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@article{DBLP:journals/jcb/Al-OkailyH16,
author = {Anas Al{-}Okaily and
Chun{-}Hsi Huang},
title = {ET-Motif: Solving the Exact (l, d)-Planted Motif Problem Using Error
Tree Structure},
journal = {J. Comput. Biol.},
volume = {23},
number = {7},
pages = {615--623},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0238},
doi = {10.1089/CMB.2015.0238},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/Al-OkailyH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/AlicB16,
author = {Andy S. Alic and
Ignacio Blanquer},
title = {MuffinInfo: HTML5-Based Statistics Extractor from Next-Generation
Sequencing Data},
journal = {J. Comput. Biol.},
volume = {23},
number = {9},
pages = {750--755},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0031},
doi = {10.1089/CMB.2016.0031},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/AlicB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/AmarBR16,
author = {Lamiaa A. Amar and
Nahla A. Belal and
Shaheera Rashwan},
title = {Comparing Unlabeled Pedigree Graphs \emph{via} Covering with Bipartite
and Path},
journal = {J. Comput. Biol.},
volume = {23},
number = {11},
pages = {912--922},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0040},
doi = {10.1089/CMB.2016.0040},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/AmarBR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/AnjumJVLBR16,
author = {Arfa Anjum and
Seema Jaggi and
Eldho Varghese and
Shwetank Lall and
Arpan Bhowmik and
Anil Rai},
title = {Identification of Differentially Expressed Genes in RNA-seq Data of
\emph{Arabidopsis thaliana}: {A} Compound Distribution Approach},
journal = {J. Comput. Biol.},
volume = {23},
number = {4},
pages = {239--247},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0205},
doi = {10.1089/CMB.2015.0205},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/AnjumJVLBR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/AridhiSZMN16,
author = {Sabeur Aridhi and
Ha{\"{\i}}tham Sghaier and
Manel Zoghlami and
Mondher Maddouri and
Engelbert Mephu Nguifo},
title = {Prediction of Ionizing Radiation Resistance in Bacteria Using a Multiple
Instance Learning Model},
journal = {J. Comput. Biol.},
volume = {23},
number = {1},
pages = {10--20},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0134},
doi = {10.1089/CMB.2015.0134},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/AridhiSZMN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/AvdeyevJAHA16,
author = {Pavel Avdeyev and
Shuai Jiang and
Sergey Aganezov Jr. and
Fei Hu and
Max A. Alekseyev},
title = {Reconstruction of Ancestral Genomes in Presence of Gene Gain and Loss},
journal = {J. Comput. Biol.},
volume = {23},
number = {3},
pages = {150--164},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0160},
doi = {10.1089/CMB.2015.0160},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/AvdeyevJAHA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BarrettLR16,
author = {Christopher L. Barrett and
Thomas J. X. Li and
Christian M. Reidys},
title = {{RNA} Secondary Structures Having a Compatible Sequence of Certain
Nucleotide Ratios},
journal = {J. Comput. Biol.},
volume = {23},
number = {11},
pages = {857--873},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0049},
doi = {10.1089/CMB.2016.0049},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BarrettLR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Ben-BassatC16,
author = {Ilan Ben{-}Bassat and
Benny Chor},
title = {{CRISPR} Detection From Short Reads Using Partial Overlap Graphs},
journal = {J. Comput. Biol.},
volume = {23},
number = {6},
pages = {461--471},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0226},
doi = {10.1089/CMB.2015.0226},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Ben-BassatC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BiswasMLDJ16,
author = {Surojit Biswas and
Meredith McDonald and
Derek S. Lundberg and
Jeffery L. Dangl and
Vladimir Jojic},
title = {Learning Microbial Interaction Networks from Metagenomic Count Data},
journal = {J. Comput. Biol.},
volume = {23},
number = {6},
pages = {526--535},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0061},
doi = {10.1089/CMB.2016.0061},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/BiswasMLDJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BizjakZMM16,
author = {Manca Bizjak and
Nikolaj Zimic and
Miha Mraz and
Miha Moskon},
title = {Computational Framework for Modeling Multiple Noncooperative Transcription
Factor Binding and Its Application to the Analysis of Nuclear Factor
Kappa {B} Oscillatory Response},
journal = {J. Comput. Biol.},
volume = {23},
number = {12},
pages = {923--933},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0065},
doi = {10.1089/CMB.2016.0065},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BizjakZMM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BonissoneP16,
author = {Stefano Bonissone and
Pavel A. Pevzner},
title = {Immunoglobulin Classification Using the Colored Antibody Graph},
journal = {J. Comput. Biol.},
volume = {23},
number = {6},
pages = {483--494},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0010},
doi = {10.1089/CMB.2016.0010},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BonissoneP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BonizzoniDKPPZ16,
author = {Paola Bonizzoni and
Riccardo Dondi and
Gunnar W. Klau and
Yuri Pirola and
Nadia Pisanti and
Simone Zaccaria},
title = {On the Minimum Error Correction Problem for Haplotype Assembly in
Diploid and Polyploid Genomes},
journal = {J. Comput. Biol.},
volume = {23},
number = {9},
pages = {718--736},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0220},
doi = {10.1089/CMB.2015.0220},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/BonizzoniDKPPZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BonizzoniVPPR16,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Yuri Pirola and
Marco Previtali and
Raffaella Rizzi},
title = {{LSG:} An External-Memory Tool to Compute String Graphs for Next-Generation
Sequencing Data Assembly},
journal = {J. Comput. Biol.},
volume = {23},
number = {3},
pages = {137--149},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0172},
doi = {10.1089/CMB.2015.0172},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/BonizzoniVPPR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/CamiloLMGP16,
author = {Cesar M. Camilo and
Gustavo M. A. Lima and
Fernando V. Maluf and
Rafael V. C. Guido and
Igor Polikarpov},
title = {HTP-OligoDesigner: An Online Primer Design Tool for High-Throughput
Gene Cloning and Site-Directed Mutagenesis},
journal = {J. Comput. Biol.},
volume = {23},
number = {1},
pages = {27--29},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0148},
doi = {10.1089/CMB.2015.0148},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/CamiloLMGP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/CanzarEJM16,
author = {Stefan Canzar and
Khaled M. Elbassioni and
Mitchell Jones and
Juli{\'{a}}n Mestre},
title = {Resolving Conflicting Predictions from Multimapping Reads},
journal = {J. Comput. Biol.},
volume = {23},
number = {3},
pages = {203--217},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0164},
doi = {10.1089/CMB.2015.0164},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/CanzarEJM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/CastilloGP16,
author = {Jose Nelson Perez Castillo and
Miguel Gutierrez and
Nelson Enrique Vera Parra},
title = {Computational Performance Assessment of k-mer Counting Algorithms},
journal = {J. Comput. Biol.},
volume = {23},
number = {4},
pages = {248--255},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0199},
doi = {10.1089/CMB.2015.0199},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/CastilloGP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ChakrabartyKT16,
author = {Deeparnab Chakrabarty and
Sampath Kannan and
Kevin Tian},
title = {Detecting Character Dependencies in Stochastic Models of Evolution},
journal = {J. Comput. Biol.},
volume = {23},
number = {3},
pages = {180--191},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0099},
doi = {10.1089/CMB.2015.0099},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ChakrabartyKT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ChenDHJLL16,
author = {Shi{-}Yi Chen and
Feilong Deng and
Ying Huang and
Xianbo Jia and
Yi{-}Ping Liu and
Song{-}Jia Lai},
title = {bioOTU: An Improved Method for Simultaneous Taxonomic Assignments
and Operational Taxonomic Units Clustering of 16s rRNA Gene Sequences},
journal = {J. Comput. Biol.},
volume = {23},
number = {4},
pages = {229--238},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0214},
doi = {10.1089/CMB.2015.0214},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ChenDHJLL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ChenDSWW16,
author = {Zhi{-}Zhong Chen and
Fei Deng and
Chao Shen and
Yiji Wang and
Lusheng Wang},
title = {Better ILP-Based Approaches to Haplotype Assembly},
journal = {J. Comput. Biol.},
volume = {23},
number = {7},
pages = {537--552},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0035},
doi = {10.1089/CMB.2015.0035},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ChenDSWW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ChenWYB16,
author = {Duo Chen and
Jiasong Wang and
Ming Yan and
Forrest Sheng Bao},
title = {A Complex Prime Numerical Representation of Amino Acids for Protein
Function Comparison},
journal = {J. Comput. Biol.},
volume = {23},
number = {8},
pages = {669--677},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0178},
doi = {10.1089/CMB.2015.0178},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ChenWYB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ChenXW16,
author = {Jiawen Chen and
Zhong{-}Ru Xie and
Yinghao Wu},
title = {Elucidating the Functional Roles of Spatial Organization in Cross-Membrane
Signal Transduction by a Hybrid Simulation Method},
journal = {J. Comput. Biol.},
volume = {23},
number = {7},
pages = {566--584},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0227},
doi = {10.1089/CMB.2015.0227},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ChenXW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/DengC16,
author = {Feilong Deng and
Shi{-}Yi Chen},
title = {dbHT-Trans: An Efficient Tool for Filtering the Protein-Encoding Transcripts
Assembled by RNA-Seq According to Search for Homologous Proteins},
journal = {J. Comput. Biol.},
volume = {23},
number = {1},
pages = {1--9},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0137},
doi = {10.1089/CMB.2015.0137},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/DengC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/DrinkwaterC16,
author = {Benjamin Drinkwater and
Michael A. Charleston},
title = {{RASCAL:} {A} Randomized Approach for Coevolutionary Analysis},
journal = {J. Comput. Biol.},
volume = {23},
number = {3},
pages = {218--227},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0111},
doi = {10.1089/CMB.2015.0111},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/DrinkwaterC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Fomin16,
author = {Eduard Fomin},
title = {A Simple Approach to the Reconstruction of a Set of Points from the
Multiset of \emph{n}\({}^{\mbox{2}}\) Pairwise Distances in \emph{n}\({}^{\mbox{2}}\)
Steps for the Sequencing Problem: I. Theory},
journal = {J. Comput. Biol.},
volume = {23},
number = {9},
pages = {769--775},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0044},
doi = {10.1089/CMB.2016.0044},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Fomin16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Fomin16a,
author = {Eduard Fomin},
title = {A Simple Approach to the Reconstruction of a Set of Points from the
Multiset of \emph{n}\({}^{\mbox{2}}\) Pairwise Distances in \emph{n}\({}^{\mbox{2}}\)
Steps for the Sequencing Problem: {II.} Algorithm},
journal = {J. Comput. Biol.},
volume = {23},
number = {12},
pages = {934--942},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0046},
doi = {10.1089/CMB.2016.0046},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Fomin16a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/FonsecaBB16,
author = {Rasmus Fonseca and
Henry van den Bedem and
Julie Bernauer},
title = {Probing {RNA} Native Conformational Ensembles with Structural Constraints},
journal = {J. Comput. Biol.},
volume = {23},
number = {5},
pages = {362--371},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0201},
doi = {10.1089/CMB.2015.0201},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/FonsecaBB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/GalvezFEHCD16,
author = {Sergio G{\'{a}}lvez and
Adis Ferusic and
Francisco Jos{\'{e}} Esteban and
Pilar Hern{\'{a}}ndez and
Juan Antonio Caballero and
Gabriel Dorado},
title = {Speeding-up Bioinformatics Algorithms with Heterogeneous Architectures:
Highly Heterogeneous Smith-Waterman (HHeterSW)},
journal = {J. Comput. Biol.},
volume = {23},
number = {10},
pages = {801--809},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0237},
doi = {10.1089/CMB.2015.0237},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/GalvezFEHCD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/GartnerF16,
author = {Kerstin G{\"{a}}rtner and
Andreas Futschik},
title = {Improved Versions of Common Estimators of the Recombination Rate},
journal = {J. Comput. Biol.},
volume = {23},
number = {9},
pages = {756--768},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0039},
doi = {10.1089/CMB.2016.0039},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/GartnerF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/GirdlestoneH16,
author = {Christopher Girdlestone and
Steven Hayward},
title = {The DynDom3D Webserver for the Analysis of Domain Movements in Multimeric
Proteins},
journal = {J. Comput. Biol.},
volume = {23},
number = {1},
pages = {21--26},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0143},
doi = {10.1089/CMB.2015.0143},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/GirdlestoneH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/GongZWGZ16,
author = {Huichao Gong and
Sai Zhang and
Jiangdian Wang and
Haipeng Gong and
Jianyang Zeng},
title = {Constructing Structure Ensembles of Intrinsically Disordered Proteins
from Chemical Shift Data},
journal = {J. Comput. Biol.},
volume = {23},
number = {5},
pages = {300--310},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0184},
doi = {10.1089/CMB.2015.0184},
timestamp = {Wed, 02 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/GongZWGZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/GozT16,
author = {Eli Goz and
Tamir Tuller},
title = {Evidence of a Direct Evolutionary Selection for Strong Folding and
Mutational Robustness Within {HIV} Coding Regions},
journal = {J. Comput. Biol.},
volume = {23},
number = {8},
pages = {641--650},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0052},
doi = {10.1089/CMB.2016.0052},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/GozT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/GuanZN16,
author = {Boxin Guan and
Changsheng Zhang and
Jiaxu Ning},
title = {{EDGA:} {A} Population Evolution Direction-Guided Genetic Algorithm
for Protein-Ligand Docking},
journal = {J. Comput. Biol.},
volume = {23},
number = {7},
pages = {585--596},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0190},
doi = {10.1089/CMB.2015.0190},
timestamp = {Tue, 03 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/GuanZN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/GuoLM16,
author = {Wenchuan Guo and
Zhenqiu Liu and
Shujie Ma},
title = {Nonparametric Regularized Regression for Phenotype-Associated Taxa
Selection and Network Construction with Metagenomic Count Data},
journal = {J. Comput. Biol.},
volume = {23},
number = {11},
pages = {877--890},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0023},
doi = {10.1089/CMB.2016.0023},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/GuoLM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/GuoSW16,
author = {Qiang{-}Hui Guo and
Lisa Hui Sun and
Jian Wang},
title = {Enumeration of Extended \emph{m}-Regular Linear Stacks},
journal = {J. Comput. Biol.},
volume = {23},
number = {12},
pages = {943--956},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0041},
doi = {10.1089/CMB.2016.0041},
timestamp = {Wed, 01 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/GuoSW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HallenD16,
author = {Mark A. Hallen and
Bruce Randall Donald},
title = {comets (Constrained Optimization of Multistate Energies by Tree Search):
{A} Provable and Efficient Protein Design Algorithm to Optimize Binding
Affinity and Specificity with Respect to Sequence},
journal = {J. Comput. Biol.},
volume = {23},
number = {5},
pages = {311--321},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0188},
doi = {10.1089/CMB.2015.0188},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/HallenD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HashemifarHX16,
author = {Somaye Hashemifar and
Qixing Huang and
Jinbo Xu},
title = {Joint Alignment of Multiple Protein-Protein Interaction Networks via
Convex Optimization},
journal = {J. Comput. Biol.},
volume = {23},
number = {11},
pages = {903--911},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0025},
doi = {10.1089/CMB.2016.0025},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/HashemifarHX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HernandezY16,
author = {Troy Hernandez and
Jie Yang},
title = {Descriptive Statistics of the Genome: Phylogenetic Classification
of Viruses},
journal = {J. Comput. Biol.},
volume = {23},
number = {10},
pages = {810--820},
year = {2016},
url = {https://doi.org/10.1089/cmb.2013.0132},
doi = {10.1089/CMB.2013.0132},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/HernandezY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HsiaoL16,
author = {Ya{-}Chun Hsiao and
Li{-}Yu Daisy Liu},
title = {A Stepwise Approach of Finding Dependent Variables via Coefficient
of Intrinsic Dependence},
journal = {J. Comput. Biol.},
volume = {23},
number = {1},
pages = {42--55},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0150},
doi = {10.1089/CMB.2015.0150},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/HsiaoL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HuL16,
author = {Yucheng Hu and
John S. Lowengrub},
title = {Collective Properties of a Transcription Initiation Model Under Varying
Environment},
journal = {J. Comput. Biol.},
volume = {23},
number = {1},
pages = {56--66},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0144},
doi = {10.1089/CMB.2015.0144},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/HuL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HuY16,
author = {Yucheng Hu and
Gongrong Yang},
title = {Sequence Evolution Under Constraints: Lessons Learned from Sudoku},
journal = {J. Comput. Biol.},
volume = {23},
number = {10},
pages = {830--840},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0218},
doi = {10.1089/CMB.2015.0218},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/HuY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Jindalertudomdee16,
author = {Jira Jindalertudomdee and
Morihiro Hayashida and
Tatsuya Akutsu},
title = {Enumeration Method for Structural Isomers Containing User-Defined
Structures Based on Breadth-First Search Approach},
journal = {J. Comput. Biol.},
volume = {23},
number = {8},
pages = {625--640},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0056},
doi = {10.1089/CMB.2016.0056},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/Jindalertudomdee16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/JohnstonR16,
author = {Sean B. Johnston and
Ronald T. Raines},
title = {PTENpred: {A} Designer Protein Impact Predictor for PTEN-related Disorders},
journal = {J. Comput. Biol.},
volume = {23},
number = {12},
pages = {969--975},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0058},
doi = {10.1089/CMB.2016.0058},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/JohnstonR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/JouJGD16,
author = {Jonathan D. Jou and
Swati Jain and
Ivelin Georgiev and
Bruce Randall Donald},
title = {BWM*: {A} Novel, Provable, Ensemble-based Dynamic Programming Algorithm
for Sparse Approximations of Computational Protein Design},
journal = {J. Comput. Biol.},
volume = {23},
number = {6},
pages = {413--424},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0194},
doi = {10.1089/CMB.2015.0194},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/JouJGD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LaimighoferKBT16,
author = {Michael Laimighofer and
Jan Krumsiek and
Florian A. B{\"{u}}ttner and
Fabian J. Theis},
title = {Unbiased Prediction and Feature Selection in High-Dimensional Survival
Regression},
journal = {J. Comput. Biol.},
volume = {23},
number = {4},
pages = {279--290},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0192},
doi = {10.1089/CMB.2015.0192},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/LaimighoferKBT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LeeLKX16,
author = {Seunghak Lee and
Aur{\'{e}}lie C. Lozano and
Prabhanjan Kambadur and
Eric P. Xing},
title = {An Efficient Nonlinear Regression Approach for Genome-wide Detection
of Marginal and Interacting Genetic Variations},
journal = {J. Comput. Biol.},
volume = {23},
number = {5},
pages = {372--389},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0202},
doi = {10.1089/CMB.2015.0202},
timestamp = {Fri, 29 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/LeeLKX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LeelanandaJK16,
author = {Sumudu P. Leelananda and
Robert L. Jernigan and
Andrzej Kloczkowski},
title = {Predicting Designability of Small Proteins from Graph Features of
Contact Maps},
journal = {J. Comput. Biol.},
volume = {23},
number = {5},
pages = {400--411},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0209},
doi = {10.1089/CMB.2015.0209},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/LeelanandaJK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LiCW16,
author = {Yifeng Li and
Chih{-}Yu Chen and
Wyeth W. Wasserman},
title = {Deep Feature Selection: Theory and Application to Identify Enhancers
and Promoters},
journal = {J. Comput. Biol.},
volume = {23},
number = {5},
pages = {322--336},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0189},
doi = {10.1089/CMB.2015.0189},
timestamp = {Fri, 30 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/LiCW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LiSLXL16,
author = {Haiou Li and
Lu Sun and
Sheng Luo and
Xiaoyan Xia and
Qiang Lyu},
title = {Modeling Protein Loop Structure by Cyclic Coordinate Descent-based
Approach},
journal = {J. Comput. Biol.},
volume = {23},
number = {2},
pages = {123--136},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0145},
doi = {10.1089/CMB.2015.0145},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/LiSLXL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LiuLDMP16,
author = {Zhenqiu Liu and
Shili Lin and
Nan Deng and
Dermot P. B. McGovern and
Steven T. Piantadosi},
title = {Sparse Inverse Covariance Estimation with \emph{L}\({}_{\mbox{0}}\)
Penalty for Network Construction with Omics Data},
journal = {J. Comput. Biol.},
volume = {23},
number = {3},
pages = {192--202},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0102},
doi = {10.1089/CMB.2015.0102},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/LiuLDMP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LoboHL16,
author = {Daniel Lobo and
Jennifer Hammelman and
Michael Levin},
title = {MoCha: Molecular Characterization of Unknown Pathways},
journal = {J. Comput. Biol.},
volume = {23},
number = {4},
pages = {291--297},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0211},
doi = {10.1089/CMB.2015.0211},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/LoboHL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/MadecPGRLH16,
author = {Morgan Madec and
Fran{\c{c}}ois P{\^{e}}cheux and
Yves Gendrault and
Elise Rosati and
Christophe Lallement and
Jacques Haiech},
title = {GeNeDA: An Open-Source Workflow for Design Automation of Gene Regulatory
Networks Inspired from Microelectronics},
journal = {J. Comput. Biol.},
volume = {23},
number = {10},
pages = {841--855},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0229},
doi = {10.1089/CMB.2015.0229},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/MadecPGRLH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ManescuK16,
author = {David Manescu and
Uri Keich},
title = {A Symmetric Length-Aware Enrichment Test},
journal = {J. Comput. Biol.},
volume = {23},
number = {6},
pages = {508--525},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0038},
doi = {10.1089/CMB.2016.0038},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ManescuK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/MazzaWRS16,
author = {Arnon Mazza and
Allon Wagner and
Eytan Ruppin and
Roded Sharan},
title = {Functional Alignment of Metabolic Networks},
journal = {J. Comput. Biol.},
volume = {23},
number = {5},
pages = {390--399},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0203},
doi = {10.1089/CMB.2015.0203},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/MazzaWRS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/McGraneC16,
author = {Martin McGrane and
Michael A. Charleston},
title = {Biological Network Edit Distance},
journal = {J. Comput. Biol.},
volume = {23},
number = {9},
pages = {776--788},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0062},
doi = {10.1089/CMB.2016.0062},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/McGraneC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/MierA16,
author = {Pablo Mier and
Miguel A. Andrade{-}Navarro},
title = {FastaHerder2: Four Ways to Research Protein Function and Evolution
with Clustering and Clustered Databases},
journal = {J. Comput. Biol.},
volume = {23},
number = {4},
pages = {270--278},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0191},
doi = {10.1089/CMB.2015.0191},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/MierA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/MoreP16,
author = {Ravi Prabhakar More and
Hemant J. Purohit},
title = {The Identification of Discriminating Patterns from 16S rRNA Gene to
Generate Signature for Bacillus Genus},
journal = {J. Comput. Biol.},
volume = {23},
number = {8},
pages = {651--661},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0002},
doi = {10.1089/CMB.2016.0002},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/MoreP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/OReillyBVV16,
author = {Eliza O'Reilly and
Fran{\c{c}}ois Baccelli and
Gustavo de Veciana and
Haris Vikalo},
title = {End-to-End Optimization of High-Throughput {DNA} Sequencing},
journal = {J. Comput. Biol.},
volume = {23},
number = {10},
pages = {789--800},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0185},
doi = {10.1089/CMB.2015.0185},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/OReillyBVV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/OrensteinB16,
author = {Yaron Orenstein and
Bonnie Berger},
title = {Efficient Design of Compact Unstructured {RNA} Libraries Covering
All \emph{k}-mers},
journal = {J. Comput. Biol.},
volume = {23},
number = {2},
pages = {67--79},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0179},
doi = {10.1089/CMB.2015.0179},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/OrensteinB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/PanDZHDZX16,
author = {Yuchao Pan and
Yuxi Dong and
Jingtian Zhou and
Mark Hallen and
Bruce Randall Donald and
Jianyang Zeng and
Wei Xu},
title = {cOSPREY: {A} Cloud-Based Distributed Algorithm for Large-Scale Computational
Protein Design},
journal = {J. Comput. Biol.},
volume = {23},
number = {9},
pages = {737--749},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0234},
doi = {10.1089/CMB.2015.0234},
timestamp = {Wed, 02 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/PanDZHDZX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/PengLL16,
author = {Xiaoling Peng and
Gang Li and
Zhenqiu Liu},
title = {Zero-Inflated Beta Regression for Differential Abundance Analysis
with Metagenomics Data},
journal = {J. Comput. Biol.},
volume = {23},
number = {2},
pages = {102--110},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0157},
doi = {10.1089/CMB.2015.0157},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/PengLL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/PepeD16,
author = {Daniele Pepe and
Jin Hwan Do},
title = {Comparison of Perturbed Pathways in Two Different Cell Models for
Parkinson's Disease with Structural Equation Model},
journal = {J. Comput. Biol.},
volume = {23},
number = {2},
pages = {90--101},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0156},
doi = {10.1089/CMB.2015.0156},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/PepeD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/PereiraWKA16,
author = {Mariana Buongermino Pereira and
Mikael Wallroth and
Erik Kristiansson and
Marina Axelson{-}Fisk},
title = {HattCI: Fast and Accurate \emph{attC} site Identification Using Hidden
Markov Models},
journal = {J. Comput. Biol.},
volume = {23},
number = {11},
pages = {891--902},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0024},
doi = {10.1089/CMB.2016.0024},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/PereiraWKA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/PirogovRKG16,
author = {Sergey Pirogov and
Alexander Rybko and
Anastasia S. Kalinina and
Mikhail S. Gelfand},
title = {Recombination Processes and Nonlinear Markov Chains},
journal = {J. Comput. Biol.},
volume = {23},
number = {9},
pages = {711--717},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0051},
doi = {10.1089/CMB.2016.0051},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/PirogovRKG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/PirroMGPCM16,
author = {Stefano Pirr{\`{o}} and
Antonella Minutolo and
Andrea Galgani and
Marina Potest{\`{a}} and
Vittorio Colizzi and
Carla Montesano},
title = {Bioinformatics Prediction and Experimental Validation of MicroRNAs
Involved in Cross-Kingdom Interaction},
journal = {J. Comput. Biol.},
volume = {23},
number = {12},
pages = {976--989},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0059},
doi = {10.1089/CMB.2016.0059},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/PirroMGPCM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Przytycka16,
author = {Teresa M. Przytycka},
title = {Preface},
journal = {J. Comput. Biol.},
volume = {23},
number = {5},
pages = {299},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.29001.tp},
doi = {10.1089/CMB.2016.29001.TP},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Przytycka16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Ristov16,
author = {Strahil Ristov},
title = {A Fast and Simple Pattern Matching with Hamming Distance on Large
Alphabets},
journal = {J. Comput. Biol.},
volume = {23},
number = {11},
pages = {874--876},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0020},
doi = {10.1089/CMB.2016.0020},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Ristov16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/RohaniMWC16,
author = {Leyla Rohani and
Derrick J. Morton and
Xiao{-}Qian Wang and
Jaideep Chaudhary},
title = {Relative Stability of Wild-Type and Mutant p53 Core Domain: {A} Molecular
Dynamic Study},
journal = {J. Comput. Biol.},
volume = {23},
number = {2},
pages = {80--89},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0163},
doi = {10.1089/CMB.2015.0163},
timestamp = {Fri, 10 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/RohaniMWC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SalmelaSMT16,
author = {Leena Salmela and
Kristoffer Sahlin and
Veli M{\"{a}}kinen and
Alexandru I. Tomescu},
title = {Gap Filling as Exact Path Length Problem},
journal = {J. Comput. Biol.},
volume = {23},
number = {5},
pages = {347--361},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0197},
doi = {10.1089/CMB.2015.0197},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SalmelaSMT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SarrDFR16,
author = {Abdoulaye Sarr and
Anya D{\'{e}}silles and
Alexandra Fronville and
Vincent Rodin},
title = {A Viability Approach for Robustness Measurement, Organizational Autopoiesis,
and Cell Turnover in a Multicellular System},
journal = {J. Comput. Biol.},
volume = {23},
number = {4},
pages = {256--269},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0187},
doi = {10.1089/CMB.2015.0187},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SarrDFR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SeferDK16,
author = {Emre Sefer and
Geet Duggal and
Carl Kingsford},
title = {Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent
Mixing Structures in Cell Subpopulations},
journal = {J. Comput. Biol.},
volume = {23},
number = {6},
pages = {425--438},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0210},
doi = {10.1089/CMB.2015.0210},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SeferDK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SerraRF16,
author = {Fabrizio Serra and
Chiara Romualdi and
Federico Fogolari},
title = {Similarity Measures Based on the Overlap of Ranked Genes Are Effective
for Comparison and Classification of Microarray Data},
journal = {J. Comput. Biol.},
volume = {23},
number = {7},
pages = {603--614},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0057},
doi = {10.1089/CMB.2015.0057},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SerraRF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ShaoM16,
author = {Mingfu Shao and
Bernard M. E. Moret},
title = {A Fast and Exact Algorithm for the Exemplar Breakpoint Distance},
journal = {J. Comput. Biol.},
volume = {23},
number = {5},
pages = {337--346},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0193},
doi = {10.1089/CMB.2015.0193},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ShaoM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SmolyCSYZ16,
author = {Ilan Y. Smoly and
Amir Carmel and
Yonat Shemer{-}Avni and
Esti Yeger Lotem and
Michal Ziv{-}Ukelson},
title = {Algorithms for Regular Tree Grammar Network Search and Their Application
to Mining Human-viral Infection Patterns},
journal = {J. Comput. Biol.},
volume = {23},
number = {3},
pages = {165--179},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0168},
doi = {10.1089/CMB.2015.0168},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SmolyCSYZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ThankachanAA16,
author = {Sharma V. Thankachan and
Alberto Apostolico and
Srinivas Aluru},
title = {A Provably Efficient Algorithm for the \emph{k}-Mismatch Average Common
Substring Problem},
journal = {J. Comput. Biol.},
volume = {23},
number = {6},
pages = {472--482},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0235},
doi = {10.1089/CMB.2015.0235},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ThankachanAA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ThankachanCLAA16,
author = {Sharma V. Thankachan and
Sriram P. Chockalingam and
Yongchao Liu and
Alberto Apostolico and
Srinivas Aluru},
title = {{ALFRED:} {A} Practical Method for Alignment-Free Distance Computation},
journal = {J. Comput. Biol.},
volume = {23},
number = {6},
pages = {452--460},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0217},
doi = {10.1089/CMB.2015.0217},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ThankachanCLAA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/TraykovAY16,
author = {Metodi Traykov and
Slav Angelov and
Nicola Yanev},
title = {A New Heuristic Algorithm for Protein Folding in the {HP} Model},
journal = {J. Comput. Biol.},
volume = {23},
number = {8},
pages = {662--668},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0015},
doi = {10.1089/CMB.2016.0015},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/TraykovAY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/VandinRU16,
author = {Fabio Vandin and
Benjamin J. Raphael and
Eli Upfal},
title = {On the Sample Complexity of Cancer Pathways Identification},
journal = {J. Comput. Biol.},
volume = {23},
number = {1},
pages = {30--41},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0100},
doi = {10.1089/CMB.2015.0100},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/VandinRU16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/WangC16,
author = {Yuandi Wang and
Jinyu Cong},
title = {An Improved Model of Nonuniform Coleochaete Cell Division},
journal = {J. Comput. Biol.},
volume = {23},
number = {8},
pages = {693--709},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0021},
doi = {10.1089/CMB.2016.0021},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/WangC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/WangWZYXYY16,
author = {Yi Wang and
Shuangshuang Wang and
Dongjie Zhou and
Shuai Yang and
Yongchao Xu and
Chao Yang and
Long Yang},
title = {CsSNP: {A} Web-Based Tool for the Detecting of Comparative Segments
SNPs},
journal = {J. Comput. Biol.},
volume = {23},
number = {7},
pages = {597--602},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0215},
doi = {10.1089/CMB.2015.0215},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/WangWZYXYY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/YangCP16,
author = {Shuo Yang and
Shai Carmi and
Itsik Pe'er},
title = {Rapidly Registering Identity-by-Descent Across Ancestral Recombination
Graphs},
journal = {J. Comput. Biol.},
volume = {23},
number = {6},
pages = {495--507},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0016},
doi = {10.1089/CMB.2016.0016},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/YangCP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Zhang16,
author = {Louxin Zhang},
title = {On Tree-Based Phylogenetic Networks},
journal = {J. Comput. Biol.},
volume = {23},
number = {7},
pages = {553--565},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0228},
doi = {10.1089/CMB.2015.0228},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Zhang16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ZhaoHZXWG16,
author = {Shufang Zhao and
Yichao He and
Xinlu Zhang and
Wen Xu and
Weili Wu and
Suogang Gao},
title = {Group Testing with Multiple Inhibitor Sets and Error-Tolerant and
Its Decoding Algorithms},
journal = {J. Comput. Biol.},
volume = {23},
number = {10},
pages = {821--829},
year = {2016},
url = {https://doi.org/10.1089/cmb.2014.0202},
doi = {10.1089/CMB.2014.0202},
timestamp = {Thu, 02 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ZhaoHZXWG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ZhouWZ16,
author = {Yichao Zhou and
Yuexin Wu and
Jianyang Zeng},
title = {Computational Protein Design Using {AND/OR} Branch-and-Bound Search},
journal = {J. Comput. Biol.},
volume = {23},
number = {6},
pages = {439--451},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0212},
doi = {10.1089/CMB.2015.0212},
timestamp = {Wed, 02 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/ZhouWZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ZhuM16,
author = {Xiujun (Sylvia) Zhu and
Monnie McGee},
title = {Metagenomic Classification Using an Abstraction Augmented Markov Model},
journal = {J. Comput. Biol.},
volume = {23},
number = {2},
pages = {111--122},
year = {2016},
url = {https://doi.org/10.1089/cmb.2015.0141},
doi = {10.1089/CMB.2015.0141},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ZhuM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/deAndres-Galiana16,
author = {Enrique J. deAndr{\'{e}}s{-}Galiana and
Juan Luis Fern{\'{a}}ndez Mart{\'{\i}}nez and
Stephen T. Sonis},
title = {Design of Biomedical Robots for Phenotype Prediction Problems},
journal = {J. Comput. Biol.},
volume = {23},
number = {8},
pages = {678--692},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0008},
doi = {10.1089/CMB.2016.0008},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/deAndres-Galiana16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/deAndres-Galiana16a,
author = {Enrique J. deAndr{\'{e}}s{-}Galiana and
Juan Luis Fern{\'{a}}ndez Mart{\'{\i}}nez and
Leorey N. Saligan and
Stephen T. Sonis},
title = {Impact of Microarray Preprocessing Techniques in Unraveling Biological
Pathways},
journal = {J. Comput. Biol.},
volume = {23},
number = {12},
pages = {957--968},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0042},
doi = {10.1089/CMB.2016.0042},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/deAndres-Galiana16a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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