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Publication search results
found 22 matches
- 2024
- Shayesteh Arasti, Siavash Mirarab:
Median quartet tree search algorithms using optimal subtree prune and regraft. Algorithms Mol. Biol. 19(1): 12 (2024) - Leonard Bohnenkämper:
Recombinations, chains and caps: resolving problems with the DCJ-indel model. Algorithms Mol. Biol. 19(1): 8 (2024) - Marília D. V. Braga, Leonie R. Brockmann, Katharina Klerx, Jens Stoye:
Investigating the complexity of the double distance problems. Algorithms Mol. Biol. 19(1): 1 (2024) - Stefan Canzar, Van Hoan Do, Slobodan Jelic, Sören Laue, Domagoj Matijevic, Tomislav Prusina:
Metric multidimensional scaling for large single-cell datasets using neural networks. Algorithms Mol. Biol. 19(1): 21 (2024) - Junyan Dai, Tobias Rubel, Yunheng Han, Erin K. Molloy:
Dollo-CDP: a polynomial-time algorithm for the clade-constrained large Dollo parsimony problem. Algorithms Mol. Biol. 19(1): 2 (2024) - Diego Díaz-Domínguez, Miika Leinonen, Leena Salmela:
Space-efficient computation of k-mer dictionaries for large values of k. Algorithms Mol. Biol. 19(1): 14 (2024) - Victor Epain, Rumen Andonov:
Global exact optimisations for chloroplast structural haplotype scaffolding. Algorithms Mol. Biol. 19(1): 5 (2024) - Jason Fan, Jamshed Khan, Noor Pratap Singh, Giulio Ermanno Pibiri, Rob Patro:
Fulgor: a fast and compact k-mer index for large-scale matching and color queries. Algorithms Mol. Biol. 19(1): 3 (2024) - Mahsa Farnia, Nadia Tahiri:
New generalized metric based on branch length distance to compare B cell lineage trees. Algorithms Mol. Biol. 19(1): 22 (2024) - Pawel Górecki, Natalia Rutecka, Agnieszka Mykowiecka, Jaroslaw Paszek:
Unifying duplication episode clustering and gene-species mapping inference. Algorithms Mol. Biol. 19(1): 7 (2024) - Mateo Gray, Sebastian Will, Hosna Jabbari:
SparseRNAfolD: optimized sparse RNA pseudoknot-free folding with dangle consideration. Algorithms Mol. Biol. 19(1): 9 (2024) - Aaron Hong, Marco Oliva, Dominik Köppl, Hideo Bannai, Christina Boucher, Travis Gagie:
Pfp-fm: an accelerated FM-index. Algorithms Mol. Biol. 19(1): 15 (2024) - Jamshed Khan, Tobias Rubel, Erin K. Molloy, Laxman Dhulipala, Rob Patro:
Fast, parallel, and cache-friendly suffix array construction. Algorithms Mol. Biol. 19(1): 16 (2024) - Zsuzsanna Lipták, Francesco Masillo, Simon J. Puglisi:
Suffix sorting via matching statistics. Algorithms Mol. Biol. 19(1): 11 (2024) - Yushu Liu, Mohammad Amin Edrisi, Zhi Yan, Huw A. Ogilvie, Luay Nakhleh:
NestedBD: Bayesian inference of phylogenetic trees from single-cell copy number profiles under a birth-death model. Algorithms Mol. Biol. 19(1): 18 (2024) - Yutong Qiu, Yihang Shen, Carl Kingsford:
Revisiting the complexity of and algorithms for the graph traversal edit distance and its variants. Algorithms Mol. Biol. 19(1): 17 (2024) - Amatur Rahman, Yoann Dufresne, Paul Medvedev:
Compression algorithm for colored de Bruijn graphs. Algorithms Mol. Biol. 19(1): 20 (2024) - Jyotshna Rajput, Ghanshyam Chandra, Chirag Jain:
Co-linear chaining on pangenome graphs. Algorithms Mol. Biol. 19(1): 4 (2024) - Nicola Rizzo, Manuel Cáceres, Veli Mäkinen:
Finding maximal exact matches in graphs. Algorithms Mol. Biol. 19(1): 10 (2024) - Alitzel López Sánchez, Manuel Lafond:
Predicting horizontal gene transfers with perfect transfer networks. Algorithms Mol. Biol. 19(1): 6 (2024) - Tizian Schulz, Paul Medvedev:
ESKEMAP: exact sketch-based read mapping. Algorithms Mol. Biol. 19(1): 19 (2024) - Hua-Ting Yao, Bertrand Marchand, Sarah J. Berkemer, Yann Ponty, Sebastian Will:
Infrared: a declarative tree decomposition-powered framework for bioinformatics. Algorithms Mol. Biol. 19(1): 13 (2024)
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