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Journal Articles
- 2017
[j10]Keith A. Jolley
, James E. Bray, Martin C. J. Maiden:
A RESTful application programming interface for the PubMLST molecular typing and genome databases. Database J. Biol. Databases Curation 2017: bax060 (2017)- [j9]Connor Sharp, James E. Bray, Nicholas G. Housden, Martin C. J. Maiden, Colin Kleanthous:
Diversity and distribution of nuclease bacteriocins in bacterial genomes revealed using Hidden Markov Models. PLoS Comput. Biol. 13(7) (2017) - 2014
- [j8]Cátia Vaz, Alexandre P. Francisco, Mickael Silva, Keith A. Jolley, James E. Bray, Hannes Pouseele, Jörg Rothgänger, Mário Ramirez, João A. Carriço:
TypOn: the microbial typing ontology. J. Biomed. Semant. 5: 43 (2014) - [j7]Andries J. van Tonder, Shilan Mistry, James E. Bray, Dorothea M. C. Hill, Alison J. Cody, Chris L. Farmer, Keith P. Klugman, Anne von Gottberg, Stephen D. Bentley, Julian Parkhill, Keith A. Jolley, Martin C. J. Maiden, Angela B. Brueggemann:
Defining the Estimated Core Genome of Bacterial Populations Using a Bayesian Decision Model. PLoS Comput. Biol. 10(8) (2014) - 2004
- [j6]James E. Bray, Russell L. Marsden, Stuart C. G. Rison, Alexei Savchenko, Aled M. Edwards, Janet M. Thornton, Christine A. Orengo:
A practical and robust sequence search strategy for structural genomics target selection. Bioinform. 20(14): 2288-2295 (2004) - 2003
- [j5]Frances M. G. Pearl, C. F. Bennett, James E. Bray, Andrew P. Harrison, Nigel J. Martin, Adrian J. Shepherd, Ian Sillitoe, Janet M. Thornton, Christine A. Orengo:
The CATH database: an extended protein family resource for structural and functional genomics. Nucleic Acids Res. 31(1): 452-455 (2003) - [j4]Daniel W. A. Buchan, Stuart C. G. Rison, James E. Bray, David A. Lee, Frances M. G. Pearl, Janet M. Thornton, Christine A. Orengo:
Gene3D: structural assignments for the biologist and bioinformaticist alike. Nucleic Acids Res. 31(1): 469-473 (2003) - 2001
- [j3]Frances M. G. Pearl, Nigel J. Martin, James E. Bray, Daniel W. A. Buchan, Andrew P. Harrison, David A. Lee, Gabrielle A. Reeves, Adrian J. Shepherd, Ian Sillitoe, Annabel E. Todd, Janet M. Thornton, Christine A. Orengo:
A rapid classification protocol for the CATH Domain Database to support structural genomics. Nucleic Acids Res. 29(1): 223-227 (2001) - 2000
- [j2]Frances M. G. Pearl, David A. Lee, James E. Bray, Ian Sillitoe, Annabel E. Todd, Andrew P. Harrison, Janet M. Thornton, Christine A. Orengo:
Assigning genomic sequences to CATH. Nucleic Acids Res. 28(1): 277-282 (2000) - 1999
- [j1]Christine A. Orengo, Frances M. G. Pearl, James E. Bray, Annabel E. Todd, A. C. Martin, Loredana Lo Conte, Janet M. Thornton:
The CATH Database provides insights into protein structure/function relationships. Nucleic Acids Res. 27(1): 275-279 (1999)
Conference and Workshop Papers
- 2022
- [c1]Margaret J. Varga, Holly B. Bratcher, Keith A. Jolley, Odile B. Harrison, James E. Bray, Martin C. J. Maiden:
Visual Analytics Exploration of PubMLST Meningitis Genomic Data. BIBM 2022: 2871-2878
Coauthor Index
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