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Publication search results
found 86 matches
- 2016
- Anas Al-Okaily, Chun-Hsi Huang:
ET-Motif: Solving the Exact (l, d)-Planted Motif Problem Using Error Tree Structure. J. Comput. Biol. 23(7): 615-623 (2016) - Andy S. Alic, Ignacio Blanquer:
MuffinInfo: HTML5-Based Statistics Extractor from Next-Generation Sequencing Data. J. Comput. Biol. 23(9): 750-755 (2016) - Lamiaa A. Amar, Nahla A. Belal, Shaheera Rashwan:
Comparing Unlabeled Pedigree Graphs via Covering with Bipartite and Path. J. Comput. Biol. 23(11): 912-922 (2016) - Arfa Anjum, Seema Jaggi, Eldho Varghese, Shwetank Lall, Arpan Bhowmik, Anil Rai:
Identification of Differentially Expressed Genes in RNA-seq Data of Arabidopsis thaliana: A Compound Distribution Approach. J. Comput. Biol. 23(4): 239-247 (2016) - Sabeur Aridhi, Haïtham Sghaier, Manel Zoghlami, Mondher Maddouri, Engelbert Mephu Nguifo:
Prediction of Ionizing Radiation Resistance in Bacteria Using a Multiple Instance Learning Model. J. Comput. Biol. 23(1): 10-20 (2016) - Pavel Avdeyev, Shuai Jiang, Sergey Aganezov Jr., Fei Hu, Max A. Alekseyev:
Reconstruction of Ancestral Genomes in Presence of Gene Gain and Loss. J. Comput. Biol. 23(3): 150-164 (2016) - Christopher L. Barrett, Thomas J. X. Li, Christian M. Reidys:
RNA Secondary Structures Having a Compatible Sequence of Certain Nucleotide Ratios. J. Comput. Biol. 23(11): 857-873 (2016) - Ilan Ben-Bassat, Benny Chor:
CRISPR Detection From Short Reads Using Partial Overlap Graphs. J. Comput. Biol. 23(6): 461-471 (2016) - Surojit Biswas, Meredith McDonald, Derek S. Lundberg, Jeffery L. Dangl, Vladimir Jojic:
Learning Microbial Interaction Networks from Metagenomic Count Data. J. Comput. Biol. 23(6): 526-535 (2016) - Manca Bizjak, Nikolaj Zimic, Miha Mraz, Miha Moskon:
Computational Framework for Modeling Multiple Noncooperative Transcription Factor Binding and Its Application to the Analysis of Nuclear Factor Kappa B Oscillatory Response. J. Comput. Biol. 23(12): 923-933 (2016) - Stefano Bonissone, Pavel A. Pevzner:
Immunoglobulin Classification Using the Colored Antibody Graph. J. Comput. Biol. 23(6): 483-494 (2016) - Paola Bonizzoni, Riccardo Dondi, Gunnar W. Klau, Yuri Pirola, Nadia Pisanti, Simone Zaccaria:
On the Minimum Error Correction Problem for Haplotype Assembly in Diploid and Polyploid Genomes. J. Comput. Biol. 23(9): 718-736 (2016) - Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi:
LSG: An External-Memory Tool to Compute String Graphs for Next-Generation Sequencing Data Assembly. J. Comput. Biol. 23(3): 137-149 (2016) - Cesar M. Camilo, Gustavo M. A. Lima, Fernando V. Maluf, Rafael V. C. Guido, Igor Polikarpov:
HTP-OligoDesigner: An Online Primer Design Tool for High-Throughput Gene Cloning and Site-Directed Mutagenesis. J. Comput. Biol. 23(1): 27-29 (2016) - Stefan Canzar, Khaled M. Elbassioni, Mitchell Jones, Julián Mestre:
Resolving Conflicting Predictions from Multimapping Reads. J. Comput. Biol. 23(3): 203-217 (2016) - Jose Nelson Perez Castillo, Miguel Gutierrez, Nelson Enrique Vera Parra:
Computational Performance Assessment of k-mer Counting Algorithms. J. Comput. Biol. 23(4): 248-255 (2016) - Deeparnab Chakrabarty, Sampath Kannan, Kevin Tian:
Detecting Character Dependencies in Stochastic Models of Evolution. J. Comput. Biol. 23(3): 180-191 (2016) - Shi-Yi Chen, Feilong Deng, Ying Huang, Xianbo Jia, Yi-Ping Liu, Song-Jia Lai:
bioOTU: An Improved Method for Simultaneous Taxonomic Assignments and Operational Taxonomic Units Clustering of 16s rRNA Gene Sequences. J. Comput. Biol. 23(4): 229-238 (2016) - Zhi-Zhong Chen, Fei Deng, Chao Shen, Yiji Wang, Lusheng Wang:
Better ILP-Based Approaches to Haplotype Assembly. J. Comput. Biol. 23(7): 537-552 (2016) - Duo Chen, Jiasong Wang, Ming Yan, Forrest Sheng Bao:
A Complex Prime Numerical Representation of Amino Acids for Protein Function Comparison. J. Comput. Biol. 23(8): 669-677 (2016) - Jiawen Chen, Zhong-Ru Xie, Yinghao Wu:
Elucidating the Functional Roles of Spatial Organization in Cross-Membrane Signal Transduction by a Hybrid Simulation Method. J. Comput. Biol. 23(7): 566-584 (2016) - Feilong Deng, Shi-Yi Chen:
dbHT-Trans: An Efficient Tool for Filtering the Protein-Encoding Transcripts Assembled by RNA-Seq According to Search for Homologous Proteins. J. Comput. Biol. 23(1): 1-9 (2016) - Benjamin Drinkwater, Michael A. Charleston:
RASCAL: A Randomized Approach for Coevolutionary Analysis. J. Comput. Biol. 23(3): 218-227 (2016) - Eduard Fomin:
A Simple Approach to the Reconstruction of a Set of Points from the Multiset of n2 Pairwise Distances in n2 Steps for the Sequencing Problem: I. Theory. J. Comput. Biol. 23(9): 769-775 (2016) - Eduard Fomin:
A Simple Approach to the Reconstruction of a Set of Points from the Multiset of n2 Pairwise Distances in n2 Steps for the Sequencing Problem: II. Algorithm. J. Comput. Biol. 23(12): 934-942 (2016) - Rasmus Fonseca, Henry van den Bedem, Julie Bernauer:
Probing RNA Native Conformational Ensembles with Structural Constraints. J. Comput. Biol. 23(5): 362-371 (2016) - Sergio Gálvez, Adis Ferusic, Francisco José Esteban, Pilar Hernández, Juan Antonio Caballero, Gabriel Dorado:
Speeding-up Bioinformatics Algorithms with Heterogeneous Architectures: Highly Heterogeneous Smith-Waterman (HHeterSW). J. Comput. Biol. 23(10): 801-809 (2016) - Kerstin Gärtner, Andreas Futschik:
Improved Versions of Common Estimators of the Recombination Rate. J. Comput. Biol. 23(9): 756-768 (2016) - Christopher Girdlestone, Steven Hayward:
The DynDom3D Webserver for the Analysis of Domain Movements in Multimeric Proteins. J. Comput. Biol. 23(1): 21-26 (2016) - Huichao Gong, Sai Zhang, Jiangdian Wang, Haipeng Gong, Jianyang Zeng:
Constructing Structure Ensembles of Intrinsically Disordered Proteins from Chemical Shift Data. J. Comput. Biol. 23(5): 300-310 (2016)
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