekrich, Qiang Yu:
A Data-Aware FM-index. ALENEX 2015: 10-23 - [c19]Qiang Yu, Hongwei Huo, Ruixing Zhao, Dazheng Feng, Jeffrey Scott Vitter, Jun Huan:
Reference sequence selection for motif searches. BIBM 2015: 569-574 - 2014
- [c18]Qiang Yu, Hongwei Huo, Xiaoyang Chen, Haitao Guo, Jeffrey Scott Vitter, Jun Huan:
An efficient motif finding algorithm for large DNA data sets. BIBM 2014: 397-402 - [c17]Hongwei Huo, Longgang Chen, Jeffrey Scott Vitter, Yakov Nekrich:
A Practical Implementation of Compressed Suffix Arrays with Applications to Self-Indexing. DCC 2014: 292-301 - 2013
- [j6]Yipu Zhang, Hongwei Huo, Qiang Yu:
A Heuristic Cluster-Based EM Algorithm for the Planted (L, d) Problem. J. Bioinform. Comput. Biol. 11(4) (2013) - [c16]Qiang Yu, Hongwei Huo, Jeffrey Scott Vitter, Jun Huan, Yakov Nekrich:
StemFinder: An efficient algorithm for searching motif stems over large alphabets. BIBM 2013: 473-476 - 2012
- [c15]Cuimei Wu, Hairong Yan, Hongwei Huo:
A multi-channel MAC protocol design based on IEEE 802.15.4 standard in industry. INDIN 2012: 1206-1211 - [c14]Hongwei Huo, Shuai Lin, Qiang Yu, Yipu Zhang, Vojislav Stojkovic:
A MapReduce-based Algorithm for Motif Search. IPDPS Workshops 2012: 2052-2060 - 2011
- [j5]Hongwei Huo, Youzhi Xu, Hongke Zhang, Yu Hsiu Chuang, Tzong-Chen Wu:
Wireless-Sensor-Networks-based healthcare system: a survey on the view of communication paradigms. Int. J. Ad Hoc Ubiquitous Comput. 8(3): 135-154 (2011) - 2010
- [j4]Hongwei Huo, Vojislav Stojkovic, Qiao-Luan Xie:
A Quantum-Inspired Genetic Algorithm Based on Probabilistic Coding for Multiple Sequence Alignment. J. Bioinform. Comput. Biol. 8(1): 59-75 (2010) - [j3]Hongwei Huo, Zhenhua Zhao, Vojislav Stojkovic, Lifang Liu:
Optimizing genetic algorithm for motif discovery. Math. Comput. Model. 52(11-12): 2011-2020 (2010) - [j2]Hairong Yan, Hongwei Huo, Youzhi Xu, Mikael Gidlund:
Wireless sensor network based E-health system ?? implementation and experimental results. IEEE Trans. Consumer Electron. 56(4): 2288-2295 (2010)
2000 – 2009
- 2009
- [j1]Hongwei Huo, Xiaowu Wang, Vojislav Stojkovic:
Repeats identification using improved suffix trees. Int. J. Comput. Biol. Drug Des. 2(3): 264-277 (2009) - [c13]Hongwei Huo, Xiaowu Wang, Vojislav Stojkovic:
An Adaptive Suffix Tree Based Algorithm for Repeats Recognition in a DNA Sequence. IJCBS 2009: 181-184 - 2008
- [c12]Lifang Liu, Licheng Jiao, Hongwei Huo:
A Greedy Two-stage Gibbs Sampling Method for Motif Discovery in Biological Sequences. BMEI (1) 2008: 13-17 - 2007
- [c11]Hongwei Huo, Vojislav Stojkovic:
A Suffix Tree Construction Algorithm for DNA Sequences. BIBE 2007: 1178-1182 - [c10]Hongwei Huo, Vojislav Stojkovic:
A simulated annealing algorithm for multiple sequence alignment with guaranteed accuracy. ICNC (2) 2007: 270-274 - [c9]Hongwei Huo, Deyun Gao, Yanchao Niu, Shuai Gao:
ASDP: An Action-Based Service Discovery Protocol Using Ant Colony Algorithm in Wireless Sensor Networks. MSN 2007: 338-349 - [c8]Shuai Gao, Yanchao Niu, Hongwei Huo, Hongke Zhang:
An Energy Efficient Communication Protocol Based on Data Equilibrium in Mobile Wireless Sensor Network. MSN 2007: 433-444 - [c7]Yanchao Niu, Sidong Zhang, Xiaoyu Xu, Hongwei Huo, Shuai Gao:
An Enhanced DV-hop Localization Algorithm for Irregularly Shaped Sensor Networks. MSN 2007: 694-704 - 2006
- [c6]Hongwei Huo, Vojislav Stojkovic:
Two-Phase Quantum Based Evolutionary Algorithm for Multiple Sequence Alignment. CIS 2006: 11-21 - [c5]Vojislav Stojkovic, Hongwei Huo:
Software Agents Action Securities. CIS 2006: 714-724 - [c4]Hongwei Huo, Vojislav Stojkovic, Zhiwei Xiao:
A Maximum Weighted Path Approach to Multiple Alignments for DNA Sequences. ICNC (2) 2006: 336-339 - 2005
- [c3]Lifang Liu, Hongwei Huo, Bao-Shu Wang:
HGA-COFFEE : Aligning Multiple Sequences by Hybrid Genetic Algorithm. ADMA 2005: 464-473 - [c2]Hongwei Huo, Hua Ming:
Simulated Annealing with Injecting Star-Alignment for Multiple Sequence Alignments. CIS (1) 2005: 821-826 - [c1]Lifang Liu, Hongwei Huo, Bao-Shu Wang:
A Novel Optimization of Profile HMM by a Hybrid Genetic Algorithm. IWANN 2005: 734-741
Coauthor Index
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