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Publications
- 2015
[j37]Niya Wang, Ting Gong, Robert Clarke
, Lulu Chen, Ie-Ming Shih, Zhen Zhang, Douglas A. Levine, Jianhua Xuan, Yue Joseph Wang:
UNDO: a Bioconductor R package for unsupervised deconvolution of mixed gene expressions in tumor samples. Bioinform. 31(1): 137-139 (2015)- [j36]Ye Tian, Bai Zhang, Eric P. Hoffman, Robert Clarke, Zhen Zhang, Ie-Ming Shih, Jianhua Xuan, David M. Herrington, Yue Joseph Wang:
KDDN: an open-source Cytoscape app for constructing differential dependency networks with significant rewiring. Bioinform. 31(2): 287-289 (2015) - 2014
- [j32]Ye Tian, Bai Zhang, Eric P. Hoffman, Robert Clarke, Zhen Zhang, Ie-Ming Shih, Jianhua Xuan, David M. Herrington, Yue Joseph Wang:
Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks. BMC Syst. Biol. 8: 87 (2014) - 2012
- [c55]Li Chen, Jianhua Xuan, Jinghua Gu, Yue Wang, Zhen Zhang, Tian-Li Wang, Ie-Ming Shih:
Integrative Network Analysis to Identify Aberrant Pathway Networks in Ovarian Cancer. Pacific Symposium on Biocomputing 2012: 31-42 - 2009
- [j17]Bai Zhang, Huai Li, Rebecca B. Riggins, Ming Zhan, Jianhua Xuan, Zhen Zhang, Eric P. Hoffman, Robert Clarke, Yue Joseph Wang:
Differential dependency network analysis to identify condition-specific topological changes in biological networks. Bioinform. 25(4): 526-532 (2009) - [j15]Li Chen, Jianhua Xuan, Chen Wang, Yue Joseph Wang, Ie-Ming Shih, Tian-Li Wang, Zhen Zhang, Robert Clarke, Eric P. Hoffman:
Biomarker identification by knowledge-driven multilevel ICA and motif analysis. Int. J. Data Min. Bioinform. 3(4): 365-381 (2009) - 2008
- [j14]Li Chen, Jianhua Xuan, Chen Wang, Ie-Ming Shih, Yue Joseph Wang, Zhen Zhang, Eric P. Hoffman, Robert Clarke:
Knowledge-guided multi-scale independent component analysis for biomarker identification. BMC Bioinform. 9 (2008) - 2007
- [c30]Li Chen, Chen Wang, Ie-Ming Shih, Tian-Li Wang, Zhen Zhang, Yue Joseph Wang, Robert Clarke, Eric P. Hoffman, Jianhua Xuan:
Biomarker Identification by Knowledge-Driven Multi-Level ICA and Motif Analysis. ICMLA 2007: 560-566
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