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Dima Kozakov

Name: dblp XML data dump
Creator: Schloss Dagstuhl - Leibniz Center for Informatics
Published: 1993
License: https://creativecommons.org/publicdomain/zero/1.0/
Keywords: dblp, XML, computer science, scholarly publications, metadata

◀ ▶ joint publications with Dmitri Beglov

> Home > Persons > Dima Kozakov

Publications

2020
[j20]
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  dblp key:
  - journals/jcisd/WakefieldYBCKKW20
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  - https://dblp.org/rec/journals/jcisd/WakefieldYBCKKW20
Amanda E. Wakefield, Christine Yueh, Dmitri Beglov, Marcelo Santos Castilho, Dima Kozakov, György M. Keserü, Adrian Whitty, Sandor Vajda:
Benchmark Sets for Binding Hot Spot Identification in Fragment-Based Ligand Discovery. J. Chem. Inf. Model. 60(12): 6612-6623 (2020)
2018
[j18]
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  dblp key:
  - journals/jcamd/PadhornyHMMMABK18
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  - https://dblp.org/rec/journals/jcamd/PadhornyHMMMABK18
Dzmitry Padhorny, David R. Hall, Hanieh Mirzaei, Artem B. Mamonov, Mohammad Moghadasi, Andrey Alekseenko, Dmitri Beglov, Dima Kozakov:
Protein-ligand docking using FFT based sampling: D3R case study. J. Comput. Aided Mol. Des. 32(1): 225-230 (2018)
2017
[j17]
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  dblp key:
  - journals/bioinformatics/PorterXBBASK17
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  - https://dblp.org/rec/journals/bioinformatics/PorterXBBASK17
Kathryn A. Porter, Bing Xia, Dmitri Beglov, Tanggis Bohnuud, Nawsad Alam, Ora Schueler-Furman, Dima Kozakov:
ClusPro PeptiDock: efficient global docking of peptide recognition motifs using FFT. Bioinform. 33(20): 3299-3301 (2017)
2014
[j11]
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  - journals/jcisd/MottarellaBBNKV14
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  - https://dblp.org/rec/journals/jcisd/MottarellaBBNKV14
Scott E. Mottarella, Dmitri Beglov, Natalia Beglova, Matthew A. Nugent, Dima Kozakov, Sandor Vajda:
Docking Server for the Identification of Heparin Binding Sites on Proteins. J. Chem. Inf. Model. 54(7): 2068-2078 (2014)
2013
[j9]
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  - journals/bioinformatics/GroveHBVK13
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  - https://dblp.org/rec/journals/bioinformatics/GroveHBVK13
Laurie E. Grove, David R. Hall, Dmitri Beglov, Sandor Vajda, Dima Kozakov:
FTFlex: accounting for binding site flexibility to improve fragment-based identification of druggable hot spots. Bioinform. 29(9): 1218-1219 (2013)
[c4]
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  dblp key:
  - conf/cdc/MirzaeiVMBPVKV13
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  - https://dblp.org/rec/conf/cdc/MirzaeiVMBPVKV13
Hanieh Mirzaei, Elizabeth A. Villar, Scott E. Mottarella, Dmitri Beglov, Ioannis Ch. Paschalidis, Sandor Vajda, Dima Kozakov, Pirooz Vakili:
Flexible refinement of protein-ligand docking on manifolds. CDC 2013: 1392-1397
2012
[j7]
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  - journals/bioinformatics/BrenkeHCCBBSVK12
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  - https://dblp.org/rec/journals/bioinformatics/BrenkeHCCBBSVK12
Ryan Brenke, David R. Hall, Gwo-Yu Chuang, Stephen R. Comeau, Tanggis Bohnuud, Dmitri Beglov, Ora Schueler-Furman, Sandor Vajda, Dima Kozakov:
Application of asymmetric statistical potentials to antibody-protein docking. Bioinform. 28(20): 2608-2614 (2012)
[j4]
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  - journals/nar/NganBMBVHKV12
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  - https://dblp.org/rec/journals/nar/NganBMBVHKV12
Chi-Ho Ngan, Tanggis Bohnuud, Scott E. Mottarella, Dmitri Beglov, Elizabeth A. Villar, David R. Hall, Dima Kozakov, Sandor Vajda:
FTMAP: extended protein mapping with user-selected probe molecules. Nucleic Acids Res. 40(Web-Server-Issue): 271-275 (2012)
[c2]
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  - conf/cdc/MirzaeiKBPVV12
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Hanieh Mirzaei, Dima Kozakov, Dmitri Beglov, Ioannis Ch. Paschalidis, Sandor Vajda, Pirooz Vakili:
A new approach to rigid body minimization with application to molecular docking. CDC 2012: 2983-2988
2009
[j3]
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  - journals/bioinformatics/BrenkeKCBHLMV09
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Ryan Brenke, Dima Kozakov, Gwo-Yu Chuang, Dmitri Beglov, David R. Hall, Melissa R. Landon, Carla Mattos, Sandor Vajda:
Fragment-based identification of druggable 'hot spots' of proteins using Fourier domain correlation techniques. Bioinform. 25(5): 621-627 (2009)
[j2]
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  dblp key:
  - journals/jcamd/LandonLHJCOKBCBVPR09
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  - https://dblp.org/rec/journals/jcamd/LandonLHJCOKBCBVPR09
Melissa R. Landon, Raquel L. Lieberman, Quyen Q. Hoang, Shulin Ju, Jose M. M. Caaveiro, Susan D. Orwig, Dima Kozakov, Ryan Brenke, Gwo-Yu Chuang, Dmitri Beglov, Sandor Vajda, Gregory A. Petsko, Dagmar Ringe:
Detection of ligand binding hot spots on protein surfaces via fragment-based methods: application to DJ-1 and glucocerebrosidase. J. Comput. Aided Mol. Des. 23(8): 491-500 (2009)

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