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Ben M. Webb
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2020 – today
- 2023
- [j10]Stephen K. Burley
, Charmi Bhikadiya
, Chunxiao Bi, Sebastian Bittrich
, Henry Chao, Li Chen, Paul A. Craig
, Gregg V. Crichlow
, Kenneth Dalenberg, Jose M. Duarte
, Shuchismita Dutta, Maryam Fayazi
, Zukang Feng
, Justin W. Flatt
, Sai Ganesan, Sutapa Ghosh, David S. Goodsell, Rachel Kramer Green, Vladimir Guranovic
, Jeremy Henry, Brian P. Hudson
, Igor Khokhriakov, Catherine L. Lawson, Yuhe Liang
, Robert Lowe, Ezra Peisach
, Irina Persikova
, Dennis W. Piehl, Yana Rose
, Andrej Sali, Joan Segura
, Monica Sekharan
, Chenghua Shao
, Brinda Vallat, Maria Voigt
, Ben M. Webb, John D. Westbrook
, Shamara Whetstone, Jasmine Young
, Arthur O. Zalevsky
, Christine Zardecki
:
RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning. Nucleic Acids Res. 51(D1): 488-508 (2023)
2010 – 2019
- 2014
- [j9]Ursula Pieper
, Benjamin M. Webb, Guang Qiang Dong, Dina Schneidman-Duhovny, Hao Fan, Seung Joong Kim, Natalia Khuri, Yannick G. Spill
, Patrick Weinkam, Michal Hammel
, John A. Tainer
, Michael Nilges
, Andrej Sali:
ModBase, a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res. 42(Database-Issue): 336-346 (2014) - 2013
- [j8]Guang Qiang Dong, Hao Fan, Dina Schneidman-Duhovny, Ben M. Webb, Andrej Sali:
Optimized atomic statistical potentials: assessment of protein interfaces and loops. Bioinform. 29(24): 3158-3166 (2013) - 2012
- [j7]Hannes Braberg, Benjamin M. Webb, Elina Tjioe, Ursula Pieper
, Andrej Sali, Mallur S. Madhusudhan:
SALIGN: a web server for alignment of multiple protein sequences and structures. Bioinform. 28(15): 2072-2073 (2012) - 2011
- [j6]Ursula Pieper
, Benjamin M. Webb, David T. Barkan, Dina Schneidman-Duhovny, Avner Schlessinger, Hannes Braberg, Zheng Yang, Elaine C. Meng, Eric F. Pettersen, Conrad C. Huang, Ruchira S. Datta
, Parthasarathy Sampathkumar, Mallur S. Madhusudhan, Kimmen Sjölander, Thomas E. Ferrin, Stephen K. Burley
, Andrej Sali:
ModBase, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Res. 39(Database-Issue): 465-474 (2011) - [j5]Elina Tjioe, Keren Lasker, Ben M. Webb, Haim J. Wolfson, Andrej Sali:
MultiFit: a web server for fitting multiple protein structures into their electron microscopy density map. Nucleic Acids Res. 39(Web-Server-Issue): 167-170 (2011)
2000 – 2009
- 2009
- [j4]Hao Fan, John J. Irwin
, Benjamin M. Webb, Gerhard Klebe, Brian K. Shoichet, Andrej Sali:
Molecular Docking Screens Using Comparative Models of Proteins. J. Chem. Inf. Model. 49(11): 2512-2527 (2009) - [j3]Ursula Pieper
, Narayanan Eswar, Ben M. Webb, David Eramian, Libusha Kelly, David T. Barkan, Hannah Carter, Parminder Mankoo, Rachel Karchin
, Marc A. Martí-Renom
, Fred P. Davis, Andrej Sali:
MODBASE, a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res. 37(Database-Issue): 347-354 (2009) - 2006
- [j2]Ursula Pieper
, Narayanan Eswar, Fred P. Davis, Hannes Braberg, Mallur S. Madhusudhan, Andrea Rossi, Marc A. Martí-Renom
, Rachel Karchin
, Ben M. Webb, David Eramian, Min-Yi Shen, Libusha Kelly, Francisco Melo, Andrej Sali:
MODBASE: a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res. 34(Database-Issue): 291-295 (2006) - 2004
- [j1]Ursula Pieper
, Narayanan Eswar, Hannes Braberg, Mallur S. Madhusudhan, Fred P. Davis, Ashley C. Stuart, Nebojsa Mirkovic, Andrea Rossi, Marc A. Martí-Renom
, András Fiser, Ben M. Webb, Daniel M. Greenblatt, Conrad C. Huang, Thomas E. Ferrin, Andrej Sali:
MODBASE, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Res. 32(Database-Issue): 217-222 (2004)
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