• case-insensitive prefix search: default
  e.g., sig matches "SIGIR" as well as "signal"
• exact word search: append dollar sign ($) to word
  e.g., graph$ matches "graph", but not "graphics"
• boolean and: separate words by space
  e.g., codd model
• boolean or: connect words by pipe symbol (|)
  e.g., graph|network

Update May 7, 2017: Please note that we had to disable the phrase search operator (.) and the boolean not operator (-) due to technical problems. For the time being, phrase search queries will yield regular prefix search result, and search terms preceded by a minus will be interpreted as regular (positive) search terms.

found 881 matches

• 2022
• 
  Brennan Abanades, Guy Georges, Alexander Bujotzek, Charlotte M. Deane:
  ABlooper: fast accurate antibody CDR loop structure prediction with accuracy estimation. Bioinform. 38(7): 1877-1880 (2022)
• 
  Walid M. Abdelmoula, Sylwia Stopka, Elizabeth C. Randall, Michael Regan, Jeffrey N. Agar, Jann N. Sarkaria, William M. Wells III, Tina Kapur, Nathalie Y. R. Agar:
  massNet: integrated processing and classification of spatially resolved mass spectrometry data using deep learning for rapid tumor delineation. Bioinform. 38(7): 2015-2021 (2022)
• 
  Jonathan S. Abebe, Alexander M. Price, Katharina E. Hayer, Ian Mohr, Matthew D. Weitzman, Angus C. Wilson, Daniel P. Depledge:
  DRUMMER - rapid detection of RNA modifications through comparative nanopore sequencing. Bioinform. 38(11): 3113-3115 (2022)
• 
  Satwik Acharyya, Xiang Zhou, Veerabhadran Baladandayuthapani:
  SpaceX: gene co-expression network estimation for spatial transcriptomics. Bioinform. 38(22): 5033-5041 (2022)
• 
  Bartosz Adamczyk, Maciej Antczak, Marta Szachniuk:
  RNAsolo: a repository of cleaned PDB-derived RNA 3D structures. Bioinform. 38(14): 3668-3670 (2022)
• 
  Tim Adams, Marcin Namysl, Alpha Tom Kodamullil, Sven Behnke, Marc Jacobs:
  Benchmarking table recognition performance on biomedical literature on neurological disorders. Bioinform. 38(6): 1624-1630 (2022)
• 
  Eran Agmon, Ryan K. Spangler, Christopher J. Skalnik, William Poole, Shayn M. Peirce, Jerry H. Morrison, Markus W. Covert:
  Vivarium: an interface and engine for integrative multiscale modeling in computational biology. Bioinform. 38(7): 1972-1979 (2022)
• 
  Marina Ainciburu, Duncan M. Morgan, Erica A. K. Depasquale, J. Christopher Love, Felipe Prósper, Peter van Galen:
  WAT3R: recovery of T-cell receptor variable regions from 3′ single-cell RNA-sequencing. Bioinform. 38(14): 3645-3647 (2022)
• 
  Mete Akgün, Nico Pfeifer, Oliver Kohlbacher:
  Efficient privacy-preserving whole-genome variant queries. Bioinform. 38(8): 2202-2210 (2022)
• 
  Bader F. Al-Anzi, Mohammad Khajah, Saja A. Fakhraldeen:
  Predicting and explaining the impact of genetic disruptions and interactions on organismal viability. Bioinform. 38(17): 4088-4099 (2022)
• 
  Abbas Alameer, Davide Chicco:
  geoCancerPrognosticDatasetsRetriever: a bioinformatics tool to easily identify cancer prognostic datasets on Gene Expression Omnibus (GEO). Bioinform. 38(6): 1761-1763 (2022)
• 
  María Isabel Alcoriza-Balaguer, Juan Carlos García-Cañaveras, Francisco Javier Ripoll-Esteve, Marta Roca, Agustín Lahoz:
  LipidMS 3.0: an R-package and a web-based tool for LC-MS/MS data processing and lipid annotation. Bioinform. 38(20): 4826-4828 (2022)
• 
  Hayda Almeida, Adrian Tsang, Abdoulaye Baniré Diallo:
  Improving candidate Biosynthetic Gene Clusters in fungi through reinforcement learning. Bioinform. 38(16): 3984-3991 (2022)
• 
  Fatemeh Almodaresi, Jamshed Khan, Sergey Madaminov, Michael Ferdman, Rob Johnson, Prashant Pandey, Rob Patro:
  An incrementally updatable and scalable system for large-scale sequence search using the Bentley-Saxe transformation. Bioinform. 38(12): 3155-3163 (2022)
• 
  Azza Althagafi, Lamia Alsubaie, Nagarajan Kathiresan, Katsuhiko Mineta, Taghrid Aloraini, Fuad Al Mutairi, Majid Alfadhel, Takashi Gojobori, Ahmad Alfares, Robert Hoehndorf:
  DeepSVP: integration of genotype and phenotype for structural variant prioritization using deep learning. Bioinform. 38(6): 1677-1684 (2022)
• 
  Maneesha Aluru, Harsh Shrivastava, Sriram P. Chockalingam, Shruti Shivakumar, Srinivas Aluru:
  EnGRaiN: a supervised ensemble learning method for recovery of large-scale gene regulatory networks. Bioinform. 38(5): 1312-1319 (2022)
• 
  Elise Amblard, Jonathan Bac, Alexander Chervov, Vassili Soumelis, Andrei Yu. Zinovyev:
  Hubness reduction improves clustering and trajectory inference in single-cell transcriptomic data. Bioinform. 38(4): 1045-1051 (2022)
• 
  Mohamed Amgad, Lamees A. Atteya, Hagar Hussein, Kareem Hosny Mohammed, Ehab Hafiz, Maha A. T. Elsebaie, Pooya Mobadersany, David Manthey, David A. Gutman, Habiba Elfandy, Lee A. D. Cooper:
  Explainable nucleus classification using Decision Tree Approximation of Learned Embeddings. Bioinform. 38(2): 513-519 (2022)
• 
  Ali Amiryousefi, Bernardo Williams, Mohieddin Jafari, Jing Tang:
  The ENDS of assumptions: an online tool for the epistemic non-parametric drug-response scoring. Bioinform. 38(11): 3132-3133 (2022)
• 
  Fabrizio Angaroni, Kevin Chen, Chiara Damiani, Giulio Caravagna, Alex Graudenzi, Daniele Ramazzotti:
  PMCE: efficient inference of expressive models of cancer evolution with high prognostic power. Bioinform. 38(3): 754-762 (2022)
• 
  Federico Ansaloni, Nicolò Gualandi, Mauro Esposito, Stefano Gustincich, Remo Sanges:
  TEspeX: consensus-specific quantification of transposable element expression preventing biases from exonized fragments. Bioinform. 38(18): 4430-4433 (2022)
• 
  Christian Anthon, Giulia Ilaria Corsi, Jan Gorodkin:
  CRISPRon/off: CRISPR/Cas9 on- and off-target gRNA design. Bioinform. 38(24): 5437-5439 (2022)
• 
  Ariel A. Aptekmann, J. Buongiorno, D. Giovannelli, M. Glamoclija, Diego U. Ferreiro, Yana Bromberg:
  mebipred: identifying metal-binding potential in protein sequence. Bioinform. 38(14): 3532-3540 (2022)
• 
  Layla Aref, Lisa Bastarache, Jacob J. Hughey:
  The phers R package: using phenotype risk scores based on electronic health records to study Mendelian disease and rare genetic variants. Bioinform. 38(21): 4972-4974 (2022)
• 
  Lyla Atta, Arpan Sahoo, Jean Fan:
  VeloViz: RNA velocity-informed embeddings for visualizing cellular trajectories. Bioinform. 38(2): 391-396 (2022)
• 
  Marzieh Ayati, Serhan Yilmaz, Mark R. Chance, Mehmet Koyutürk:
  Functional characterization of co-phosphorylation networks. Bioinform. 38(15): 3785-3793 (2022)
• 
  Aleksandra E. Badaczewska-Dawid, Javier Garcia-Pardo, Aleksander Kuriata, Jordi Pujols, Salvador Ventura, Sebastian Kmiecik:
  A3D database: structure-based predictions of protein aggregation for the human proteome. Bioinform. 38(11): 3121-3123 (2022)
• 
  Yang Bai, Yang Li, Yu Shen, Mingyu Yang, Wentao Zhang, Bin Cui:
  AutoDC: an automatic machine learning framework for disease classification. Bioinform. 38(13): 3415-3421 (2022)
• 
  Tian Bai, Jiayu Xu, Zhenting Zhang, Shuyu Guo, Xiao Luo:
  Context-aware learning for cancer cell nucleus recognition in pathology images. Bioinform. 38(10): 2892-2898 (2022)
• 
  Zeheng Bai, Yao-zhong Zhang, Satoru Miyano, Rui Yamaguchi, Kosuke Fujimoto, Satoshi Uematsu, Seiya Imoto:
  Identification of bacteriophage genome sequences with representation learning. Bioinform. 38(18): 4264-4270 (2022)

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