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ORCIDErin K. Molloy
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2020 – today
- 2024
[j18]Junyan Dai, Tobias Rubel, Yunheng Han, Erin K. Molloy
:
Dollo-CDP: a polynomial-time algorithm for the clade-constrained large Dollo parsimony problem. Algorithms Mol. Biol. 19(1): 2 (2024)- [j17]Jamshed Khan, Tobias Rubel, Erin K. Molloy, Laxman Dhulipala, Rob Patro:
Fast, parallel, and cache-friendly suffix array construction. Algorithms Mol. Biol. 19(1): 16 (2024) - 2023
- [j16]Yunheng Han, Erin K. Molloy:
Quartets enable statistically consistent estimation of cell lineage trees under an unbiased error and missingness model. Algorithms Mol. Biol. 18(1): 19 (2023) - [c9]Junyan Dai, Tobias Rubel, Yunheng Han, Erin K. Molloy:
Leveraging Constraints Plus Dynamic Programming for the Large Dollo Parsimony Problem. WABI 2023: 5:1-5:23 - [c8]Yunheng Han, Erin K. Molloy:
Quartets Enable Statistically Consistent Estimation of Cell Lineage Trees Under an Unbiased Error and Missingness Model (Abstract). WABI 2023: 8:1-8:2 - [c7]Jamshed Khan, Tobias Rubel, Laxman Dhulipala, Erin K. Molloy, Rob Patro:
Fast, Parallel, and Cache-Friendly Suffix Array Construction. WABI 2023: 16:1-16:21 - 2021
- [j15]Xilin Yu, Thien Le, Sarah A. Christensen, Erin K. Molloy, Tandy J. Warnow:
Using Robinson-Foulds supertrees in divide-and-conquer phylogeny estimation. Algorithms Mol. Biol. 16(1): 12 (2021) - [j14]Nidhi Shah, Erin K. Molloy, Mihai Pop, Tandy J. Warnow:
TIPP2: metagenomic taxonomic profiling using phylogenetic markers. Bioinform. 37(13): 1839-1845 (2021) - [j13]Erin K. Molloy, Arun Durvasula, Sriram Sankararaman:
Advancing admixture graph estimation via maximum likelihood network orientation. Bioinform. 37(Supplement): 142-150 (2021) - [j12]Brandon Legried, Erin K. Molloy, Tandy J. Warnow, Sébastien Roch:
Polynomial-Time Statistical Estimation of Species Trees Under Gene Duplication and Loss. J. Comput. Biol. 28(5): 452-468 (2021) - [j11]Thien Le, Aaron Sy, Erin K. Molloy, Qiuyi Zhang, Satish Rao, Tandy J. Warnow:
Using Constrained-INC for Large-Scale Gene Tree and Species Tree Estimation. IEEE ACM Trans. Comput. Biol. Bioinform. 18(1): 2-15 (2021) - 2020
- [b1]Erin K. Molloy:
Supertree-like methods for genome-scale species tree estimation. University of Illinois Urbana-Champaign, USA, 2020 - [j10]Sarah A. Christensen, Erin K. Molloy, Pranjal Vachaspati, Ananya Yammanuru, Tandy J. Warnow:
Non-parametric correction of estimated gene trees using TRACTION. Algorithms Mol. Biol. 15(1): 1 (2020) - [j9]Erin K. Molloy, Tandy J. Warnow:
FastMulRFS: fast and accurate species tree estimation under generic gene duplication and loss models. Bioinform. 36(Supplement-1): i57-i65 (2020) - [c6]Brandon Legried, Erin K. Molloy, Tandy J. Warnow, Sébastien Roch:
Polynomial-Time Statistical Estimation of Species Trees Under Gene Duplication and Loss. RECOMB 2020: 120-135 - [c5]Xilin Yu, Thien Le, Sarah A. Christensen, Erin K. Molloy, Tandy J. Warnow:
Advancing Divide-And-Conquer Phylogeny Estimation Using Robinson-Foulds Supertrees. WABI 2020: 15:1-15:17
2010 – 2019
- 2019
- [j8]Erin K. Molloy, Tandy J. Warnow:
Statistically consistent divide-and-conquer pipelines for phylogeny estimation using NJMerge. Algorithms Mol. Biol. 14(1): 14:1-14:17 (2019) - [j7]Erin K. Molloy, Tandy J. Warnow:
TreeMerge: a new method for improving the scalability of species tree estimation methods. Bioinform. 35(14): i417-i426 (2019) - [c4]Thien Le, Aaron Sy, Erin K. Molloy, Qiuyi (Richard) Zhang, Satish Rao, Tandy J. Warnow:
Using INC Within Divide-and-Conquer Phylogeny Estimation. AlCoB 2019: 167-178 - [c3]Sarah A. Christensen, Erin K. Molloy, Pranjal Vachaspati, Tandy J. Warnow:
TRACTION: Fast Non-Parametric Improvement of Estimated Gene Trees. WABI 2019: 4:1-4:16 - 2018
- [j6]Sarah A. Christensen, Erin K. Molloy, Pranjal Vachaspati, Tandy J. Warnow:
OCTAL: Optimal Completion of gene trees in polynomial time. Algorithms Mol. Biol. 13(1): 6:1-6:18 (2018) - [c2]Erin K. Molloy, Tandy J. Warnow:
NJMerge: A Generic Technique for Scaling Phylogeny Estimation Methods and Its Application to Species Trees. RECOMB-CG 2018: 260-276 - 2017
- [c1]Sarah A. Christensen, Erin K. Molloy, Pranjal Vachaspati, Tandy J. Warnow:
Optimal Completion of Incomplete Gene Trees in Polynomial Time Using OCTAL. WABI 2017: 27:1-27:14 - 2015
- [j5]Rémi Patriat, Erin K. Molloy, Rasmus M. Birn:
Using Edge Voxel Information to Improve Motion Regression for rs-fMRI Connectivity Studies. Brain Connect. 5(9): 582-595 (2015) - 2014
- [j4]Rasmus M. Birn, Maria Daniela Cornejo, Erin K. Molloy, Rémi Patriat, Timothy B. Meier, Gregory R. Kirk, Veena A. Nair, Mary Elizabeth Meyerand, Vivek Prabhakaran:
The Influence of Physiological Noise Correction on Test-Retest Reliability of Resting-State Functional Connectivity. Brain Connect. 4(7): 511-522 (2014) - [j3]Erin K. Molloy, Mary E. Meyerand, Rasmus M. Birn:
The influence of spatial resolution and smoothing on the detectability of resting-state and task fMRI. NeuroImage 86: 221-230 (2014) - 2013
- [j2]Rémi Patriat, Erin K. Molloy, Timothy B. Meier, Gregory R. Kirk, Veena A. Nair, Mary E. Meyerand, Vivek Prabhakaran, Rasmus M. Birn:
The effect of resting condition on resting-state fMRI reliability and consistency: A comparison between resting with eyes open, closed, and fixated. NeuroImage 78: 463-473 (2013) - [j1]Rasmus M. Birn, Erin K. Molloy, Rémi Patriat, Taurean Parker, Timothy B. Meier, Gregory R. Kirk, Veena A. Nair, Mary Elizabeth Meyerand, Vivek Prabhakaran:
The effect of scan length on the reliability of resting-state fMRI connectivity estimates. NeuroImage 83: 550-558 (2013)
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