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Publication search results
found 730 matches
- 2024
- Md. Hasin Abrar, Paul Medvedev:
PLA-index: A k-mer Index Exploiting Rank Curve Linearity. WABI 2024: 13:1-13:18 - Rocco Ascone, Giulia Bernardini, Alessio Conte, Massimo Equi, Estéban Gabory, Roberto Grossi, Nadia Pisanti:
A Unifying Taxonomy of Pattern Matching in Degenerate Strings and Founder Graphs. WABI 2024: 14:1-14:21 - Kimon Boehmer, Sarah J. Berkemer, Sebastian Will, Yann Ponty:
RNA Triplet Repeats: Improved Algorithms for Structure Prediction and Interactions. WABI 2024: 18:1-18:23 - Leonard Bohnenkämper, Jens Stoye, Daniel Dörr:
Reconstructing Rearrangement Phylogenies of Natural Genomes. WABI 2024: 12:1-12:16 - Théo Boury, Laurent Bulteau, Yann Ponty:
RNA Inverse Folding Can Be Solved in Linear Time for Structures Without Isolated Stacks or Base Pairs. WABI 2024: 19:1-19:23 - Giovanni Buzzega, Alessio Conte, Roberto Grossi, Giulia Punzi:
McDag: Indexing Maximal Common Subsequences in Practice. WABI 2024: 21:1-21:18 - Yao-ban Chan:
An Efficient Algorithm for the Reconciliation of a Gene Network and Species Tree. WABI 2024: 3:1-3:17 - Adam Cicherski, Anna Lisiecka, Norbert Dojer:
AlfaPang: Alignment Free Algorithm for Pangenome Graph Construction. WABI 2024: 23:1-23:18 - Luís Cunha, Ignasi Sau, Uéverton S. Souza:
On the Complexity of the Median and Closest Permutation Problems. WABI 2024: 2:1-2:23 - Lore Depuydt, Luca Renders, Simon Van de Vyver, Lennart Veys, Travis Gagie, Jan Fostier:
b-move: Faster Bidirectional Character Extensions in a Run-Length Compressed Index. WABI 2024: 10:1-10:18 - Mahmudur Rahman Hera, David Koslicki:
Cosine Similarity Estimation Using FracMinHash: Theoretical Analysis, Safety Conditions, and Implementation. WABI 2024: 6:1-6:16 - Lukas Hübner, Alexandros Stamatakis:
Memoization on Shared Subtrees Accelerates Computations on Genealogical Forests. WABI 2024: 5:1-5:22 - Stephen Hwang, Nathaniel K. Brown, Omar Ahmed, Katharine M. Jenike, Sam Kovaka, Michael C. Schatz, Ben Langmead:
MEM-Based Pangenome Indexing for k-mer Queries. WABI 2024: 4:1-4:17 - Ragnar Groot Koerkamp:
A*PA2: Up to 19× Faster Exact Global Alignment. WABI 2024: 17:1-17:25 - Ragnar Groot Koerkamp, Giulio Ermanno Pibiri:
The {mod-minimizer}: A Simple and Efficient Sampling Algorithm for Long k-Mers. WABI 2024: 11:1-11:23 - Bertrand Marchand, Nadia Tahiri, Olivier Tremblay Savard, Manuel Lafond:
Finding Maximum Common Contractions Between Phylogenetic Networks. WABI 2024: 16:1-16:24 - Yuanyuan Qi, Mohammed El-Kebir:
Sapling: Inferring and Summarizing Tumor Phylogenies from Bulk Data Using Backbone Trees. WABI 2024: 7:1-7:19 - Alitzel López Sánchez, José Antonio Ramírez-Rafael, Alejandro Flores-Lamas, Maribel Hernández-Rosales, Manuel Lafond:
The Path-Label Reconciliation (PLR) Dissimilarity Measure for Gene Trees. WABI 2024: 20:1-20:21 - Sebastian S. Schmidt, Santeri Toivonen, Paul Medvedev, Alexandru I. Tomescu:
Applying the Safe-And-Complete Framework to Practical Genome Assembly. WABI 2024: 8:1-8:16 - Tsuyoshi Urata, Manato Yokoyama, Momoko Hayamizu:
Orientability of Undirected Phylogenetic Networks to a Desired Class: Practical Algorithms and Application to Tree-Child Orientation. WABI 2024: 9:1-9:17 - Tomás Vinar:
Bioinformatics of Pathogens (Invited Talk). WABI 2024: 1:1-1:2 - Front Matter, Table of Contents, Preface, Conference Organization. WABI 2024: 0:i-0:xii
- Xiaofei Carl Zang, Xiang Li, Kyle Metcalfe, Tuval Ben-Yehezkel, Ryan Kelley, Mingfu Shao:
Anchorage Accurately Assembles Anchor-Flanked Synthetic Long Reads. WABI 2024: 22:1-22:17 - Jens Zentgraf, Sven Rahmann:
Swiftly Identifying Strongly Unique k-Mers. WABI 2024: 15:1-15:15 - Solon P. Pissis
, Wing-Kin Sung
:
24th International Workshop on Algorithms in Bioinformatics, WABI 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom. LIPIcs 312, Schloss Dagstuhl - Leibniz-Zentrum für Informatik 2024, ISBN 978-3-95977-340-9 [contents] - 2023
- Nicola Rizzo
, Manuel Cáceres, Veli Mäkinen
:
Finding Maximal Exact Matches in Graphs. WABI 2023: 10:1-10:17 - Pawel Górecki, Natalia Rutecka, Agnieszka Mykowiecka, Jaroslaw Paszek:
Simultaneous Reconstruction of Duplication Episodes and Gene-Species Mappings. WABI 2023: 6:1-6:18 - Shayesteh Arasti, Siavash Mirarab:
Optimal Subtree Prune and Regraft for Quartet Score in Sub-Quadratic Time. WABI 2023: 4:1-4:20 - Leonard Bohnenkämper
:
Bridging Disparate Views on the DCJ-Indel Model for a Capping-Free Solution to the Natural Distance Problem. WABI 2023: 22:1-22:18 - Théo Boury, Yann Ponty, Vladimir Reinharz:
Automatic Exploration of the Natural Variability of RNA Non-Canonical Geometric Patterns with a Parameterized Sampling Technique. WABI 2023: 20:1-20:22
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