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Publication search results
found 261 matches
- 2023
- Bartosz Adamczyk, Michal Zurkowski, Marta Szachniuk, Tomasz Zok:
WebTetrado: a webserver to explore quadruplexes in nucleic acid 3D structures. Nucleic Acids Res. 51(W1): 607-612 (2023) - Brian P. Alcock, William Huynh, Romeo Chalil, Keaton W. Smith, Amogelang R. Raphenya, Mateusz A. Wlodarski, Arman Edalatmand, Aaron J. Petkau, Sohaib A. Syed, Kara K. Tsang, Sheridan J. C. Baker, Mugdha Dave, Madeline C. McCarthy, Karyn M. Mukiri, Jalees A. Nasir, Bahar Golbon, Hamna Imtiaz, Xingjian Jiang, Komal Kaur, Megan Kwong, Zi Cheng Liang, Keyu C. Niu, Prabakar Shan, Jasmine Y. J. Yang, Kristen L. Gray, Gemma Hoad, Baofeng Jia, Timsy Bhando, Lindsey A. Carfrae, Maya A. Farha, Shawn French, Rodion Gordzevich, Kenneth Rachwalski, Megan M. Tu, Emily Bordeleau, Damion M. Dooley, Emma J. Griffiths, Haley L. Zubyk, Eric D. Brown, Finlay Maguire, Robert G. Beiko, William W. L. Hsiao, Fiona S. L. Brinkman, Gary H. Van Domselaar, Andrew G. McArthur:
CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database. Nucleic Acids Res. 51(D1): 690-699 (2023) - Kuerbannisha Amahong, Wei Zhang, Ying Zhou, Song Zhang, Jiayi Yin, Fengcheng Li, Hong-Quan Xu, Tian-Ci Yan, Zi-Xuan Yue, Yu-Hong Liu, Tingjun Hou, Yunqing Qiu, Lin Tao, Lianyi Han, Feng Zhu:
CovInter: interaction data between coronavirus RNAs and host proteins. Nucleic Acids Res. 51(D1): 546-556 (2023) - Seth A. Ament, Ricky S. Adkins, Robert Carter, Elena Chrysostomou, Carlo Colantuoni, Jonathan Crabtree, Heather Huot Creasy, Kylee Degatano, Victor Felix, Peter Gandt, Gwenn a Garden, Michelle G. Giglio, Brian R. Herb, Farzaneh Khajouei, Elizabeth Kiernan, Carrie McCracken, Kennedy McDaniel, Suvarna Nadendla, Lance Nickel, Dustin Olley, Joshua Orvis, Joseph P. Receveur, Mike Schor, Shreyash Sonthalia, Timothy L. Tickle, Jessica Way, Ronna Hertzano, Anup A. Mahurkar, Owen R. White:
The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 51(D1): 1075-1085 (2023) - Albert A. Antolin, Domenico Sanfelice, Alisa Crisp, Eloy Villasclaras fernandez, Ioan L. Mica, Yi Chen, Ian Collins, Aled Edwards, Susanne Müller, Bissan Al-Lazikani, Paul Workman:
The Chemical Probes Portal: an expert review-based public resource to empower chemical probe assessment, selection and use. Nucleic Acids Res. 51(D1): 1492-1502 (2023) - Ernesto Aparicio-Puerta, Pascal Hirsch, Georges Pierre Schmartz, Tobias Fehlmann, Verena Keller, Annika Engel, Fabian Kern, Michael Hackenberg, Andreas Keller:
isomiRdb: microRNA expression at isoform resolution. Nucleic Acids Res. 51(D1): 179-185 (2023) - Ernesto Aparicio-Puerta, Pascal Hirsch, Georges Pierre Schmartz, Fabian Kern, Tobias Fehlmann, Andreas Keller:
miEAA 2023: updates, new functional microRNA sets and improved enrichment visualizations. Nucleic Acids Res. 51(W1): 319-325 (2023) - Ricardo Avila, Vincent Rubinetti, Xinghua Zhou, Dongbo Hu, Zhongchao Qian, Marco Alvarado Cano, Everaldo Rodrigo Rodolpho, Ginger Tsueng, Casey S. Greene, Chunlei Wu:
MyGeneset.info: an interactive and programmatic platform for community-curated and user-created collections of genes. Nucleic Acids Res. 51(W1): 350-356 (2023) - Sorin I. Avram, Thomas B. Wilson, Ramona Curpan, Liliana Halip, Ana Borota, Alina Bora, Cristian Bologa, Jayme Holmes, Jeffrey Knockel, Jeremy J. Yang, Tudor I. Oprea:
DrugCentral 2023 extends human clinical data and integrates veterinary drugs. Nucleic Acids Res. 51(D1): 1276-1287 (2023) - Dávid Bajusz, Gáspár Pándy-Szekeres, Ágnes Takács, Elvin D. de araujo, György M. Keserü:
SH2db, an information system for the SH2 domain. Nucleic Acids Res. 51(W1): 542-552 (2023) - Anita E. Bandrowski, Mason Pairish, Peter Eckmann, Jeffrey S. Grethe, Maryann E. Martone:
The Antibody Registry: ten years of registering antibodies. Nucleic Acids Res. 51(D1): 358-367 (2023) - Chaohui Bao, Shan Wang, Lulu Jiang, Zhongcheng Fang, Kexin Zou, James Lin, Saijuan Chen, Hai Fang:
OpenXGR: a web-server update for genomic summary data interpretation. Nucleic Acids Res. 51(W1): 387-396 (2023) - Xiaoqiong Bao, Yin Zhang, Huiqin Li, Yuyan Teng, Lixia Ma, Zhihang Chen, Xiaotong Luo, Jian Zheng, An Zhao, Jian Ren, Zhixiang Zuo:
RM2Target: a comprehensive database for targets of writers, erasers and readers of RNA modifications. Nucleic Acids Res. 51(D1): 269-279 (2023) - Dominic J. Barker, Giuseppe Maccari, Xenia Georgiou, Michael A. Cooper, Paul Flicek, James Robinson, Steven G. E. Marsh:
The IPD-IMGT/HLA Database. Nucleic Acids Res. 51(D1): 1053-1060 (2023) - Kristian Barrett, Cameron J. Hunt, Lene Lange, Igor V. Grigoriev, Anne S. Meyer:
Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes. Nucleic Acids Res. 51(W1): 108-114 (2023) - Sushmita Basu, Jörg Gsponer, Lukasz A. Kurgan:
DEPICTER2: a comprehensive webserver for intrinsic disorder and disorder function prediction. Nucleic Acids Res. 51(W1): 141-147 (2023) - Tim Beck, Thomas Rowlands, Tom Shorter, Anthony J. Brookes:
GWAS Central: an expanding resource for finding and visualising genotype and phenotype data from genome-wide association studies. Nucleic Acids Res. 51(D1): 986-993 (2023) - Joshua S. Martin Beem, Sravani Venkatayogi, Barton F. Haynes, Kevin Wiehe:
ARMADiLLO: a web server for analyzing antibody mutation probabilities. Nucleic Acids Res. 51(W1): 51-56 (2023) - Danny Bergeron, Hermes Paraqindes, Étienne Fafard-Couture, Gabrielle Deschamps-Francoeur, Laurence Faucher-Giguère, Philia Bouchard-Bourelle, Sherif Abou Elela, Frédéric Catez, Virginie Marcel, Michelle S. Scott:
snoDB 2.0: an enhanced interactive database, specializing in human snoRNAs. Nucleic Acids Res. 51(D1): 291-296 (2023) - Kai Blin, Simon Shaw, Hannah E. Augustijn, Zachary L. Reitz, Friederike Biermann, Mohammad Alanjary, Artem Fetter, Barbara R. Terlouw, William W. Metcalf, Eric J. N. Helfrich, Gilles P. van Wezel, Marnix H. Medema, Tilmann Weber:
antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation. Nucleic Acids Res. 51(W1): 46-50 (2023) - Molly A. Bogue, Robyn L. Ball, Vivek M. Philip, David O. Walton, Matthew H. Dunn, Georgi Kolishovski, Anna Lamoureux, Matthew Gerring, Hongping Liang, Jake Emerson, Tim Stearns, Hao He, Gaurab Mukherjee, John Bluis, Sejal Desai, Beth A. Sundberg, Beena Kadakkuzha, Kunde Ramamoorthy Govindarajan, Elissa J. Chesler:
Mouse Phenome Database: towards a more FAIR-compliant and TRUST-worthy data repository and tool suite for phenotypes and genotypes. Nucleic Acids Res. 51(D1): 1067-1074 (2023) - Nathalie Bonin, Enrique Doster, Hannah Worley, Lee J. Pinnell, Jonathan E. Bravo, Peter Ferm, Simone Marini, Mattia Prosperi, Noelle R. Noyes, Paul S. Morley, Christina Boucher:
MEGARes and AMR++, v3.0: an updated comprehensive database of antimicrobial resistance determinants and an improved software pipeline for classification using high-throughput sequencing. Nucleic Acids Res. 51(D1): 744-752 (2023) - Alexandre Borrel, Mike Conway, Sue Nolte, Aswani Unnikrishnan, Charles Schmitt, Nicole C. Kleinstreuer:
ChemMaps.com v2.0: exploring the environmental chemical universe. Nucleic Acids Res. 51(W1): 78-82 (2023) - Sébastien Bourdon, Pauline Herviou, Leïla Dumas, Eliana Destefanis, Andrea Zen, Anne Cammas, Stefania Millevoi, Erik Dassi:
QUADRatlas: the RNA G-quadruplex and RG4-binding proteins database. Nucleic Acids Res. 51(D1): 240-247 (2023) - Louis Philip Benoit Bouvrette, Xiaofeng Wang, Jonathan Boulais, Jian Kong, Easin Uddin Syed, Steven M. Blue, Lijun Zhan, Sara Olson, Rebecca Stanton, Xintao Wei, Brian Yee, Eric L. Van nostrand, Xiang-Dong Fu, Christopher B. Burge, Brenton R. Graveley, Gene W. Yeo, Eric Lécuyer:
RBP Image Database: A resource for the systematic characterization of the subcellular distribution properties of human RNA binding proteins. Nucleic Acids Res. 51(D1): 1549-1557 (2023) - Michal Burdukiewicz, Dominik Rafacz, Agnieszka Barbach, Katarzyna Hubicka, Laura Bakala, Anna Lassota, Jakub Stecko, Natalia Szymanska, Jakub Wojciechowski, Dominika Kozakiewicz, Natalia Szulc, Jaroslaw Chilimoniuk, Izabela Jeskowiak, Marlena Gasior-Glogowska, Malgorzata Kotulska:
AmyloGraph: a comprehensive database of amyloid-amyloid interactions. Nucleic Acids Res. 51(D1): 352-357 (2023) - Josephine Burgin, Alisha Ahamed, Carla A. Cummins, Rajkumar Devraj, Khadim Gueye, Dipayan Gupta, Vikas Gupta, Muhammad Haseeb, Maira Ihsan, Eugene Ivanov, Suran Jayathilaka, Vishnukumar Balavenkataraman Kadhirvelu, Manish Kumar, Ankur Lathi, Rasko Leinonen, Milena Mansurova, Jasmine McKinnon, Colman O'Cathail, Joana Paupério, Stephane Pesant, Nadim Rahman, Gabriele Rinck, Sandeep Selvakumar, Swati Suman, Senthilnathan Vijayaraja, Zahra Waheed, Peter Woollard, David Yuan, Ahmad Zyoud, Tony Burdett, Guy Cochrane:
The European Nucleotide Archive in 2022. Nucleic Acids Res. 51(D1): 121-125 (2023) - Stephen K. Burley, Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich, Henry Chao, Li Chen, Paul A. Craig, Gregg V. Crichlow, Kenneth Dalenberg, Jose M. Duarte, Shuchismita Dutta, Maryam Fayazi, Zukang Feng, Justin W. Flatt, Sai Ganesan, Sutapa Ghosh, David S. Goodsell, Rachel Kramer Green, Vladimir Guranovic, Jeremy Henry, Brian P. Hudson, Igor Khokhriakov, Catherine L. Lawson, Yuhe Liang, Robert Lowe, Ezra Peisach, Irina Persikova, Dennis W. Piehl, Yana Rose, Andrej Sali, Joan Segura, Monica Sekharan, Chenghua Shao, Brinda Vallat, Maria Voigt, Ben M. Webb, John D. Westbrook, Shamara Whetstone, Jasmine Young, Arthur O. Zalevsky, Christine Zardecki:
RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning. Nucleic Acids Res. 51(D1): 488-508 (2023) - Yangyang Cai, Dezhong Lv, Donghao Li, Jiaqi Yin, Yingying Ma, Ya Luo, Limei Fu, Na Ding, Yongsheng Li, Zhenwei Pan, Xia Li, Juan Xu:
IEAtlas: an atlas of HLA-presented immune epitopes derived from non-coding regions. Nucleic Acids Res. 51(D1): 409-417 (2023) - Antonio Pedro Camargo, Stephen Nayfach, I-Min A. Chen, Krishnaveni Palaniappan, Anna Ratner, Ken Chu, Stephan Ritter, T. B. K. Reddy, Supratim Mukherjee, Frederik Schulz, Lee Call, Russell Y. Neches, Tanja Woyke, Natalia N. Ivanova, Emiley A. Eloe-Fadrosh, Nikos Kyrpides, Simon Roux:
IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata. Nucleic Acids Res. 51(D1): 733-743 (2023)
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