Volume 4, Number 1, Spring 1997

• 
  William E. Hart, Sorin Istrail: Robust Proofs of NP-Hardness for Protein Folding: General Lattices and Energy Potentials. 1-22
• 
  Martin Vingron, Arndt von Haeseler: Towards Integration of Multiple Alignment and Phylogenetic Tree Construction. 23-34
• 
  M. S. Tanushev, Richard Arratia: Central Limit Theorem from Renewal Theory for Several Patterns. 35-44
• 
  Timothy L. Bailey, Michael Gribskov: Score Distributions for Simultaneous Matching to Multiple Motifs. 45-59
• 
  Sophie Schbath: Coverage Processes in Physical Mapping by Anchoring Random Clones. 61-82
• 
  Mikhail P. Ponomarenko, A. N. Kolchanova, Nikolay A. Kolchanov: Generating Programs for Predicting the Activity of Functional Sites. 83-90

Volume 4, Number 2, Spring 1997

• 
  Thomas S. Anantharaman, Bud Mishra, David C. Schwartz: Genomics via Optical Mapping II: Ordered Restriction Maps. 91-118
• 
  Vlado Dancík, Sridhar Hannenhalli, S. Muthukrishnan: Hardness of Flip-Cut Problems from Optical Mapping. 119-125
• 
  John Henderson, Steven Salzberg, Kenneth H. Fasman: Finding Genes in DNA with a Hidden Markov Model. 127-141
• 
  Paul E. Kearney: A Six-Point Condition for Ordinal Matrices. 143-156
• 
  Martin Farach: Recognizing Circular Decompossible Metrics. 157-162
• 
  Dorit S. Hochbaum, Anu Pathria: Path Costs in Evolutionary Tree Reconstruction. 163-175
• 
  L. Zhang: On a Mirkin-Muchnik-Smith Conjecture for Comparing Molecular Phylogenies. 177-187
• 
  Sophie Schbath: An Efficient Statistic to Detect Over-and Under-Represented Words in DNA Sequences. 189-192
• 
  J. Z. Dalgaard, M. J. Moser, Richard Hughey, I. Saira Mian: Statistic Modeling, Phylogenetic Analysis and Strjucture Prediction of a Protein Splicing Domain Common to Infeins and Hedgehog Proteins. 193-214

Volume 4, Number 3, Fall 1997

• 
  Michael S. Waterman, Sorin Istrail, Pavel A. Pevzner: Selected Papers from RECOMB'97 - Preface. 215-216
• 
  Temple F. Smith, Loredana Lo Conte, Jadwiga R. Bienkowska, Chrysanthe Gaitatzes, Robert G. Rogers, Richard H. Lathrop: Current Limitations to Protein Threading Approaches. 217-225
• 
  Ken A. Dill, Andrew T. Phillips, J. Ben Rosen: Protein Structure and Energy Landscape Dependence on Sequence Using a Continuous Energy Function. 227-239
• 
  William E. Hart, Sorin Istrail: Lattice and Off-Lattice Side Chain Models of Protein Folding: Linear Time Structure Prediction Better than 86% of Optimal. 241-259
• 
  Bonnie Berger, Mona Singh: An Iterative Method for Improved Protein Structural Motif Recognition. 261-273
• 
  Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Sridhar Hannenhalli, Martin Farach, S. Muthukrishnan, Steven Skiena: Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model. 275-296
• 
  Sing-Hoi Sze, Pavel A. Pevzner: Las Vegas Algorithms for Gene Recognition: Suboptimal and Error-Tolerant Spliced Alignment. 297-309
• 
  Martin G. Reese, Frank H. Eeckman, David Kulp, David Haussler: Improved Splice Site Detection in Genie. 311-323
• 
  Ying Xu, Edward C. Uberbacher: Automated Gene Identification in Large-Scale Genomic Sequences. 325-338
• 
  Zheng Zhang, William R. Pearson, Webb Miller: Aligning a DNA Sequence with a Protein Sequence. 339-349
• 
  Gary Benson: Sequence Alignment with Tandem Duplication. 351-367
• 
  Eric L. Anson, Eugene W. Myers: ReAligner: A Program for Refining DNA Sequence Multi-Alignments. 369-383
• 
  Tetsuo Shibuya, Hiroshi Imai: New Flexible Approaches for Multiple Sequence Alignment. 385-413
• 
  Benno Schwikowski, Martin Vingron: The Deferred Path Heuristic for the Generalized Tree Alignment Problem. 415-431

Volume 4, Number 4, Winter 1997

• 
  Thomas Christof, Michael Jünger, John D. Kececioglu, Petra Mutzel, Gerhard Reinelt: A Branch-and-Cut Approach to Physical Mapping of Chromosomes by Unique End-Probes. 433-447
• 
  Mudita Jain, Eugene W. Myers: Algorithms for Computing and Integrating Physical Maps Using Unique Probes. 449-466
• 
  Fengzhu Sun, Gary Benson, Norman Arnheim, Michael S. Waterman: Pooling Strategies for Establishing Physical Genome Maps Using FISH. 467-486
• 
  Donna K. Slonim, Leonid Kruglyak, Lincoln Stein, Eric S. Lander: Building Human Genome Maps with Radiation Hybrids. 487-504
• 
  S. C. Heath: Markov Chain Monte Carlo Methods for Radiation Hybrid Mapping. 505-515
• 
  Amir Ben-Dor, Benny Chor: On Constructing Radiation Hybrid Maps. 517-533
• 
  Shili Lin, Terence P. Speed: An Algorithm for Haplotype Analysis. 535-546
• 
  Jaime Cohen, Martin Farach: Numerical Taxonomy on Data: Experimental Results. 547-558
• 
  David Sankoff, Vincent Ferretti, Joseph H. Nadeau: Conserved Segment Identification. 559-565

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