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Yana Rose
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2020 – today
- 2023
- [j13]Joan Segura
, Yana Rose
, Chunxiao Bi, Jose M. Duarte, Stephen K. Burley, Sebastian Bittrich:
RCSB Protein Data Bank: visualizing groups of experimentally determined PDB structures alongside computed structure models of proteins. Frontiers Bioinform. 3 (2023) - [j12]Stephen K. Burley
, Charmi Bhikadiya
, Chunxiao Bi, Sebastian Bittrich
, Henry Chao, Li Chen, Paul A. Craig
, Gregg V. Crichlow
, Kenneth Dalenberg, Jose M. Duarte
, Shuchismita Dutta, Maryam Fayazi
, Zukang Feng
, Justin W. Flatt
, Sai Ganesan, Sutapa Ghosh, David S. Goodsell, Rachel Kramer Green, Vladimir Guranovic
, Jeremy Henry, Brian P. Hudson
, Igor Khokhriakov, Catherine L. Lawson, Yuhe Liang
, Robert Lowe, Ezra Peisach
, Irina Persikova
, Dennis W. Piehl, Yana Rose
, Andrej Sali, Joan Segura
, Monica Sekharan
, Chenghua Shao
, Brinda Vallat, Maria Voigt
, Ben M. Webb, John D. Westbrook
, Shamara Whetstone, Jasmine Young
, Arthur O. Zalevsky
, Christine Zardecki
:
RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning. Nucleic Acids Res. 51(D1): 488-508 (2023) - 2022
- [j11]Sebastian Bittrich
, Yana Rose
, Joan Segura
, Robert Lowe, John D. Westbrook
, Jose M. Duarte
, Stephen K. Burley:
RCSB Protein Data Bank: improved annotation, search and visualization of membrane protein structures archived in the PDB. Bioinform. 38(5): 1452-1454 (2022) - [j10]Joan Segura
, Yana Rose
, Sebastian Bittrich
, Stephen K. Burley, Jose M. Duarte
:
RCSB Protein Data Bank 1D3D module: displaying positional features on macromolecular assemblies. Bioinform. 38(12): 3304-3305 (2022) - 2021
- [j9]Joan Segura
, Yana Rose
, John D. Westbrook, Stephen K. Burley, Jose M. Duarte:
RCSB Protein Data Bank 1D tools and services. Bioinform. 36(22-23): 5526-5527 (2021) - [j8]Stephen K. Burley
, Charmi Bhikadiya
, Chunxiao Bi, Sebastian Bittrich
, Li Chen, Gregg V. Crichlow
, Cole H. Christie, Kenneth Dalenberg, Luigi Di Costanzo, Jose M. Duarte
, Shuchismita Dutta
, Zukang Feng
, Sai Ganesan, David S. Goodsell
, Sutapa Ghosh, Rachel Kramer Green, Vladimir Guranovic
, Dmytro Guzenko, Brian P. Hudson
, Catherine L. Lawson, Yuhe Liang
, Robert Lowe
, Harry Namkoong, Ezra Peisach
, Irina Persikova
, Christopher Randle, Alexander S. Rose
, Yana Rose
, Andrej Sali, Joan Segura
, Monica Sekharan
, Chenghua Shao
, Yi-Ping Tao, Maria Voigt
, John D. Westbrook
, Jasmine Young
, Christine Zardecki
, Marina Zhuravleva:
RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences. Nucleic Acids Res. 49(Database-Issue): D437-D451 (2021)
2010 – 2019
- 2019
- [j7]Stephen K. Burley, Helen M. Berman
, Charmi Bhikadiya
, Chunxiao Bi, Li Chen, Luigi Di Costanzo
, Cole H. Christie, Kenneth Dalenberg, Jose M. Duarte, Shuchismita Dutta
, Zukang Feng, Sutapa Ghosh, David S. Goodsell, Rachel Kramer Green, Vladimir Guranovic
, Dmytro Guzenko, Brian P. Hudson
, Tara Kalro, Yuhe Liang, Robert Lowe, Harry Namkoong, Ezra Peisach, Irina Periskova, Andreas Prlic, Christopher Randle, Alexander S. Rose
, Peter W. Rose
, Raul Sala, Monica Sekharan, Chenghua Shao
, Lihua Tan, Yi-Ping Tao, Yana Valasatava
, Maria Voigt, John D. Westbrook, Jesse Woo, Huanwang Yang, Jasmine Young
, Marina Zhuravleva, Christine Zardecki
:
RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy. Nucleic Acids Res. 47(Database-Issue): D464-D474 (2019) - [j6]Aleix Lafita
, Spencer Bliven
, Andreas Prlic, Dmytro Guzenko, Peter W. Rose
, Anthony R. Bradley
, Paolo Pavan, Douglas Myers-Turnbull
, Yana Valasatava
, Michael L. Heuer
, Matt Larson
, Stephen K. Burley, Jose M. Duarte
:
BioJava 5: A community driven open-source bioinformatics library. PLoS Comput. Biol. 15(2) (2019) - 2018
- [j5]Alexander S. Rose
, Anthony R. Bradley, Yana Valasatava
, Jose M. Duarte, Andreas Prlic, Peter W. Rose
:
NGL viewer: web-based molecular graphics for large complexes. Bioinform. 34(21): 3755-3758 (2018) - 2017
- [j4]Peter W. Rose
, Andreas Prlic
, Ali Altunkaya, Chunxiao Bi, Anthony R. Bradley, Cole H. Christie, Luigi Di Costanzo
, Jose M. Duarte
, Shuchismita Dutta
, Zukang Feng, Rachel Kramer Green, David S. Goodsell, Brian P. Hudson
, Tara Kalro, Robert Lowe, Ezra Peisach
, Christopher Randle, Alexander S. Rose, Chenghua Shao
, Yi-Ping Tao, Yana Valasatava
, Maria Voigt, John D. Westbrook, Jesse Woo, Huanwang Yang, Jasmine Young
, Christine Zardecki
, Helen M. Berman
, Stephen K. Burley
:
The RCSB protein data bank: integrative view of protein, gene and 3D structural information. Nucleic Acids Res. 45(Database-Issue): D271-D281 (2017) - [j3]Anthony R. Bradley
, Alexander S. Rose
, Antonín Pavelka, Yana Valasatava
, Jose M. Duarte
, Andreas Prlic
, Peter W. Rose
:
MMTF - An efficient file format for the transmission, visualization, and analysis of macromolecular structures. PLoS Comput. Biol. 13(6) (2017) - 2016
- [j2]Yana Valasatava
, Antonio Rosato
, Lucia Banci
, Claudia Andreini
:
MetalPredator: a web server to predict iron-sulfur cluster binding proteomes. Bioinform. 32(18): 2850-2852 (2016) - [c1]Alexander S. Rose
, Anthony R. Bradley, Yana Valasatava
, Jose M. Duarte, Andreas Prlic
, Peter W. Rose
:
Web-based molecular graphics for large complexes. Web3D 2016: 185-186 - 2013
- [j1]Claudia Andreini
, Gabriele Cavallaro, Antonio Rosato
, Yana Valasatava
:
MetalS2: A Tool for the Structural Alignment of Minimal Functional Sites in Metal-Binding Proteins and Nucleic Acids. J. Chem. Inf. Model. 53(11): 3064-3075 (2013)
Coauthor Index
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