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@inproceedings{DBLP:conf/wabi/AbrarM24, author = {Md. Hasin Abrar and Paul Medvedev}, editor = {Solon P. Pissis and Wing{-}Kin Sung}, title = {PLA-index: {A} k-mer Index Exploiting Rank Curve Linearity}, booktitle = {24th International Workshop on Algorithms in Bioinformatics, {WABI} 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom}, series = {LIPIcs}, volume = {312}, pages = {13:1--13:18}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2024}, url = {https://doi.org/10.4230/LIPIcs.WABI.2024.13}, doi = {10.4230/LIPICS.WABI.2024.13}, timestamp = {Mon, 26 Aug 2024 16:40:52 +0200}, biburl = {https://dblp.org/rec/conf/wabi/AbrarM24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Ascone0CEGGP24, author = {Rocco Ascone and Giulia Bernardini and Alessio Conte and Massimo Equi and Est{\'{e}}ban Gabory and Roberto Grossi and Nadia Pisanti}, editor = {Solon P. Pissis and Wing{-}Kin Sung}, title = {A Unifying Taxonomy of Pattern Matching in Degenerate Strings and Founder Graphs}, booktitle = {24th International Workshop on Algorithms in Bioinformatics, {WABI} 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom}, series = {LIPIcs}, volume = {312}, pages = {14:1--14:21}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2024}, url = {https://doi.org/10.4230/LIPIcs.WABI.2024.14}, doi = {10.4230/LIPICS.WABI.2024.14}, timestamp = {Mon, 26 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Ascone0CEGGP24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BoehmerBWP24, author = {Kimon Boehmer and Sarah J. Berkemer and Sebastian Will and Yann Ponty}, editor = {Solon P. Pissis and Wing{-}Kin Sung}, title = {{RNA} Triplet Repeats: Improved Algorithms for Structure Prediction and Interactions}, booktitle = {24th International Workshop on Algorithms in Bioinformatics, {WABI} 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom}, series = {LIPIcs}, volume = {312}, pages = {18:1--18:23}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2024}, url = {https://doi.org/10.4230/LIPIcs.WABI.2024.18}, doi = {10.4230/LIPICS.WABI.2024.18}, timestamp = {Mon, 26 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BoehmerBWP24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BohnenkamperSD24, author = {Leonard Bohnenk{\"{a}}mper and Jens Stoye and Daniel D{\"{o}}rr}, editor = {Solon P. Pissis and Wing{-}Kin Sung}, title = {Reconstructing Rearrangement Phylogenies of Natural Genomes}, booktitle = {24th International Workshop on Algorithms in Bioinformatics, {WABI} 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom}, series = {LIPIcs}, volume = {312}, pages = {12:1--12:16}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2024}, url = {https://doi.org/10.4230/LIPIcs.WABI.2024.12}, doi = {10.4230/LIPICS.WABI.2024.12}, timestamp = {Sun, 06 Oct 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BohnenkamperSD24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BouryBP24, author = {Th{\'{e}}o Boury and Laurent Bulteau and Yann Ponty}, editor = {Solon P. Pissis and Wing{-}Kin Sung}, title = {{RNA} Inverse Folding Can Be Solved in Linear Time for Structures Without Isolated Stacks or Base Pairs}, booktitle = {24th International Workshop on Algorithms in Bioinformatics, {WABI} 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom}, series = {LIPIcs}, volume = {312}, pages = {19:1--19:23}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2024}, url = {https://doi.org/10.4230/LIPIcs.WABI.2024.19}, doi = {10.4230/LIPICS.WABI.2024.19}, timestamp = {Sun, 06 Oct 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BouryBP24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BuzzegaCGP24, author = {Giovanni Buzzega and Alessio Conte and Roberto Grossi and Giulia Punzi}, editor = {Solon P. Pissis and Wing{-}Kin Sung}, title = {McDag: Indexing Maximal Common Subsequences in Practice}, booktitle = {24th International Workshop on Algorithms in Bioinformatics, {WABI} 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom}, series = {LIPIcs}, volume = {312}, pages = {21:1--21:18}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2024}, url = {https://doi.org/10.4230/LIPIcs.WABI.2024.21}, doi = {10.4230/LIPICS.WABI.2024.21}, timestamp = {Mon, 26 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BuzzegaCGP24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Chan24, author = {Yao{-}ban Chan}, editor = {Solon P. Pissis and Wing{-}Kin Sung}, title = {An Efficient Algorithm for the Reconciliation of a Gene Network and Species Tree}, booktitle = {24th International Workshop on Algorithms in Bioinformatics, {WABI} 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom}, series = {LIPIcs}, volume = {312}, pages = {3:1--3:17}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2024}, url = {https://doi.org/10.4230/LIPIcs.WABI.2024.3}, doi = {10.4230/LIPICS.WABI.2024.3}, timestamp = {Mon, 26 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Chan24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/CicherskiLD24, author = {Adam Cicherski and Anna Lisiecka and Norbert Dojer}, editor = {Solon P. Pissis and Wing{-}Kin Sung}, title = {AlfaPang: Alignment Free Algorithm for Pangenome Graph Construction}, booktitle = {24th International Workshop on Algorithms in Bioinformatics, {WABI} 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom}, series = {LIPIcs}, volume = {312}, pages = {23:1--23:18}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2024}, url = {https://doi.org/10.4230/LIPIcs.WABI.2024.23}, doi = {10.4230/LIPICS.WABI.2024.23}, timestamp = {Sun, 06 Oct 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/CicherskiLD24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/CunhaSS24, author = {Lu{\'{\i}}s Cunha and Ignasi Sau and U{\'{e}}verton S. Souza}, editor = {Solon P. Pissis and Wing{-}Kin Sung}, title = {On the Complexity of the Median and Closest Permutation Problems}, booktitle = {24th International Workshop on Algorithms in Bioinformatics, {WABI} 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom}, series = {LIPIcs}, volume = {312}, pages = {2:1--2:23}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2024}, url = {https://doi.org/10.4230/LIPIcs.WABI.2024.2}, doi = {10.4230/LIPICS.WABI.2024.2}, timestamp = {Mon, 26 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/CunhaSS24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DepuydtRVVGF24, author = {Lore Depuydt and Luca Renders and Simon Van de Vyver and Lennart Veys and Travis Gagie and Jan Fostier}, editor = {Solon P. Pissis and Wing{-}Kin Sung}, title = {b-move: Faster Bidirectional Character Extensions in a Run-Length Compressed Index}, booktitle = {24th International Workshop on Algorithms in Bioinformatics, {WABI} 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom}, series = {LIPIcs}, volume = {312}, pages = {10:1--10:18}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2024}, url = {https://doi.org/10.4230/LIPIcs.WABI.2024.10}, doi = {10.4230/LIPICS.WABI.2024.10}, timestamp = {Mon, 26 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DepuydtRVVGF24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HeraK24, author = {Mahmudur Rahman Hera and David Koslicki}, editor = {Solon P. Pissis and Wing{-}Kin Sung}, title = {Cosine Similarity Estimation Using FracMinHash: Theoretical Analysis, Safety Conditions, and Implementation}, booktitle = {24th International Workshop on Algorithms in Bioinformatics, {WABI} 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom}, series = {LIPIcs}, volume = {312}, pages = {6:1--6:16}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2024}, url = {https://doi.org/10.4230/LIPIcs.WABI.2024.6}, doi = {10.4230/LIPICS.WABI.2024.6}, timestamp = {Mon, 26 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HeraK24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HubnerS24, author = {Lukas H{\"{u}}bner and Alexandros Stamatakis}, editor = {Solon P. Pissis and Wing{-}Kin Sung}, title = {Memoization on Shared Subtrees Accelerates Computations on Genealogical Forests}, booktitle = {24th International Workshop on Algorithms in Bioinformatics, {WABI} 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom}, series = {LIPIcs}, volume = {312}, pages = {5:1--5:22}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2024}, url = {https://doi.org/10.4230/LIPIcs.WABI.2024.5}, doi = {10.4230/LIPICS.WABI.2024.5}, timestamp = {Mon, 26 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HubnerS24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HwangBAJKSL24, author = {Stephen Hwang and Nathaniel K. Brown and Omar Ahmed and Katharine M. Jenike and Sam Kovaka and Michael C. Schatz and Ben Langmead}, editor = {Solon P. Pissis and Wing{-}Kin Sung}, title = {MEM-Based Pangenome Indexing for k-mer Queries}, booktitle = {24th International Workshop on Algorithms in Bioinformatics, {WABI} 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom}, series = {LIPIcs}, volume = {312}, pages = {4:1--4:17}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2024}, url = {https://doi.org/10.4230/LIPIcs.WABI.2024.4}, doi = {10.4230/LIPICS.WABI.2024.4}, timestamp = {Mon, 26 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HwangBAJKSL24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Koerkamp24, author = {Ragnar {Groot Koerkamp}}, editor = {Solon P. Pissis and Wing{-}Kin Sung}, title = {A*PA2: Up to 19{\texttimes} Faster Exact Global Alignment}, booktitle = {24th International Workshop on Algorithms in Bioinformatics, {WABI} 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom}, series = {LIPIcs}, volume = {312}, pages = {17:1--17:25}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2024}, url = {https://doi.org/10.4230/LIPIcs.WABI.2024.17}, doi = {10.4230/LIPICS.WABI.2024.17}, timestamp = {Mon, 26 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Koerkamp24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KoerkampP24, author = {Ragnar {Groot Koerkamp} and Giulio Ermanno Pibiri}, editor = {Solon P. Pissis and Wing{-}Kin Sung}, title = {The \{mod-minimizer\}: {A} Simple and Efficient Sampling Algorithm for Long k-Mers}, booktitle = {24th International Workshop on Algorithms in Bioinformatics, {WABI} 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom}, series = {LIPIcs}, volume = {312}, pages = {11:1--11:23}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2024}, url = {https://doi.org/10.4230/LIPIcs.WABI.2024.11}, doi = {10.4230/LIPICS.WABI.2024.11}, timestamp = {Mon, 26 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/KoerkampP24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MarchandTSL24, author = {Bertrand Marchand and Nadia Tahiri and Olivier Tremblay Savard and Manuel Lafond}, editor = {Solon P. Pissis and Wing{-}Kin Sung}, title = {Finding Maximum Common Contractions Between Phylogenetic Networks}, booktitle = {24th International Workshop on Algorithms in Bioinformatics, {WABI} 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom}, series = {LIPIcs}, volume = {312}, pages = {16:1--16:24}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2024}, url = {https://doi.org/10.4230/LIPIcs.WABI.2024.16}, doi = {10.4230/LIPICS.WABI.2024.16}, timestamp = {Mon, 26 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MarchandTSL24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/QiE24, author = {Yuanyuan Qi and Mohammed El{-}Kebir}, editor = {Solon P. Pissis and Wing{-}Kin Sung}, title = {Sapling: Inferring and Summarizing Tumor Phylogenies from Bulk Data Using Backbone Trees}, booktitle = {24th International Workshop on Algorithms in Bioinformatics, {WABI} 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom}, series = {LIPIcs}, volume = {312}, pages = {7:1--7:19}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2024}, url = {https://doi.org/10.4230/LIPIcs.WABI.2024.7}, doi = {10.4230/LIPICS.WABI.2024.7}, timestamp = {Mon, 26 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/QiE24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SanchezRFHL24, author = {Alitzel L{\'{o}}pez S{\'{a}}nchez and Jos{\'{e}} Antonio Ram{\'{\i}}rez{-}Rafael and Alejandro Flores{-}Lamas and Maribel Hern{\'{a}}ndez{-}Rosales and Manuel Lafond}, editor = {Solon P. Pissis and Wing{-}Kin Sung}, title = {The Path-Label Reconciliation {(PLR)} Dissimilarity Measure for Gene Trees}, booktitle = {24th International Workshop on Algorithms in Bioinformatics, {WABI} 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom}, series = {LIPIcs}, volume = {312}, pages = {20:1--20:21}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2024}, url = {https://doi.org/10.4230/LIPIcs.WABI.2024.20}, doi = {10.4230/LIPICS.WABI.2024.20}, timestamp = {Mon, 26 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SanchezRFHL24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SchmidtTMT24, author = {Sebastian S. Schmidt and Santeri Toivonen and Paul Medvedev and Alexandru I. Tomescu}, editor = {Solon P. Pissis and Wing{-}Kin Sung}, title = {Applying the Safe-And-Complete Framework to Practical Genome Assembly}, booktitle = {24th International Workshop on Algorithms in Bioinformatics, {WABI} 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom}, series = {LIPIcs}, volume = {312}, pages = {8:1--8:16}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2024}, url = {https://doi.org/10.4230/LIPIcs.WABI.2024.8}, doi = {10.4230/LIPICS.WABI.2024.8}, timestamp = {Sun, 06 Oct 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SchmidtTMT24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/UrataYH24, author = {Tsuyoshi Urata and Manato Yokoyama and Momoko Hayamizu}, editor = {Solon P. Pissis and Wing{-}Kin Sung}, title = {Orientability of Undirected Phylogenetic Networks to a Desired Class: Practical Algorithms and Application to Tree-Child Orientation}, booktitle = {24th International Workshop on Algorithms in Bioinformatics, {WABI} 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom}, series = {LIPIcs}, volume = {312}, pages = {9:1--9:17}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2024}, url = {https://doi.org/10.4230/LIPIcs.WABI.2024.9}, doi = {10.4230/LIPICS.WABI.2024.9}, timestamp = {Mon, 26 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/UrataYH24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Vinar24, author = {Tom{\'{a}}s Vinar}, editor = {Solon P. Pissis and Wing{-}Kin Sung}, title = {Bioinformatics of Pathogens (Invited Talk)}, booktitle = {24th International Workshop on Algorithms in Bioinformatics, {WABI} 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom}, series = {LIPIcs}, volume = {312}, pages = {1:1--1:2}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2024}, url = {https://doi.org/10.4230/LIPIcs.WABI.2024.1}, doi = {10.4230/LIPICS.WABI.2024.1}, timestamp = {Mon, 26 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Vinar24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/X24, editor = {Solon P. Pissis and Wing{-}Kin Sung}, title = {Front Matter, Table of Contents, Preface, Conference Organization}, booktitle = {24th International Workshop on Algorithms in Bioinformatics, {WABI} 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom}, series = {LIPIcs}, volume = {312}, pages = {0:i--0:xii}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2024}, url = {https://doi.org/10.4230/LIPIcs.WABI.2024.0}, doi = {10.4230/LIPICS.WABI.2024.0}, timestamp = {Mon, 26 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/X24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ZangLMBKS24, author = {Xiaofei Carl Zang and Xiang Li and Kyle Metcalfe and Tuval Ben{-}Yehezkel and Ryan Kelley and Mingfu Shao}, editor = {Solon P. Pissis and Wing{-}Kin Sung}, title = {Anchorage Accurately Assembles Anchor-Flanked Synthetic Long Reads}, booktitle = {24th International Workshop on Algorithms in Bioinformatics, {WABI} 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom}, series = {LIPIcs}, volume = {312}, pages = {22:1--22:17}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2024}, url = {https://doi.org/10.4230/LIPIcs.WABI.2024.22}, doi = {10.4230/LIPICS.WABI.2024.22}, timestamp = {Mon, 26 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ZangLMBKS24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ZentgrafR24, author = {Jens Zentgraf and Sven Rahmann}, editor = {Solon P. Pissis and Wing{-}Kin Sung}, title = {Swiftly Identifying Strongly Unique k-Mers}, booktitle = {24th International Workshop on Algorithms in Bioinformatics, {WABI} 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom}, series = {LIPIcs}, volume = {312}, pages = {15:1--15:15}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2024}, url = {https://doi.org/10.4230/LIPIcs.WABI.2024.15}, doi = {10.4230/LIPICS.WABI.2024.15}, timestamp = {Mon, 26 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ZentgrafR24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/wabi/2024, editor = {Solon P. Pissis and Wing{-}Kin Sung}, title = {24th International Workshop on Algorithms in Bioinformatics, {WABI} 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom}, series = {LIPIcs}, volume = {312}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2024}, url = {https://www.dagstuhl.de/dagpub/978-3-95977-340-9}, isbn = {978-3-95977-340-9}, timestamp = {Mon, 26 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/2024.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/0001CM23, author = {Nicola Rizzo and Manuel C{\'{a}}ceres and Veli M{\"{a}}kinen}, editor = {Djamal Belazzougui and A{\"{\i}}da Ouangraoua}, title = {Finding Maximal Exact Matches in Graphs}, booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI} 2023, September 4-6, 2023, Houston, TX, {USA}}, series = {LIPIcs}, volume = {273}, pages = {10:1--10:17}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2023}, url = {https://doi.org/10.4230/LIPIcs.WABI.2023.10}, doi = {10.4230/LIPICS.WABI.2023.10}, timestamp = {Wed, 21 Aug 2024 22:46:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/0001CM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/0001R0P23, author = {Pawel G{\'{o}}recki and Natalia Rutecka and Agnieszka Mykowiecka and Jaroslaw Paszek}, editor = {Djamal Belazzougui and A{\"{\i}}da Ouangraoua}, title = {Simultaneous Reconstruction of Duplication Episodes and Gene-Species Mappings}, booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI} 2023, September 4-6, 2023, Houston, TX, {USA}}, series = {LIPIcs}, volume = {273}, pages = {6:1--6:18}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2023}, url = {https://doi.org/10.4230/LIPIcs.WABI.2023.6}, doi = {10.4230/LIPICS.WABI.2023.6}, timestamp = {Tue, 29 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/0001R0P23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ArastiM23, author = {Shayesteh Arasti and Siavash Mirarab}, editor = {Djamal Belazzougui and A{\"{\i}}da Ouangraoua}, title = {Optimal Subtree Prune and Regraft for Quartet Score in Sub-Quadratic Time}, booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI} 2023, September 4-6, 2023, Houston, TX, {USA}}, series = {LIPIcs}, volume = {273}, pages = {4:1--4:20}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2023}, url = {https://doi.org/10.4230/LIPIcs.WABI.2023.4}, doi = {10.4230/LIPICS.WABI.2023.4}, timestamp = {Tue, 29 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ArastiM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Bohnenkamper23, author = {Leonard Bohnenk{\"{a}}mper}, editor = {Djamal Belazzougui and A{\"{\i}}da Ouangraoua}, title = {Bridging Disparate Views on the DCJ-Indel Model for a Capping-Free Solution to the Natural Distance Problem}, booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI} 2023, September 4-6, 2023, Houston, TX, {USA}}, series = {LIPIcs}, volume = {273}, pages = {22:1--22:18}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2023}, url = {https://doi.org/10.4230/LIPIcs.WABI.2023.22}, doi = {10.4230/LIPICS.WABI.2023.22}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/Bohnenkamper23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BouryPR23, author = {Th{\'{e}}o Boury and Yann Ponty and Vladimir Reinharz}, editor = {Djamal Belazzougui and A{\"{\i}}da Ouangraoua}, title = {Automatic Exploration of the Natural Variability of {RNA} Non-Canonical Geometric Patterns with a Parameterized Sampling Technique}, booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI} 2023, September 4-6, 2023, Houston, TX, {USA}}, series = {LIPIcs}, volume = {273}, pages = {20:1--20:22}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2023}, url = {https://doi.org/10.4230/LIPIcs.WABI.2023.20}, doi = {10.4230/LIPICS.WABI.2023.20}, timestamp = {Sun, 06 Oct 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BouryPR23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DaiRHM23, author = {Junyan Dai and Tobias Rubel and Yunheng Han and Erin K. Molloy}, editor = {Djamal Belazzougui and A{\"{\i}}da Ouangraoua}, title = {Leveraging Constraints Plus Dynamic Programming for the Large Dollo Parsimony Problem}, booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI} 2023, September 4-6, 2023, Houston, TX, {USA}}, series = {LIPIcs}, volume = {273}, pages = {5:1--5:23}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2023}, url = {https://doi.org/10.4230/LIPIcs.WABI.2023.5}, doi = {10.4230/LIPICS.WABI.2023.5}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DaiRHM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/FanSKPP23, author = {Jason Fan and Noor Pratap Singh and Jamshed Khan and Giulio Ermanno Pibiri and Rob Patro}, editor = {Djamal Belazzougui and A{\"{\i}}da Ouangraoua}, title = {Fulgor: {A} Fast and Compact \{k-mer\} Index for Large-Scale Matching and Color Queries}, booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI} 2023, September 4-6, 2023, Houston, TX, {USA}}, series = {LIPIcs}, volume = {273}, pages = {18:1--18:21}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2023}, url = {https://doi.org/10.4230/LIPIcs.WABI.2023.18}, doi = {10.4230/LIPICS.WABI.2023.18}, timestamp = {Tue, 29 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/FanSKPP23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/FerdosiGK23, author = {Mohsen Ferdosi and Yuejun Ge and Carl Kingsford}, editor = {Djamal Belazzougui and A{\"{\i}}da Ouangraoua}, title = {Reinforcement Learning for Robotic Liquid Handler Planning}, booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI} 2023, September 4-6, 2023, Houston, TX, {USA}}, series = {LIPIcs}, volume = {273}, pages = {23:1--23:16}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2023}, url = {https://doi.org/10.4230/LIPIcs.WABI.2023.23}, doi = {10.4230/LIPICS.WABI.2023.23}, timestamp = {Tue, 29 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/FerdosiGK23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GrayWJ23, author = {Mateo Gray and Sebastian Will and Hosna Jabbari}, editor = {Djamal Belazzougui and A{\"{\i}}da Ouangraoua}, title = {SparseRNAFolD: Sparse {RNA} Pseudoknot-Free Folding Including Dangles}, booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI} 2023, September 4-6, 2023, Houston, TX, {USA}}, series = {LIPIcs}, volume = {273}, pages = {19:1--19:18}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2023}, url = {https://doi.org/10.4230/LIPIcs.WABI.2023.19}, doi = {10.4230/LIPICS.WABI.2023.19}, timestamp = {Sun, 06 Oct 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/GrayWJ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GuQE23, author = {Xinyu Gu and Yuanyuan Qi and Mohammed El{-}Kebir}, editor = {Djamal Belazzougui and A{\"{\i}}da Ouangraoua}, title = {Balancing Minimum Free Energy and Codon Adaptation Index for Pareto Optimal {RNA} Design}, booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI} 2023, September 4-6, 2023, Houston, TX, {USA}}, series = {LIPIcs}, volume = {273}, pages = {21:1--21:20}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2023}, url = {https://doi.org/10.4230/LIPIcs.WABI.2023.21}, doi = {10.4230/LIPICS.WABI.2023.21}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/GuQE23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HanM23, author = {Yunheng Han and Erin K. Molloy}, editor = {Djamal Belazzougui and A{\"{\i}}da Ouangraoua}, title = {Quartets Enable Statistically Consistent Estimation of Cell Lineage Trees Under an Unbiased Error and Missingness Model (Abstract)}, booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI} 2023, September 4-6, 2023, Houston, TX, {USA}}, series = {LIPIcs}, volume = {273}, pages = {8:1--8:2}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2023}, url = {https://doi.org/10.4230/LIPIcs.WABI.2023.8}, doi = {10.4230/LIPICS.WABI.2023.8}, timestamp = {Tue, 29 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HanM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HongOKBBG23, author = {Aaron Hong and Marco Oliva and Dominik K{\"{o}}ppl and Hideo Bannai and Christina Boucher and Travis Gagie}, editor = {Djamal Belazzougui and A{\"{\i}}da Ouangraoua}, title = {Acceleration of FM-Index Queries Through Prefix-Free Parsing}, booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI} 2023, September 4-6, 2023, Houston, TX, {USA}}, series = {LIPIcs}, volume = {273}, pages = {13:1--13:16}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2023}, url = {https://doi.org/10.4230/LIPIcs.WABI.2023.13}, doi = {10.4230/LIPICS.WABI.2023.13}, timestamp = {Mon, 10 Jun 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HongOKBBG23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Iersel0JM23, author = {Leo van Iersel and Mark Jones and Esther Julien and Yukihiro Murakami}, editor = {Djamal Belazzougui and A{\"{\i}}da Ouangraoua}, title = {Making a Network Orchard by Adding Leaves}, booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI} 2023, September 4-6, 2023, Houston, TX, {USA}}, series = {LIPIcs}, volume = {273}, pages = {7:1--7:20}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2023}, url = {https://doi.org/10.4230/LIPIcs.WABI.2023.7}, doi = {10.4230/LIPICS.WABI.2023.7}, timestamp = {Tue, 29 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Iersel0JM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KhanRDMP23, author = {Jamshed Khan and Tobias Rubel and Laxman Dhulipala and Erin K. Molloy and Rob Patro}, editor = {Djamal Belazzougui and A{\"{\i}}da Ouangraoua}, title = {Fast, Parallel, and Cache-Friendly Suffix Array Construction}, booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI} 2023, September 4-6, 2023, Houston, TX, {USA}}, series = {LIPIcs}, volume = {273}, pages = {16:1--16:21}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2023}, url = {https://doi.org/10.4230/LIPIcs.WABI.2023.16}, doi = {10.4230/LIPICS.WABI.2023.16}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/KhanRDMP23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Przytycka23, author = {Teresa M. Przytycka}, editor = {Djamal Belazzougui and A{\"{\i}}da Ouangraoua}, title = {Algorithmic Approaches to Study Mutational Processes in Cancer (Invited Talk)}, booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI} 2023, September 4-6, 2023, Houston, TX, {USA}}, series = {LIPIcs}, volume = {273}, pages = {1:1--1:2}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2023}, url = {https://doi.org/10.4230/LIPIcs.WABI.2023.1}, doi = {10.4230/LIPICS.WABI.2023.1}, timestamp = {Tue, 29 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Przytycka23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/QiuSK23, author = {Yutong Qiu and Yihang Shen and Carl Kingsford}, editor = {Djamal Belazzougui and A{\"{\i}}da Ouangraoua}, title = {Revisiting the Complexity of and Algorithms for the Graph Traversal Edit Distance and Its Variants}, booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI} 2023, September 4-6, 2023, Houston, TX, {USA}}, series = {LIPIcs}, volume = {273}, pages = {11:1--11:22}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2023}, url = {https://doi.org/10.4230/LIPIcs.WABI.2023.11}, doi = {10.4230/LIPICS.WABI.2023.11}, timestamp = {Tue, 29 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/QiuSK23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/RahmanDM23, author = {Amatur Rahman and Yoann Dufresne and Paul Medvedev}, editor = {Djamal Belazzougui and A{\"{\i}}da Ouangraoua}, title = {Compression Algorithm for Colored de Bruijn Graphs}, booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI} 2023, September 4-6, 2023, Houston, TX, {USA}}, series = {LIPIcs}, volume = {273}, pages = {17:1--17:14}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2023}, url = {https://doi.org/10.4230/LIPIcs.WABI.2023.17}, doi = {10.4230/LIPICS.WABI.2023.17}, timestamp = {Sun, 06 Oct 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/RahmanDM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/RajputCJ23, author = {Jyotshna Rajput and Ghanshyam Chandra and Chirag Jain}, editor = {Djamal Belazzougui and A{\"{\i}}da Ouangraoua}, title = {Co-Linear Chaining on Pangenome Graphs}, booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI} 2023, September 4-6, 2023, Houston, TX, {USA}}, series = {LIPIcs}, volume = {273}, pages = {12:1--12:18}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2023}, url = {https://doi.org/10.4230/LIPIcs.WABI.2023.12}, doi = {10.4230/LIPICS.WABI.2023.12}, timestamp = {Tue, 29 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/RajputCJ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/RoddurSE23, author = {Mrinmoy Saha Roddur and Sagi Snir and Mohammed El{-}Kebir}, editor = {Djamal Belazzougui and A{\"{\i}}da Ouangraoua}, title = {Inferring Temporally Consistent Migration Histories}, booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI} 2023, September 4-6, 2023, Houston, TX, {USA}}, series = {LIPIcs}, volume = {273}, pages = {9:1--9:22}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2023}, url = {https://doi.org/10.4230/LIPIcs.WABI.2023.9}, doi = {10.4230/LIPICS.WABI.2023.9}, timestamp = {Tue, 29 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/RoddurSE23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/RouzeMML23, author = {Timoth{\'{e}} Rouz{\'{e}} and Igor Martayan and Camille Marchet and Antoine Limasset}, editor = {Djamal Belazzougui and A{\"{\i}}da Ouangraoua}, title = {Fractional Hitting Sets for Efficient and Lightweight Genomic Data Sketching}, booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI} 2023, September 4-6, 2023, Houston, TX, {USA}}, series = {LIPIcs}, volume = {273}, pages = {15:1--15:27}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2023}, url = {https://doi.org/10.4230/LIPIcs.WABI.2023.15}, doi = {10.4230/LIPICS.WABI.2023.15}, timestamp = {Tue, 29 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/RouzeMML23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SchulzM23, author = {Tizian Schulz and Paul Medvedev}, editor = {Djamal Belazzougui and A{\"{\i}}da Ouangraoua}, title = {Exact Sketch-Based Read Mapping}, booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI} 2023, September 4-6, 2023, Houston, TX, {USA}}, series = {LIPIcs}, volume = {273}, pages = {14:1--14:19}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2023}, url = {https://doi.org/10.4230/LIPIcs.WABI.2023.14}, doi = {10.4230/LIPICS.WABI.2023.14}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SchulzM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ShenLWW23, author = {Chengze Shen and Baqiao Liu and Kelly P. Williams and Tandy J. Warnow}, editor = {Djamal Belazzougui and A{\"{\i}}da Ouangraoua}, title = {{EMMA:} Adding Sequences into a Constraint Alignment with High Accuracy and Scalability (Abstract)}, booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI} 2023, September 4-6, 2023, Houston, TX, {USA}}, series = {LIPIcs}, volume = {273}, pages = {2:1--2:2}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2023}, url = {https://doi.org/10.4230/LIPIcs.WABI.2023.2}, doi = {10.4230/LIPICS.WABI.2023.2}, timestamp = {Tue, 29 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ShenLWW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/WedellSW23, author = {Eleanor Wedell and Chengze Shen and Tandy J. Warnow}, editor = {Djamal Belazzougui and A{\"{\i}}da Ouangraoua}, title = {{BATCH-SCAMPP:} Scaling Phylogenetic Placement Methods to Place Many Sequences (Abstract)}, booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI} 2023, September 4-6, 2023, Houston, TX, {USA}}, series = {LIPIcs}, volume = {273}, pages = {3:1--3:2}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2023}, url = {https://doi.org/10.4230/LIPIcs.WABI.2023.3}, doi = {10.4230/LIPICS.WABI.2023.3}, timestamp = {Tue, 29 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/WedellSW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/X23, editor = {Djamal Belazzougui and A{\"{\i}}da Ouangraoua}, title = {Front Matter, Table of Contents, Preface, Conference Organization}, booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI} 2023, September 4-6, 2023, Houston, TX, {USA}}, series = {LIPIcs}, volume = {273}, pages = {0:1--0:14}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2023}, url = {https://doi.org/10.4230/LIPIcs.WABI.2023.0}, doi = {10.4230/LIPICS.WABI.2023.0}, timestamp = {Tue, 29 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/X23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/wabi/2023, editor = {Djamal Belazzougui and A{\"{\i}}da Ouangraoua}, title = {23rd International Workshop on Algorithms in Bioinformatics, {WABI} 2023, September 4-6, 2023, Houston, TX, {USA}}, series = {LIPIcs}, volume = {273}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2023}, url = {https://www.dagstuhl.de/dagpub/978-3-95977-294-5}, isbn = {978-3-95977-294-5}, timestamp = {Wed, 21 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/2023.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/AgretCL22, author = {Cl{\'{e}}ment Agret and Bastien Cazaux and Antoine Limasset}, editor = {Christina Boucher and Sven Rahmann}, title = {Toward Optimal Fingerprint Indexing for Large Scale Genomics}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI} 2022, September 5-7, 2022, Potsdam, Germany}, series = {LIPIcs}, volume = {242}, pages = {25:1--25:15}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2022}, url = {https://doi.org/10.4230/LIPIcs.WABI.2022.25}, doi = {10.4230/LIPICS.WABI.2022.25}, timestamp = {Wed, 21 Aug 2024 22:46:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/AgretCL22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BernardiniIJS22, author = {Giulia Bernardini and Leo van Iersel and Esther Julien and Leen Stougie}, editor = {Christina Boucher and Sven Rahmann}, title = {Reconstructing Phylogenetic Networks via Cherry Picking and Machine Learning}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI} 2022, September 5-7, 2022, Potsdam, Germany}, series = {LIPIcs}, volume = {242}, pages = {16:1--16:22}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2022}, url = {https://doi.org/10.4230/LIPIcs.WABI.2022.16}, doi = {10.4230/LIPICS.WABI.2022.16}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BernardiniIJS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BonnetMD22, author = {Konstantinn Bonnet and Tobias Marschall and Daniel Doerr}, editor = {Christina Boucher and Sven Rahmann}, title = {Constructing Founder Sets Under Allelic and Non-Allelic Homologous Recombination}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI} 2022, September 5-7, 2022, Potsdam, Germany}, series = {LIPIcs}, volume = {242}, pages = {6:1--6:23}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2022}, url = {https://doi.org/10.4230/LIPIcs.WABI.2022.6}, doi = {10.4230/LIPICS.WABI.2022.6}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BonnetMD22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BragaBKS22, author = {Mar{\'{\i}}lia D. V. Braga and Leonie R. Brockmann and Katharina Klerx and Jens Stoye}, editor = {Christina Boucher and Sven Rahmann}, title = {A Linear Time Algorithm for an Extended Version of the Breakpoint Double Distance}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI} 2022, September 5-7, 2022, Potsdam, Germany}, series = {LIPIcs}, volume = {242}, pages = {13:1--13:16}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2022}, url = {https://doi.org/10.4230/LIPIcs.WABI.2022.13}, doi = {10.4230/LIPICS.WABI.2022.13}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BragaBKS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ChenS22, author = {Ke Chen and Mingfu Shao}, editor = {Christina Boucher and Sven Rahmann}, title = {Locality-Sensitive Bucketing Functions for the Edit Distance}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI} 2022, September 5-7, 2022, Potsdam, Germany}, series = {LIPIcs}, volume = {242}, pages = {22:1--22:14}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2022}, url = {https://doi.org/10.4230/LIPIcs.WABI.2022.22}, doi = {10.4230/LIPICS.WABI.2022.22}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ChenS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GasconE22, author = {Mathieu Gascon and Nadia El{-}Mabrouk}, editor = {Christina Boucher and Sven Rahmann}, title = {Non-Binary Tree Reconciliation with Endosymbiotic Gene Transfer}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI} 2022, September 5-7, 2022, Potsdam, Germany}, series = {LIPIcs}, volume = {242}, pages = {5:1--5:20}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2022}, url = {https://doi.org/10.4230/LIPIcs.WABI.2022.5}, doi = {10.4230/LIPICS.WABI.2022.5}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/GasconE22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GibneyTA22, author = {Daniel Gibney and Sharma V. Thankachan and Srinivas Aluru}, editor = {Christina Boucher and Sven Rahmann}, title = {Feasibility of Flow Decomposition with Subpath Constraints in Linear Time}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI} 2022, September 5-7, 2022, Potsdam, Germany}, series = {LIPIcs}, volume = {242}, pages = {17:1--17:16}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2022}, url = {https://doi.org/10.4230/LIPIcs.WABI.2022.17}, doi = {10.4230/LIPICS.WABI.2022.17}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/GibneyTA22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GogaB22, author = {Adri{\'{a}}n Goga and Andrej Bal{\'{a}}z}, editor = {Christina Boucher and Sven Rahmann}, title = {Prefix-Free Parsing for Building Large Tunnelled Wheeler Graphs}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI} 2022, September 5-7, 2022, Potsdam, Germany}, series = {LIPIcs}, volume = {242}, pages = {18:1--18:12}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2022}, url = {https://doi.org/10.4230/LIPIcs.WABI.2022.18}, doi = {10.4230/LIPICS.WABI.2022.18}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/GogaB22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GuerriniCGLRT22, author = {Veronica Guerrini and Alessio Conte and Roberto Grossi and Gianni Liti and Giovanna Rosone and Lorenzo Tattini}, editor = {Christina Boucher and Sven Rahmann}, title = {phyBWT: Alignment-Free Phylogeny via eBWT Positional Clustering}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI} 2022, September 5-7, 2022, Potsdam, Germany}, series = {LIPIcs}, volume = {242}, pages = {23:1--23:19}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2022}, url = {https://doi.org/10.4230/LIPIcs.WABI.2022.23}, doi = {10.4230/LIPICS.WABI.2022.23}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/GuerriniCGLRT22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LiptakMP22, author = {Zsuzsanna Lipt{\'{a}}k and Francesco Masillo and Simon J. Puglisi}, editor = {Christina Boucher and Sven Rahmann}, title = {Suffix Sorting via Matching Statistics}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI} 2022, September 5-7, 2022, Potsdam, Germany}, series = {LIPIcs}, volume = {242}, pages = {20:1--20:15}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2022}, url = {https://doi.org/10.4230/LIPIcs.WABI.2022.20}, doi = {10.4230/LIPICS.WABI.2022.20}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LiptakMP22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LiuW22, author = {Baqiao Liu and Tandy J. Warnow}, editor = {Christina Boucher and Sven Rahmann}, title = {Fast and Accurate Species Trees from Weighted Internode Distances}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI} 2022, September 5-7, 2022, Potsdam, Germany}, series = {LIPIcs}, volume = {242}, pages = {8:1--8:24}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2022}, url = {https://doi.org/10.4230/LIPIcs.WABI.2022.8}, doi = {10.4230/LIPICS.WABI.2022.8}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LiuW22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MarchandWBBP22, author = {Bertrand Marchand and Sebastian Will and Sarah J. Berkemer and Laurent Bulteau and Yann Ponty}, editor = {Christina Boucher and Sven Rahmann}, title = {Automated Design of Dynamic Programming Schemes for {RNA} Folding with Pseudoknots}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI} 2022, September 5-7, 2022, Potsdam, Germany}, series = {LIPIcs}, volume = {242}, pages = {7:1--7:24}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2022}, url = {https://doi.org/10.4230/LIPIcs.WABI.2022.7}, doi = {10.4230/LIPICS.WABI.2022.7}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MarchandWBBP22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MunKL22, author = {Taher Mun and Naga Sai Kavya Vaddadi and Ben Langmead}, editor = {Christina Boucher and Sven Rahmann}, title = {Pangenomic Genotyping with the Marker Array}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI} 2022, September 5-7, 2022, Potsdam, Germany}, series = {LIPIcs}, volume = {242}, pages = {19:1--19:17}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2022}, url = {https://doi.org/10.4230/LIPIcs.WABI.2022.19}, doi = {10.4230/LIPICS.WABI.2022.19}, timestamp = {Wed, 18 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MunKL22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/OzeryZZ22, author = {Eden Ozery and Meirav Zehavi and Michal Ziv{-}Ukelson}, editor = {Christina Boucher and Sven Rahmann}, title = {New Algorithms for Structure Informed Genome Rearrangement}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI} 2022, September 5-7, 2022, Potsdam, Germany}, series = {LIPIcs}, volume = {242}, pages = {11:1--11:19}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2022}, url = {https://doi.org/10.4230/LIPIcs.WABI.2022.11}, doi = {10.4230/LIPICS.WABI.2022.11}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/OzeryZZ22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Pibiri22, author = {Giulio Ermanno Pibiri}, editor = {Christina Boucher and Sven Rahmann}, title = {On Weighted k-mer Dictionaries}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI} 2022, September 5-7, 2022, Potsdam, Germany}, series = {LIPIcs}, volume = {242}, pages = {9:1--9:20}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2022}, url = {https://doi.org/10.4230/LIPIcs.WABI.2022.9}, doi = {10.4230/LIPICS.WABI.2022.9}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Pibiri22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/RubertB22, author = {Diego P. Rubert and Mar{\'{\i}}lia D. V. Braga}, editor = {Christina Boucher and Sven Rahmann}, title = {Gene Orthology Inference via Large-Scale Rearrangements for Partially Assembled Genomes}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI} 2022, September 5-7, 2022, Potsdam, Germany}, series = {LIPIcs}, volume = {242}, pages = {24:1--24:22}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2022}, url = {https://doi.org/10.4230/LIPIcs.WABI.2022.24}, doi = {10.4230/LIPICS.WABI.2022.24}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/RubertB22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Salmela22, author = {Leena Salmela}, editor = {Christina Boucher and Sven Rahmann}, title = {Efficient Solutions to Biological Problems Using de Bruijn Graphs (Invited Talk)}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI} 2022, September 5-7, 2022, Potsdam, Germany}, series = {LIPIcs}, volume = {242}, pages = {1:1--1:2}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2022}, url = {https://doi.org/10.4230/LIPIcs.WABI.2022.1}, doi = {10.4230/LIPICS.WABI.2022.1}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Salmela22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SanaullahZZ22, author = {Ahsan Sanaullah and Degui Zhi and Shaoije Zhang}, editor = {Christina Boucher and Sven Rahmann}, title = {Haplotype Threading Using the Positional Burrows-Wheeler Transform}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI} 2022, September 5-7, 2022, Potsdam, Germany}, series = {LIPIcs}, volume = {242}, pages = {4:1--4:14}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2022}, url = {https://doi.org/10.4230/LIPIcs.WABI.2022.4}, doi = {10.4230/LIPICS.WABI.2022.4}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SanaullahZZ22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SanchezL22, author = {Alitzel L{\'{o}}pez S{\'{a}}nchez and Manuel Lafond}, editor = {Christina Boucher and Sven Rahmann}, title = {Predicting Horizontal Gene Transfers with Perfect Transfer Networks}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI} 2022, September 5-7, 2022, Potsdam, Germany}, series = {LIPIcs}, volume = {242}, pages = {3:1--3:22}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2022}, url = {https://doi.org/10.4230/LIPIcs.WABI.2022.3}, doi = {10.4230/LIPICS.WABI.2022.3}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SanchezL22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SchmidtA22, author = {Sebastian S. Schmidt and Jarno N. Alanko}, editor = {Christina Boucher and Sven Rahmann}, title = {Eulertigs: Minimum Plain Text Representation of k-mer Sets Without Repetitions in Linear Time}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI} 2022, September 5-7, 2022, Potsdam, Germany}, series = {LIPIcs}, volume = {242}, pages = {2:1--2:21}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2022}, url = {https://doi.org/10.4230/LIPIcs.WABI.2022.2}, doi = {10.4230/LIPICS.WABI.2022.2}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SchmidtA22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ShibuyaBK22, author = {Yoshihiro Shibuya and Djamal Belazzougui and Gregory Kucherov}, editor = {Christina Boucher and Sven Rahmann}, title = {Efficient Reconciliation of Genomic Datasets of High Similarity}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI} 2022, September 5-7, 2022, Potsdam, Germany}, series = {LIPIcs}, volume = {242}, pages = {14:1--14:14}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2022}, url = {https://doi.org/10.4230/LIPIcs.WABI.2022.14}, doi = {10.4230/LIPICS.WABI.2022.14}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ShibuyaBK22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SimonaitisR22, author = {Pijus Simonaitis and Benjamin J. Raphael}, editor = {Christina Boucher and Sven Rahmann}, title = {A Maximum Parsimony Principle for Multichromosomal Complex Genome Rearrangements}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI} 2022, September 5-7, 2022, Potsdam, Germany}, series = {LIPIcs}, volume = {242}, pages = {21:1--21:22}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2022}, url = {https://doi.org/10.4230/LIPIcs.WABI.2022.21}, doi = {10.4230/LIPICS.WABI.2022.21}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SimonaitisR22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SuzukiM22, author = {Yoshihiko Suzuki and Gene Myers}, editor = {Christina Boucher and Sven Rahmann}, title = {Accurate k-mer Classification Using Read Profiles}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI} 2022, September 5-7, 2022, Potsdam, Germany}, series = {LIPIcs}, volume = {242}, pages = {10:1--10:20}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2022}, url = {https://doi.org/10.4230/LIPIcs.WABI.2022.10}, doi = {10.4230/LIPICS.WABI.2022.10}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SuzukiM22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/WeiK22, author = {Wei Wei and David Koslicki}, editor = {Christina Boucher and Sven Rahmann}, title = {WGSUniFrac: Applying UniFrac Metric to Whole Genome Shotgun Data}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI} 2022, September 5-7, 2022, Potsdam, Germany}, series = {LIPIcs}, volume = {242}, pages = {15:1--15:22}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2022}, url = {https://doi.org/10.4230/LIPIcs.WABI.2022.15}, doi = {10.4230/LIPICS.WABI.2022.15}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/WeiK22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ZentgrafR22, author = {Jens Zentgraf and Sven Rahmann}, editor = {Christina Boucher and Sven Rahmann}, title = {Fast Gapped k-mer Counting with Subdivided Multi-Way Bucketed Cuckoo Hash Tables}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI} 2022, September 5-7, 2022, Potsdam, Germany}, series = {LIPIcs}, volume = {242}, pages = {12:1--12:20}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2022}, url = {https://doi.org/10.4230/LIPIcs.WABI.2022.12}, doi = {10.4230/LIPICS.WABI.2022.12}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ZentgrafR22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/wabi/2022, editor = {Christina Boucher and Sven Rahmann}, title = {22nd International Workshop on Algorithms in Bioinformatics, {WABI} 2022, September 5-7, 2022, Potsdam, Germany}, series = {LIPIcs}, volume = {242}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2022}, url = {https://www.dagstuhl.de/dagpub/978-3-95977-243-3}, isbn = {978-3-95977-243-3}, timestamp = {Wed, 21 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/2022.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BoriaGPM21, author = {Nicolas Boria and Laurent Gourv{\`{e}}s and Vangelis Th. Paschos and J{\'{e}}r{\^{o}}me Monnot}, editor = {Alessandra Carbone and Mohammed El{-}Kebir}, title = {The Maximum Duo-Preservation String Mapping Problem with Bounded Alphabet}, booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI} 2021, August 2-4, 2021, Virtual Conference}, series = {LIPIcs}, volume = {201}, pages = {5:1--5:12}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2021}, url = {https://doi.org/10.4230/LIPIcs.WABI.2021.5}, doi = {10.4230/LIPICS.WABI.2021.5}, timestamp = {Wed, 21 Aug 2024 22:46:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BoriaGPM21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BoroojenyRC21, author = {Ali Ebrahimpour Boroojeny and Sanjay V. Rajopadhye and Hamidreza Chitsaz}, editor = {Alessandra Carbone and Mohammed El{-}Kebir}, title = {BPPart: {RNA-RNA} Interaction Partition Function in the Absence of Entropy}, booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI} 2021, August 2-4, 2021, Virtual Conference}, series = {LIPIcs}, volume = {201}, pages = {14:1--14:24}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2021}, url = {https://doi.org/10.4230/LIPIcs.WABI.2021.14}, doi = {10.4230/LIPICS.WABI.2021.14}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BoroojenyRC21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/FanCP21, author = {Jason Fan and Skylar Chan and Rob Patro}, editor = {Alessandra Carbone and Mohammed El{-}Kebir}, title = {Perplexity: Evaluating Transcript Abundance Estimation in the Absence of Ground Truth}, booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI} 2021, August 2-4, 2021, Virtual Conference}, series = {LIPIcs}, volume = {201}, pages = {4:1--4:22}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2021}, url = {https://doi.org/10.4230/LIPIcs.WABI.2021.4}, doi = {10.4230/LIPICS.WABI.2021.4}, timestamp = {Thu, 22 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/FanCP21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GagieGM21, author = {Travis Gagie and Garance Gourdel and Giovanni Manzini}, editor = {Alessandra Carbone and Mohammed El{-}Kebir}, title = {Compressing and Indexing Aligned Readsets}, booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI} 2021, August 2-4, 2021, Virtual Conference}, series = {LIPIcs}, volume = {201}, pages = {13:1--13:21}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2021}, url = {https://doi.org/10.4230/LIPIcs.WABI.2021.13}, doi = {10.4230/LIPICS.WABI.2021.13}, timestamp = {Thu, 22 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/GagieGM21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/IsericAHN21, author = {Hamza Iseric and Can Alkan and Faraz Hach and Ibrahim Numanagic}, editor = {Alessandra Carbone and Mohammed El{-}Kebir}, title = {{BISER:} Fast Characterization of Segmental Duplication Structure in Multiple Genome Assemblies}, booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI} 2021, August 2-4, 2021, Virtual Conference}, series = {LIPIcs}, volume = {201}, pages = {15:1--15:18}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2021}, url = {https://doi.org/10.4230/LIPIcs.WABI.2021.15}, doi = {10.4230/LIPICS.WABI.2021.15}, timestamp = {Thu, 22 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/IsericAHN21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/JewLSS21, author = {Brandon Jew and Jiajin Li and Sriram Sankararaman and Jae Hoon Sul}, editor = {Alessandra Carbone and Mohammed El{-}Kebir}, title = {An Efficient Linear Mixed Model Framework for Meta-Analytic Association Studies Across Multiple Contexts}, booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI} 2021, August 2-4, 2021, Virtual Conference}, series = {LIPIcs}, volume = {201}, pages = {10:1--10:17}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2021}, url = {https://doi.org/10.4230/LIPIcs.WABI.2021.10}, doi = {10.4230/LIPICS.WABI.2021.10}, timestamp = {Thu, 22 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/JewLSS21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KitayaS21, author = {Kazushi Kitaya and Tetsuo Shibuya}, editor = {Alessandra Carbone and Mohammed El{-}Kebir}, title = {Compression of Multiple k-Mer Sets by Iterative {SPSS} Decomposition}, booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI} 2021, August 2-4, 2021, Virtual Conference}, series = {LIPIcs}, volume = {201}, pages = {12:1--12:17}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2021}, url = {https://doi.org/10.4230/LIPIcs.WABI.2021.12}, doi = {10.4230/LIPICS.WABI.2021.12}, timestamp = {Thu, 22 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/KitayaS21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KriegerK21, author = {Spencer Krieger and John D. Kececioglu}, editor = {Alessandra Carbone and Mohammed El{-}Kebir}, title = {Fast Approximate Shortest Hyperpaths for Inferring Pathways in Cell Signaling Hypergraphs}, booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI} 2021, August 2-4, 2021, Virtual Conference}, series = {LIPIcs}, volume = {201}, pages = {20:1--20:20}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2021}, url = {https://doi.org/10.4230/LIPIcs.WABI.2021.20}, doi = {10.4230/LIPICS.WABI.2021.20}, timestamp = {Thu, 22 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/KriegerK21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LeMayWL21, author = {Matthew LeMay and Yi{-}Chieh Wu and Ran Libeskind{-}Hadas}, editor = {Alessandra Carbone and Mohammed El{-}Kebir}, title = {The Most Parsimonious Reconciliation Problem in the Presence of Incomplete Lineage Sorting and Hybridization Is NP-Hard}, booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI} 2021, August 2-4, 2021, Virtual Conference}, series = {LIPIcs}, volume = {201}, pages = {1:1--1:10}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2021}, url = {https://doi.org/10.4230/LIPIcs.WABI.2021.1}, doi = {10.4230/LIPICS.WABI.2021.1}, timestamp = {Thu, 22 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LeMayWL21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MarchandPB21, author = {Bertrand Marchand and Yann Ponty and Laurent Bulteau}, editor = {Alessandra Carbone and Mohammed El{-}Kebir}, title = {Tree Diet: Reducing the Treewidth to Unlock {FPT} Algorithms in {RNA} Bioinformatics}, booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI} 2021, August 2-4, 2021, Virtual Conference}, series = {LIPIcs}, volume = {201}, pages = {7:1--7:23}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2021}, url = {https://doi.org/10.4230/LIPIcs.WABI.2021.7}, doi = {10.4230/LIPICS.WABI.2021.7}, timestamp = {Thu, 22 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MarchandPB21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/NakagawaOS21, author = {Yoshiki Nakagawa and Satsuya Ohata and Kana Shimizu}, editor = {Alessandra Carbone and Mohammed El{-}Kebir}, title = {Efficient Privacy-Preserving Variable-Length Substring Match for Genome Sequence}, booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI} 2021, August 2-4, 2021, Virtual Conference}, series = {LIPIcs}, volume = {201}, pages = {2:1--2:23}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2021}, url = {https://doi.org/10.4230/LIPIcs.WABI.2021.2}, doi = {10.4230/LIPICS.WABI.2021.2}, timestamp = {Sun, 06 Oct 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/NakagawaOS21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/NaseriYZZ21, author = {Ardalan Naseri and William Yue and Shaojie Zhang and Degui Zhi}, editor = {Alessandra Carbone and Mohammed El{-}Kebir}, title = {Efficient Haplotype Block Matching in Bi-Directional {PBWT}}, booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI} 2021, August 2-4, 2021, Virtual Conference}, series = {LIPIcs}, volume = {201}, pages = {19:1--19:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2021}, url = {https://doi.org/10.4230/LIPIcs.WABI.2021.19}, doi = {10.4230/LIPICS.WABI.2021.19}, timestamp = {Thu, 22 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/NaseriYZZ21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SashittalZE21, author = {Palash Sashittal and Simone Zaccaria and Mohammed El{-}Kebir}, editor = {Alessandra Carbone and Mohammed El{-}Kebir}, title = {Parsimonious Clone Tree Reconciliation in Cancer}, booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI} 2021, August 2-4, 2021, Virtual Conference}, series = {LIPIcs}, volume = {201}, pages = {9:1--9:21}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2021}, url = {https://doi.org/10.4230/LIPIcs.WABI.2021.9}, doi = {10.4230/LIPICS.WABI.2021.9}, timestamp = {Thu, 22 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SashittalZE21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ScornavaccaW21, author = {C{\'{e}}line Scornavacca and Mathias Weller}, editor = {Alessandra Carbone and Mohammed El{-}Kebir}, title = {Treewidth-Based Algorithms for the Small Parsimony Problem on Networks}, booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI} 2021, August 2-4, 2021, Virtual Conference}, series = {LIPIcs}, volume = {201}, pages = {6:1--6:21}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2021}, url = {https://doi.org/10.4230/LIPIcs.WABI.2021.6}, doi = {10.4230/LIPICS.WABI.2021.6}, timestamp = {Thu, 22 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ScornavaccaW21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ShibuyaBK21, author = {Yoshihiro Shibuya and Djamal Belazzougui and Gregory Kucherov}, editor = {Alessandra Carbone and Mohammed El{-}Kebir}, title = {Space-Efficient Representation of Genomic k-Mer Count Tables}, booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI} 2021, August 2-4, 2021, Virtual Conference}, series = {LIPIcs}, volume = {201}, pages = {8:1--8:19}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2021}, url = {https://doi.org/10.4230/LIPIcs.WABI.2021.8}, doi = {10.4230/LIPICS.WABI.2021.8}, timestamp = {Thu, 22 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ShibuyaBK21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/WangMSS21, author = {Yishu Wang and Arnaud Mary and Marie{-}France Sagot and Blerina Sinaimeri}, editor = {Alessandra Carbone and Mohammed El{-}Kebir}, title = {Making Sense of a Cophylogeny Output: Efficient Listing of Representative Reconciliations}, booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI} 2021, August 2-4, 2021, Virtual Conference}, series = {LIPIcs}, volume = {201}, pages = {3:1--3:18}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2021}, url = {https://doi.org/10.4230/LIPIcs.WABI.2021.3}, doi = {10.4230/LIPICS.WABI.2021.3}, timestamp = {Wed, 06 Dec 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/WangMSS21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/WawerkaDR0021, author = {Marcin Wawerka and Dawid Dabkowski and Natalia Rutecka and Agnieszka Mykowiecka and Pawel G{\'{o}}recki}, editor = {Alessandra Carbone and Mohammed El{-}Kebir}, title = {Conflict Resolution Algorithms for Deep Coalescence Phylogenetic Networks}, booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI} 2021, August 2-4, 2021, Virtual Conference}, series = {LIPIcs}, volume = {201}, pages = {17:1--17:21}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2021}, url = {https://doi.org/10.4230/LIPIcs.WABI.2021.17}, doi = {10.4230/LIPICS.WABI.2021.17}, timestamp = {Thu, 22 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/WawerkaDR0021.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Wickramarachchi21, author = {Anuradha Wickramarachchi and Yu Lin}, editor = {Alessandra Carbone and Mohammed El{-}Kebir}, title = {LRBinner: Binning Long Reads in Metagenomics Datasets}, booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI} 2021, August 2-4, 2021, Virtual Conference}, series = {LIPIcs}, volume = {201}, pages = {11:1--11:18}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2021}, url = {https://doi.org/10.4230/LIPIcs.WABI.2021.11}, doi = {10.4230/LIPICS.WABI.2021.11}, timestamp = {Fri, 08 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Wickramarachchi21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/WilliamsTM21, author = {Lucia Williams and Alexandru I. Tomescu and Brendan Mumey}, editor = {Alessandra Carbone and Mohammed El{-}Kebir}, title = {Flow Decomposition with Subpath Constraints}, booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI} 2021, August 2-4, 2021, Virtual Conference}, series = {LIPIcs}, volume = {201}, pages = {16:1--16:15}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2021}, url = {https://doi.org/10.4230/LIPIcs.WABI.2021.16}, doi = {10.4230/LIPICS.WABI.2021.16}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/WilliamsTM21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/X21, editor = {Alessandra Carbone and Mohammed El{-}Kebir}, title = {Front Matter, Table of Contents, Preface, Conference Organization}, booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI} 2021, August 2-4, 2021, Virtual Conference}, series = {LIPIcs}, volume = {201}, pages = {0:1--0:10}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2021}, url = {https://doi.org/10.4230/LIPIcs.WABI.2021.0}, doi = {10.4230/LIPICS.WABI.2021.0}, timestamp = {Thu, 22 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/X21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ZeiraMR21, author = {Ron Zeira and Geoffrey Mon and Benjamin J. Raphael}, editor = {Alessandra Carbone and Mohammed El{-}Kebir}, title = {Genome Halving and Aliquoting Under the Copy Number Distance}, booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI} 2021, August 2-4, 2021, Virtual Conference}, series = {LIPIcs}, volume = {201}, pages = {18:1--18:25}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2021}, url = {https://doi.org/10.4230/LIPIcs.WABI.2021.18}, doi = {10.4230/LIPICS.WABI.2021.18}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/ZeiraMR21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/wabi/2021, editor = {Alessandra Carbone and Mohammed El{-}Kebir}, title = {21st International Workshop on Algorithms in Bioinformatics, {WABI} 2021, August 2-4, 2021, Virtual Conference}, series = {LIPIcs}, volume = {201}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2021}, url = {https://www.dagstuhl.de/dagpub/978-3-95977-200-6}, isbn = {978-3-95977-200-6}, timestamp = {Wed, 21 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/2021.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/CantoneFP20, author = {Domenico Cantone and Simone Faro and Arianna Pavone}, editor = {Carl Kingsford and Nadia Pisanti}, title = {Sequence Searching Allowing for Non-Overlapping Adjacent Unbalanced Translocations}, booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI} 2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)}, series = {LIPIcs}, volume = {172}, pages = {19:1--19:14}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2020}, url = {https://doi.org/10.4230/LIPIcs.WABI.2020.19}, doi = {10.4230/LIPICS.WABI.2020.19}, timestamp = {Wed, 21 Aug 2024 22:46:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/CantoneFP20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DufresneSMLCC20, author = {Yoann Dufresne and Chen Sun and Pierre Marijon and Dominique Lavenier and C{\'{e}}dric Chauve and Rayan Chikhi}, editor = {Carl Kingsford and Nadia Pisanti}, title = {A Graph-Theoretic Barcode Ordering Model for Linked-Reads}, booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI} 2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)}, series = {LIPIcs}, volume = {172}, pages = {11:1--11:17}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2020}, url = {https://doi.org/10.4230/LIPIcs.WABI.2020.11}, doi = {10.4230/LIPICS.WABI.2020.11}, timestamp = {Sat, 06 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/DufresneSMLCC20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/FrisbyL20, author = {Trevor S. Frisby and Christopher J. Langmead}, editor = {Carl Kingsford and Nadia Pisanti}, title = {Fold Family-Regularized Bayesian Optimization for Directed Protein Evolution}, booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI} 2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)}, series = {LIPIcs}, volume = {172}, pages = {18:1--18:17}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2020}, url = {https://doi.org/10.4230/LIPIcs.WABI.2020.18}, doi = {10.4230/LIPICS.WABI.2020.18}, timestamp = {Wed, 19 May 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/FrisbyL20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GaneshS20, author = {Arun Ganesh and Aaron Sy}, editor = {Carl Kingsford and Nadia Pisanti}, title = {Near-Linear Time Edit Distance for Indel Channels}, booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI} 2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)}, series = {LIPIcs}, volume = {172}, pages = {17:1--17:18}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2020}, url = {https://doi.org/10.4230/LIPIcs.WABI.2020.17}, doi = {10.4230/LIPICS.WABI.2020.17}, timestamp = {Wed, 26 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/GaneshS20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GatterLDHS20, author = {Thomas Gatter and Sarah von L{\"{o}}hneysen and Polina Drozdova and Tom Hartmann and Peter F. Stadler}, editor = {Carl Kingsford and Nadia Pisanti}, title = {Economic Genome Assembly from Low Coverage Illumina and Nanopore Data}, booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI} 2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)}, series = {LIPIcs}, volume = {172}, pages = {10:1--10:22}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2020}, url = {https://doi.org/10.4230/LIPIcs.WABI.2020.10}, doi = {10.4230/LIPICS.WABI.2020.10}, timestamp = {Thu, 16 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/GatterLDHS20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/JahnBZ20, author = {Katharina Jahn and Niko Beerenwinkel and Louxin Zhang}, editor = {Carl Kingsford and Nadia Pisanti}, title = {The Bourque Distances for Mutation Trees of Cancers}, booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI} 2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)}, series = {LIPIcs}, volume = {172}, pages = {14:1--14:22}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2020}, url = {https://doi.org/10.4230/LIPIcs.WABI.2020.14}, doi = {10.4230/LIPICS.WABI.2020.14}, timestamp = {Thu, 09 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/JahnBZ20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MaZK20, author = {Cong Ma and Hongyu Zheng and Carl Kingsford}, editor = {Carl Kingsford and Nadia Pisanti}, title = {Exact Transcript Quantification Over Splice Graphs}, booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI} 2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)}, series = {LIPIcs}, volume = {172}, pages = {12:1--12:18}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2020}, url = {https://doi.org/10.4230/LIPIcs.WABI.2020.12}, doi = {10.4230/LIPICS.WABI.2020.12}, timestamp = {Wed, 22 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MaZK20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MakinenCENT20, author = {Veli M{\"{a}}kinen and Bastien Cazaux and Massimo Equi and Tuukka Norri and Alexandru I. Tomescu}, editor = {Carl Kingsford and Nadia Pisanti}, title = {Linear Time Construction of Indexable Founder Block Graphs}, booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI} 2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)}, series = {LIPIcs}, volume = {172}, pages = {7:1--7:18}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2020}, url = {https://doi.org/10.4230/LIPIcs.WABI.2020.7}, doi = {10.4230/LIPICS.WABI.2020.7}, timestamp = {Thu, 16 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MakinenCENT20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Mallawaarachchi20, author = {Vijini Mallawaarachchi and Anuradha Wickramarachchi and Yu Lin}, editor = {Carl Kingsford and Nadia Pisanti}, title = {GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs}, booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI} 2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)}, series = {LIPIcs}, volume = {172}, pages = {8:1--8:21}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2020}, url = {https://doi.org/10.4230/LIPIcs.WABI.2020.8}, doi = {10.4230/LIPICS.WABI.2020.8}, timestamp = {Thu, 16 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Mallawaarachchi20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Mukherjee0SB20, author = {Kingshuk Mukherjee and Massimiliano Rossi and Leena Salmela and Christina Boucher}, editor = {Carl Kingsford and Nadia Pisanti}, title = {Fast and Efficient Rmap Assembly Using the Bi-Labelled de Bruijn Graph}, booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI} 2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)}, series = {LIPIcs}, volume = {172}, pages = {9:1--9:16}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2020}, url = {https://doi.org/10.4230/LIPIcs.WABI.2020.9}, doi = {10.4230/LIPICS.WABI.2020.9}, timestamp = {Mon, 10 Jun 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Mukherjee0SB20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/RahmanCM20, author = {Amatur Rahman and Rayan Chikhi and Paul Medvedev}, editor = {Carl Kingsford and Nadia Pisanti}, title = {Disk Compression of k-mer Sets}, booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI} 2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)}, series = {LIPIcs}, volume = {172}, pages = {16:1--16:18}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2020}, url = {https://doi.org/10.4230/LIPIcs.WABI.2020.16}, doi = {10.4230/LIPICS.WABI.2020.16}, timestamp = {Wed, 26 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/RahmanCM20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/RubertMB20, author = {Diego P. Rubert and F{\'{a}}bio Viduani Martinez and Mar{\'{\i}}lia D. V. Braga}, editor = {Carl Kingsford and Nadia Pisanti}, title = {Natural Family-Free Genomic Distance}, booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI} 2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)}, series = {LIPIcs}, volume = {172}, pages = {3:1--3:23}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2020}, url = {https://doi.org/10.4230/LIPIcs.WABI.2020.3}, doi = {10.4230/LIPICS.WABI.2020.3}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/RubertMB20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SchrinnerGWSSK20, author = {Sven Schrinner and Manish Goel and Michael Wulfert and Philipp Spohr and Korbinian Schneeberger and Gunnar W. Klau}, editor = {Carl Kingsford and Nadia Pisanti}, title = {The Longest Run Subsequence Problem}, booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI} 2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)}, series = {LIPIcs}, volume = {172}, pages = {6:1--6:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2020}, url = {https://doi.org/10.4230/LIPIcs.WABI.2020.6}, doi = {10.4230/LIPICS.WABI.2020.6}, timestamp = {Thu, 16 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SchrinnerGWSSK20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SelbachKGBM20, author = {Leonie Selbach and Tobias Kowalski and Klaus Gerwert and Maike Buchin and Axel Mosig}, editor = {Carl Kingsford and Nadia Pisanti}, title = {Shape Decomposition Algorithms for Laser Capture Microdissection}, booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI} 2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)}, series = {LIPIcs}, volume = {172}, pages = {13:1--13:17}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2020}, url = {https://doi.org/10.4230/LIPIcs.WABI.2020.13}, doi = {10.4230/LIPICS.WABI.2020.13}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SelbachKGBM20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/WeberE20, author = {Leah L. Weber and Mohammed El{-}Kebir}, editor = {Carl Kingsford and Nadia Pisanti}, title = {Phyolin: Identifying a Linear Perfect Phylogeny in Single-Cell {DNA} Sequencing Data of Tumors}, booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI} 2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)}, series = {LIPIcs}, volume = {172}, pages = {5:1--5:14}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2020}, url = {https://doi.org/10.4230/LIPIcs.WABI.2020.5}, doi = {10.4230/LIPICS.WABI.2020.5}, timestamp = {Wed, 26 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/WeberE20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/X20, editor = {Carl Kingsford and Nadia Pisanti}, title = {Front Matter, Table of Contents, Preface, Conference Organization}, booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI} 2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)}, series = {LIPIcs}, volume = {172}, pages = {0:1--0:10}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2020}, url = {https://doi.org/10.4230/LIPIcs.WABI.2020.0}, doi = {10.4230/LIPICS.WABI.2020.0}, timestamp = {Wed, 26 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/X20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/YuLCMW20, author = {Xilin Yu and Thien Le and Sarah A. Christensen and Erin K. Molloy and Tandy J. Warnow}, editor = {Carl Kingsford and Nadia Pisanti}, title = {Advancing Divide-And-Conquer Phylogeny Estimation Using Robinson-Foulds Supertrees}, booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI} 2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)}, series = {LIPIcs}, volume = {172}, pages = {15:1--15:17}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2020}, url = {https://doi.org/10.4230/LIPIcs.WABI.2020.15}, doi = {10.4230/LIPICS.WABI.2020.15}, timestamp = {Thu, 16 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/YuLCMW20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ZabetiDSSLC20, author = {Hooman Zabeti and Nick C. Dexter and Amir Hosein Safari and Nafiseh Sedaghat and Maxwell W. Libbrecht and Leonid Chindelevitch}, editor = {Carl Kingsford and Nadia Pisanti}, title = {An Interpretable Classification Method for Predicting Drug Resistance in M. Tuberculosis}, booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI} 2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)}, series = {LIPIcs}, volume = {172}, pages = {2:1--2:18}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2020}, url = {https://doi.org/10.4230/LIPIcs.WABI.2020.2}, doi = {10.4230/LIPICS.WABI.2020.2}, timestamp = {Mon, 19 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ZabetiDSSLC20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ZentgrafR20, author = {Jens Zentgraf and Sven Rahmann}, editor = {Carl Kingsford and Nadia Pisanti}, title = {Fast Lightweight Accurate Xenograft Sorting}, booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI} 2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)}, series = {LIPIcs}, volume = {172}, pages = {4:1--4:16}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2020}, url = {https://doi.org/10.4230/LIPIcs.WABI.2020.4}, doi = {10.4230/LIPICS.WABI.2020.4}, timestamp = {Thu, 16 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ZentgrafR20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ZimermanSZZ20, author = {Galia R. Zimerman and Dina Svetlitsky and Meirav Zehavi and Michal Ziv{-}Ukelson}, editor = {Carl Kingsford and Nadia Pisanti}, title = {Approximate Search for Known Gene Clusters in New Genomes Using PQ-Trees}, booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI} 2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)}, series = {LIPIcs}, volume = {172}, pages = {1:1--1:24}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2020}, url = {https://doi.org/10.4230/LIPIcs.WABI.2020.1}, doi = {10.4230/LIPICS.WABI.2020.1}, timestamp = {Wed, 26 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ZimermanSZZ20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/wabi/2020, editor = {Carl Kingsford and Nadia Pisanti}, title = {20th International Workshop on Algorithms in Bioinformatics, {WABI} 2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)}, series = {LIPIcs}, volume = {172}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2020}, url = {https://www.dagstuhl.de/dagpub/978-3-95977-161-0}, isbn = {978-3-95977-161-0}, timestamp = {Wed, 21 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/2020.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/AlankoBCPS19, author = {Jarno Alanko and Hideo Bannai and Bastien Cazaux and Pierre Peterlongo and Jens Stoye}, editor = {Katharina T. Huber and Dan Gusfield}, title = {Finding All Maximal Perfect Haplotype Blocks in Linear Time}, booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI} 2019, September 8-10, 2019, Niagara Falls, NY, {USA}}, series = {LIPIcs}, volume = {143}, pages = {8:1--8:9}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.WABI.2019.8}, doi = {10.4230/LIPICS.WABI.2019.8}, timestamp = {Wed, 21 Aug 2024 22:46:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/AlankoBCPS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/CaoZN19, author = {Zhen Cao and Jiafan Zhu and Luay Nakhleh}, editor = {Katharina T. Huber and Dan Gusfield}, title = {Empirical Performance of Tree-Based Inference of Phylogenetic Networks}, booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI} 2019, September 8-10, 2019, Niagara Falls, NY, {USA}}, series = {LIPIcs}, volume = {143}, pages = {21:1--21:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.WABI.2019.21}, doi = {10.4230/LIPICS.WABI.2019.21}, timestamp = {Mon, 23 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/CaoZN19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/CauerYVVN19, author = {Alexandra Gesine Cauer and G{\"{u}}rkan Yardimci and Jean{-}Philippe Vert and Nelle Varoquaux and William Stafford Noble}, editor = {Katharina T. Huber and Dan Gusfield}, title = {Inferring Diploid 3D Chromatin Structures from Hi-C Data}, booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI} 2019, September 8-10, 2019, Niagara Falls, NY, {USA}}, series = {LIPIcs}, volume = {143}, pages = {11:1--11:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.WABI.2019.11}, doi = {10.4230/LIPICS.WABI.2019.11}, timestamp = {Sun, 06 Oct 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/CauerYVVN19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ChristensenMVW19, author = {Sarah A. Christensen and Erin K. Molloy and Pranjal Vachaspati and Tandy J. Warnow}, editor = {Katharina T. Huber and Dan Gusfield}, title = {{TRACTION:} Fast Non-Parametric Improvement of Estimated Gene Trees}, booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI} 2019, September 8-10, 2019, Niagara Falls, NY, {USA}}, series = {LIPIcs}, volume = {143}, pages = {4:1--4:16}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.WABI.2019.4}, doi = {10.4230/LIPICS.WABI.2019.4}, timestamp = {Mon, 12 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ChristensenMVW19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Clement19, author = {Nathan L. Clement}, editor = {Katharina T. Huber and Dan Gusfield}, title = {Quantified Uncertainty of Flexible Protein-Protein Docking Algorithms}, booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI} 2019, September 8-10, 2019, Niagara Falls, NY, {USA}}, series = {LIPIcs}, volume = {143}, pages = {3:1--3:12}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.WABI.2019.3}, doi = {10.4230/LIPICS.WABI.2019.3}, timestamp = {Tue, 03 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Clement19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/EdrisiZN19, author = {Mohammad Amin Edrisi and Hamim Zafar and Luay Nakhleh}, editor = {Katharina T. Huber and Dan Gusfield}, title = {A Combinatorial Approach for Single-cell Variant Detection via Phylogenetic Inference}, booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI} 2019, September 8-10, 2019, Niagara Falls, NY, {USA}}, series = {LIPIcs}, volume = {143}, pages = {22:1--22:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.WABI.2019.22}, doi = {10.4230/LIPICS.WABI.2019.22}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/EdrisiZN19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GeorgievDC19, author = {Georgi D. Georgiev and Kevin F. Dodd and Brian Y. Chen}, editor = {Katharina T. Huber and Dan Gusfield}, title = {pClay: {A} Precise Parallel Algorithm for Comparing Molecular Surfaces}, booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI} 2019, September 8-10, 2019, Niagara Falls, NY, {USA}}, series = {LIPIcs}, volume = {143}, pages = {6:1--6:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.WABI.2019.6}, doi = {10.4230/LIPICS.WABI.2019.6}, timestamp = {Tue, 03 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/GeorgievDC19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/JainZDA19, author = {Chirag Jain and Haowen Zhang and Alexander T. Dilthey and Srinivas Aluru}, editor = {Katharina T. Huber and Dan Gusfield}, title = {Validating Paired-End Read Alignments in Sequence Graphs}, booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI} 2019, September 8-10, 2019, Niagara Falls, NY, {USA}}, series = {LIPIcs}, volume = {143}, pages = {17:1--17:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.WABI.2019.17}, doi = {10.4230/LIPICS.WABI.2019.17}, timestamp = {Mon, 09 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/JainZDA19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/JanssonMP19, author = {Jesper Jansson and Konstantinos Mampentzidis and Sandhya T. P.}, editor = {Katharina T. Huber and Dan Gusfield}, title = {Building a Small and Informative Phylogenetic Supertree}, booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI} 2019, September 8-10, 2019, Niagara Falls, NY, {USA}}, series = {LIPIcs}, volume = {143}, pages = {1:1--1:14}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.WABI.2019.1}, doi = {10.4230/LIPICS.WABI.2019.1}, timestamp = {Wed, 24 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/JanssonMP19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KavyaSS19, author = {Naga Sai Kavya Vaddadi and Rajgopal Srinivasan and Naveen Sivadasan}, editor = {Katharina T. Huber and Dan Gusfield}, title = {Read Mapping on Genome Variation Graphs}, booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI} 2019, September 8-10, 2019, Niagara Falls, NY, {USA}}, series = {LIPIcs}, volume = {143}, pages = {7:1--7:17}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.WABI.2019.7}, doi = {10.4230/LIPICS.WABI.2019.7}, timestamp = {Wed, 18 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/KavyaSS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LiuHSVN19, author = {Jie Liu and Yuanhao Huang and Ritambhara Singh and Jean{-}Philippe Vert and William Stafford Noble}, editor = {Katharina T. Huber and Dan Gusfield}, title = {Jointly Embedding Multiple Single-Cell Omics Measurements}, booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI} 2019, September 8-10, 2019, Niagara Falls, NY, {USA}}, series = {LIPIcs}, volume = {143}, pages = {10:1--10:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.WABI.2019.10}, doi = {10.4230/LIPICS.WABI.2019.10}, timestamp = {Mon, 23 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LiuHSVN19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MarkinE19, author = {Alexey Markin and Oliver Eulenstein}, editor = {Katharina T. Huber and Dan Gusfield}, title = {Consensus Clusters in Robinson-Foulds Reticulation Networks}, booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI} 2019, September 8-10, 2019, Niagara Falls, NY, {USA}}, series = {LIPIcs}, volume = {143}, pages = {12:1--12:12}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.WABI.2019.12}, doi = {10.4230/LIPICS.WABI.2019.12}, timestamp = {Mon, 23 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MarkinE19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MiladiRWB19, author = {Milad Miladi and Martin Raden and Sebastian Will and Rolf Backofen}, editor = {Katharina T. Huber and Dan Gusfield}, title = {Fast and Accurate Structure Probability Estimation for Simultaneous Alignment and Folding of RNAs}, booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI} 2019, September 8-10, 2019, Niagara Falls, NY, {USA}}, series = {LIPIcs}, volume = {143}, pages = {14:1--14:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.WABI.2019.14}, doi = {10.4230/LIPICS.WABI.2019.14}, timestamp = {Mon, 23 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MiladiRWB19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/PolevikovK19, author = {Evgeny Polevikov and Mikhail Kolmogorov}, editor = {Katharina T. Huber and Dan Gusfield}, title = {Synteny Paths for Assembly Graphs Comparison}, booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI} 2019, September 8-10, 2019, Niagara Falls, NY, {USA}}, series = {LIPIcs}, volume = {143}, pages = {24:1--24:14}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.WABI.2019.24}, doi = {10.4230/LIPICS.WABI.2019.24}, timestamp = {Mon, 23 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/PolevikovK19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/QiuMXK19, author = {Yutong Qiu and Cong Ma and Han Xie and Carl Kingsford}, editor = {Katharina T. Huber and Dan Gusfield}, title = {Detecting Transcriptomic Structural Variants in Heterogeneous Contexts via the Multiple Compatible Arrangements Problem}, booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI} 2019, September 8-10, 2019, Niagara Falls, NY, {USA}}, series = {LIPIcs}, volume = {143}, pages = {18:1--18:19}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.WABI.2019.18}, doi = {10.4230/LIPICS.WABI.2019.18}, timestamp = {Tue, 03 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/QiuMXK19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SauerwaldSK19, author = {Natalie Sauerwald and Yihang Shen and Carl Kingsford}, editor = {Katharina T. Huber and Dan Gusfield}, title = {Topological Data Analysis Reveals Principles of Chromosome Structure in Cellular Differentiation}, booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI} 2019, September 8-10, 2019, Niagara Falls, NY, {USA}}, series = {LIPIcs}, volume = {143}, pages = {23:1--23:16}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.WABI.2019.23}, doi = {10.4230/LIPICS.WABI.2019.23}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SauerwaldSK19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SimonaitisCS19, author = {Pijus Simonaitis and Annie Chateau and Krister M. Swenson}, editor = {Katharina T. Huber and Dan Gusfield}, title = {Weighted Minimum-Length Rearrangement Scenarios}, booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI} 2019, September 8-10, 2019, Niagara Falls, NY, {USA}}, series = {LIPIcs}, volume = {143}, pages = {13:1--13:17}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.WABI.2019.13}, doi = {10.4230/LIPICS.WABI.2019.13}, timestamp = {Mon, 23 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SimonaitisCS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Tiskin19, author = {Alexander Tiskin}, editor = {Katharina T. Huber and Dan Gusfield}, title = {Bounded-Length Smith-Waterman Alignment}, booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI} 2019, September 8-10, 2019, Niagara Falls, NY, {USA}}, series = {LIPIcs}, volume = {143}, pages = {16:1--16:12}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.WABI.2019.16}, doi = {10.4230/LIPICS.WABI.2019.16}, timestamp = {Mon, 23 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Tiskin19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/TruszkowskiGS19, author = {Jakub Truszkowski and Olivier Gascuel and Krister M. Swenson}, editor = {Katharina T. Huber and Dan Gusfield}, title = {Rapidly Computing the Phylogenetic Transfer Index}, booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI} 2019, September 8-10, 2019, Niagara Falls, NY, {USA}}, series = {LIPIcs}, volume = {143}, pages = {20:1--20:12}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.WABI.2019.20}, doi = {10.4230/LIPICS.WABI.2019.20}, timestamp = {Mon, 23 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/TruszkowskiGS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/WangELT19, author = {Qi Wang and Ryan A. Leo Elworth and Tian{-}Rui Liu and Todd J. Treangen}, editor = {Katharina T. Huber and Dan Gusfield}, title = {Faster Pan-Genome Construction for Efficient Differentiation of Naturally Occurring and Engineered Plasmids with Plaster}, booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI} 2019, September 8-10, 2019, Niagara Falls, NY, {USA}}, series = {LIPIcs}, volume = {143}, pages = {19:1--19:12}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.WABI.2019.19}, doi = {10.4230/LIPICS.WABI.2019.19}, timestamp = {Sat, 13 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/WangELT19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Wittler19, author = {Roland Wittler}, editor = {Katharina T. Huber and Dan Gusfield}, title = {Alignment- and Reference-Free Phylogenomics with Colored de Bruijn Graphs}, booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI} 2019, September 8-10, 2019, Niagara Falls, NY, {USA}}, series = {LIPIcs}, volume = {143}, pages = {2:1--2:14}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.WABI.2019.2}, doi = {10.4230/LIPICS.WABI.2019.2}, timestamp = {Mon, 23 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Wittler19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/X19, editor = {Katharina T. Huber and Dan Gusfield}, title = {Front Matter, Table of Contents, Preface, Conference Organization}, booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI} 2019, September 8-10, 2019, Niagara Falls, NY, {USA}}, series = {LIPIcs}, volume = {143}, pages = {0:1--0:12}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.WABI.2019.0}, doi = {10.4230/LIPICS.WABI.2019.0}, timestamp = {Tue, 03 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/X19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/XinSK19, author = {Hongyi Xin and Mingfu Shao and Carl Kingsford}, editor = {Katharina T. Huber and Dan Gusfield}, title = {Context-Aware Seeds for Read Mapping}, booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI} 2019, September 8-10, 2019, Niagara Falls, NY, {USA}}, series = {LIPIcs}, volume = {143}, pages = {15:1--15:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.WABI.2019.15}, doi = {10.4230/LIPICS.WABI.2019.15}, timestamp = {Tue, 03 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/XinSK19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/YamadaCW19, author = {Kohei Yamada and Zhi{-}Zhong Chen and Lusheng Wang}, editor = {Katharina T. Huber and Dan Gusfield}, title = {Better Practical Algorithms for rSPR Distance and Hybridization Number}, booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI} 2019, September 8-10, 2019, Niagara Falls, NY, {USA}}, series = {LIPIcs}, volume = {143}, pages = {5:1--5:12}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.WABI.2019.5}, doi = {10.4230/LIPICS.WABI.2019.5}, timestamp = {Mon, 10 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/YamadaCW19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ZollerZZ19, author = {Roni Zoller and Meirav Zehavi and Michal Ziv{-}Ukelson}, editor = {Katharina T. Huber and Dan Gusfield}, title = {A New Paradigm for Identifying Reconciliation-Scenario Altering Mutations Conferring Environmental Adaptation}, booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI} 2019, September 8-10, 2019, Niagara Falls, NY, {USA}}, series = {LIPIcs}, volume = {143}, pages = {9:1--9:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.WABI.2019.9}, doi = {10.4230/LIPICS.WABI.2019.9}, timestamp = {Tue, 03 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ZollerZZ19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/wabi/2019, editor = {Katharina T. Huber and Dan Gusfield}, title = {19th International Workshop on Algorithms in Bioinformatics, {WABI} 2019, September 8-10, 2019, Niagara Falls, NY, {USA}}, series = {LIPIcs}, volume = {143}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {http://www.dagstuhl.de/dagpub/978-3-95977-123-8}, isbn = {978-3-95977-123-8}, timestamp = {Wed, 21 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/2019.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/AlzamelA0GIPPR18, author = {Mai Alzamel and Lorraine A. K. Ayad and Giulia Bernardini and Roberto Grossi and Costas S. Iliopoulos and Nadia Pisanti and Solon P. Pissis and Giovanna Rosone}, editor = {Laxmi Parida and Esko Ukkonen}, title = {Degenerate String Comparison and Applications}, booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI} 2018, August 20-22, 2018, Helsinki, Finland}, series = {LIPIcs}, volume = {113}, pages = {21:1--21:14}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2018}, url = {https://doi.org/10.4230/LIPIcs.WABI.2018.21}, doi = {10.4230/LIPICS.WABI.2018.21}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/AlzamelA0GIPPR18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BasuUP18, author = {Saugata Basu and Filippo Utro and Laxmi Parida}, editor = {Laxmi Parida and Esko Ukkonen}, title = {Essential Simplices in Persistent Homology and Subtle Admixture Detection}, booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI} 2018, August 20-22, 2018, Helsinki, Finland}, series = {LIPIcs}, volume = {113}, pages = {14:1--14:10}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2018}, url = {https://doi.org/10.4230/LIPIcs.WABI.2018.14}, doi = {10.4230/LIPICS.WABI.2018.14}, timestamp = {Mon, 16 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BasuUP18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BoucherGKM18, author = {Christina Boucher and Travis Gagie and Alan Kuhnle and Giovanni Manzini}, editor = {Laxmi Parida and Esko Ukkonen}, title = {Prefix-Free Parsing for Building Big BWTs}, booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI} 2018, August 20-22, 2018, Helsinki, Finland}, series = {LIPIcs}, volume = {113}, pages = {2:1--2:16}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2018}, url = {https://doi.org/10.4230/LIPIcs.WABI.2018.2}, doi = {10.4230/LIPICS.WABI.2018.2}, timestamp = {Mon, 10 Jun 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BoucherGKM18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ChretienGM18, author = {St{\'{e}}phane Chr{\'{e}}tien and Christophe Guyeux and Serge Moulin}, editor = {Laxmi Parida and Esko Ukkonen}, title = {l1-Penalised Ordinal Polytomous Regression Estimators with Application to Gene Expression Studies}, booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI} 2018, August 20-22, 2018, Helsinki, Finland}, series = {LIPIcs}, volume = {113}, pages = {17:1--17:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2018}, url = {https://doi.org/10.4230/LIPIcs.WABI.2018.17}, doi = {10.4230/LIPICS.WABI.2018.17}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ChretienGM18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DeyM18, author = {Tamal K. Dey and Sayan Mandal}, editor = {Laxmi Parida and Esko Ukkonen}, title = {Protein Classification with Improved Topological Data Analysis}, booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI} 2018, August 20-22, 2018, Helsinki, Finland}, series = {LIPIcs}, volume = {113}, pages = {6:1--6:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2018}, url = {https://doi.org/10.4230/LIPIcs.WABI.2018.6}, doi = {10.4230/LIPICS.WABI.2018.6}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DeyM18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DondiLS18, author = {Riccardo Dondi and Manuel Lafond and C{\'{e}}line Scornavacca}, editor = {Laxmi Parida and Esko Ukkonen}, title = {Reconciling Multiple Genes Trees via Segmental Duplications and Losses}, booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI} 2018, August 20-22, 2018, Helsinki, Finland}, series = {LIPIcs}, volume = {113}, pages = {5:1--5:16}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2018}, url = {https://doi.org/10.4230/LIPIcs.WABI.2018.5}, doi = {10.4230/LIPICS.WABI.2018.5}, timestamp = {Thu, 23 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DondiLS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DuhrkopLWB18, author = {Kai D{\"{u}}hrkop and Marie Anne Lataretu and W. Timothy J. White and Sebastian B{\"{o}}cker}, editor = {Laxmi Parida and Esko Ukkonen}, title = {Heuristic Algorithms for the Maximum Colorful Subtree Problem}, booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI} 2018, August 20-22, 2018, Helsinki, Finland}, series = {LIPIcs}, volume = {113}, pages = {23:1--23:14}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2018}, url = {https://doi.org/10.4230/LIPIcs.WABI.2018.23}, doi = {10.4230/LIPICS.WABI.2018.23}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DuhrkopLWB18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/EgidiLMT18, author = {Lavinia Egidi and Felipe A. Louza and Giovanni Manzini and Guilherme P. Telles}, editor = {Laxmi Parida and Esko Ukkonen}, title = {External memory {BWT} and {LCP} computation for sequence collections with applications}, booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI} 2018, August 20-22, 2018, Helsinki, Finland}, series = {LIPIcs}, volume = {113}, pages = {10:1--10:14}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2018}, url = {https://doi.org/10.4230/LIPIcs.WABI.2018.10}, doi = {10.4230/LIPICS.WABI.2018.10}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/EgidiLMT18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/El-Kebir18, author = {Mohammed El{-}Kebir}, editor = {Laxmi Parida and Esko Ukkonen}, title = {Parsimonious Migration History Problem: Complexity and Algorithms}, booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI} 2018, August 20-22, 2018, Helsinki, Finland}, series = {LIPIcs}, volume = {113}, pages = {24:1--24:14}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2018}, url = {https://doi.org/10.4230/LIPIcs.WABI.2018.24}, doi = {10.4230/LIPICS.WABI.2018.24}, timestamp = {Wed, 25 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/El-Kebir18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ElworthABDN18, author = {Ryan A. Leo Elworth and Chabrielle Allen and Travis Benedict and Peter Dulworth and Luay Nakhleh}, editor = {Laxmi Parida and Esko Ukkonen}, title = {{DGEN:} {A} Test Statistic for Detection of General Introgression Scenarios}, booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI} 2018, August 20-22, 2018, Helsinki, Finland}, series = {LIPIcs}, volume = {113}, pages = {19:1--19:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2018}, url = {https://doi.org/10.4230/LIPIcs.WABI.2018.19}, doi = {10.4230/LIPICS.WABI.2018.19}, timestamp = {Thu, 23 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ElworthABDN18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/EnglerCVGMK18, author = {Martin S. Engler and Bertrand Caron and Lourens E. Veen and Daan P. Geerke and Alan E. Mark and Gunnar W. Klau}, editor = {Laxmi Parida and Esko Ukkonen}, title = {Multiple-Choice Knapsack for Assigning Partial Atomic Charges in Drug-Like Molecules}, booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI} 2018, August 20-22, 2018, Helsinki, Finland}, series = {LIPIcs}, volume = {113}, pages = {16:1--16:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2018}, url = {https://doi.org/10.4230/LIPIcs.WABI.2018.16}, doi = {10.4230/LIPICS.WABI.2018.16}, timestamp = {Sun, 24 Jul 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/EnglerCVGMK18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HajkarimUV18, author = {Morteza Chalabi Hajkarim and Eli Upfal and Fabio Vandin}, editor = {Laxmi Parida and Esko Ukkonen}, title = {Differentially Mutated Subnetworks Discovery}, booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI} 2018, August 20-22, 2018, Helsinki, Finland}, series = {LIPIcs}, volume = {113}, pages = {18:1--18:14}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2018}, url = {https://doi.org/10.4230/LIPIcs.WABI.2018.18}, doi = {10.4230/LIPICS.WABI.2018.18}, timestamp = {Mon, 16 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HajkarimUV18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HartmannR18, author = {Till Hartmann and Sven Rahmann}, editor = {Laxmi Parida and Esko Ukkonen}, title = {Spalter: {A} Meta Machine Learning Approach to Distinguish True {DNA} Variants from Sequencing Artefacts}, booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI} 2018, August 20-22, 2018, Helsinki, Finland}, series = {LIPIcs}, volume = {113}, pages = {13:1--13:8}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2018}, url = {https://doi.org/10.4230/LIPIcs.WABI.2018.13}, doi = {10.4230/LIPICS.WABI.2018.13}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HartmannR18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KarpovMRS18, author = {Nikolai Karpov and Salem Malikic and Md. Khaledur Rahman and S{\"{u}}leyman Cenk Sahinalp}, editor = {Laxmi Parida and Esko Ukkonen}, title = {A Multi-labeled Tree Edit Distance for Comparing "Clonal Trees" of Tumor Progression}, booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI} 2018, August 20-22, 2018, Helsinki, Finland}, series = {LIPIcs}, volume = {113}, pages = {22:1--22:19}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2018}, url = {https://doi.org/10.4230/LIPIcs.WABI.2018.22}, doi = {10.4230/LIPICS.WABI.2018.22}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/KarpovMRS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MajewskiCSNMG18, author = {Szymon Majewski and Michal Aleksander Ciach and Michal Startek and Wanda Niemyska and Blazej Miasojedow and Anna Gambin}, editor = {Laxmi Parida and Esko Ukkonen}, title = {The Wasserstein Distance as a Dissimilarity Measure for Mass Spectra with Application to Spectral Deconvolution}, booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI} 2018, August 20-22, 2018, Helsinki, Finland}, series = {LIPIcs}, volume = {113}, pages = {25:1--25:21}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2018}, url = {https://doi.org/10.4230/LIPIcs.WABI.2018.25}, doi = {10.4230/LIPICS.WABI.2018.25}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MajewskiCSNMG18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MansouriBVCC18, author = {Mehrdad Mansouri and Julian Booth and Margaryta Vityaz and C{\'{e}}dric Chauve and Leonid Chindelevitch}, editor = {Laxmi Parida and Esko Ukkonen}, title = {{PRINCE:} Accurate Approximation of the Copy Number of Tandem Repeats}, booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI} 2018, August 20-22, 2018, Helsinki, Finland}, series = {LIPIcs}, volume = {113}, pages = {20:1--20:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2018}, url = {https://doi.org/10.4230/LIPIcs.WABI.2018.20}, doi = {10.4230/LIPICS.WABI.2018.20}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/MansouriBVCC18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MuggliPB18, author = {Martin D. Muggli and Simon J. Puglisi and Christina Boucher}, editor = {Laxmi Parida and Esko Ukkonen}, title = {A Succinct Solution to Rmap Alignment}, booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI} 2018, August 20-22, 2018, Helsinki, Finland}, series = {LIPIcs}, volume = {113}, pages = {12:1--12:16}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2018}, url = {https://doi.org/10.4230/LIPIcs.WABI.2018.12}, doi = {10.4230/LIPICS.WABI.2018.12}, timestamp = {Mon, 10 Jun 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MuggliPB18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/NorriCKM18, author = {Tuukka Norri and Bastien Cazaux and Dmitry Kosolobov and Veli M{\"{a}}kinen}, editor = {Laxmi Parida and Esko Ukkonen}, title = {Minimum Segmentation for Pan-genomic Founder Reconstruction in Linear Time}, booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI} 2018, August 20-22, 2018, Helsinki, Finland}, series = {LIPIcs}, volume = {113}, pages = {15:1--15:15}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2018}, url = {https://doi.org/10.4230/LIPIcs.WABI.2018.15}, doi = {10.4230/LIPICS.WABI.2018.15}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/NorriCKM18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/PrezzaPSR18, author = {Nicola Prezza and Nadia Pisanti and Marinella Sciortino and Giovanna Rosone}, editor = {Laxmi Parida and Esko Ukkonen}, title = {Detecting Mutations by eBWT}, booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI} 2018, August 20-22, 2018, Helsinki, Finland}, series = {LIPIcs}, volume = {113}, pages = {3:1--3:15}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2018}, url = {https://doi.org/10.4230/LIPIcs.WABI.2018.3}, doi = {10.4230/LIPICS.WABI.2018.3}, timestamp = {Thu, 23 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/PrezzaPSR18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/RosenP18, author = {Yohei M. Rosen and Benedict J. Paten}, editor = {Laxmi Parida and Esko Ukkonen}, title = {An Average-Case Sublinear Exact Li and Stephens Forward Algorithm}, booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI} 2018, August 20-22, 2018, Helsinki, Finland}, series = {LIPIcs}, volume = {113}, pages = {9:1--9:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2018}, url = {https://doi.org/10.4230/LIPIcs.WABI.2018.9}, doi = {10.4230/LIPICS.WABI.2018.9}, timestamp = {Thu, 23 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/RosenP18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SirenGNPD18, author = {Jouni Sir{\'{e}}n and Erik Garrison and Adam M. Novak and Benedict Paten and Richard Durbin}, editor = {Laxmi Parida and Esko Ukkonen}, title = {Haplotype-aware graph indexes}, booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI} 2018, August 20-22, 2018, Helsinki, Finland}, series = {LIPIcs}, volume = {113}, pages = {4:1--4:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2018}, url = {https://doi.org/10.4230/LIPIcs.WABI.2018.4}, doi = {10.4230/LIPICS.WABI.2018.4}, timestamp = {Wed, 25 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SirenGNPD18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SternbergS18, author = {Barak Sternberg and Roded Sharan}, editor = {Laxmi Parida and Esko Ukkonen}, title = {A Dynamic Algorithm for Network Propagation}, booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI} 2018, August 20-22, 2018, Helsinki, Finland}, series = {LIPIcs}, volume = {113}, pages = {7:1--7:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2018}, url = {https://doi.org/10.4230/LIPIcs.WABI.2018.7}, doi = {10.4230/LIPICS.WABI.2018.7}, timestamp = {Thu, 23 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SternbergS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/WalveRS18, author = {Riku Walve and Pasi Rastas and Leena Salmela}, editor = {Laxmi Parida and Esko Ukkonen}, title = {Kermit: Guided Long Read Assembly using Coloured Overlap Graphs}, booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI} 2018, August 20-22, 2018, Helsinki, Finland}, series = {LIPIcs}, volume = {113}, pages = {11:1--11:11}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2018}, url = {https://doi.org/10.4230/LIPIcs.WABI.2018.11}, doi = {10.4230/LIPICS.WABI.2018.11}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/WalveRS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/X18, editor = {Laxmi Parida and Esko Ukkonen}, title = {Front Matter, Table of Contents, Preface, Conference Organization}, booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI} 2018, August 20-22, 2018, Helsinki, Finland}, series = {LIPIcs}, volume = {113}, pages = {0:i--0:xvi}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2018}, url = {https://doi.org/10.4230/LIPIcs.WABI.2018.0}, doi = {10.4230/LIPICS.WABI.2018.0}, timestamp = {Thu, 23 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/X18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ZabetiSBC18, author = {Hooman Zabeti and Tamon Stephen and Bonnie Berger and Leonid Chindelevitch}, editor = {Laxmi Parida and Esko Ukkonen}, title = {A Duality-Based Method for Identifying Elemental Balance Violations in Metabolic Network Models}, booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI} 2018, August 20-22, 2018, Helsinki, Finland}, series = {LIPIcs}, volume = {113}, pages = {1:1--1:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2018}, url = {https://doi.org/10.4230/LIPIcs.WABI.2018.1}, doi = {10.4230/LIPICS.WABI.2018.1}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/ZabetiSBC18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ZhangRW18, author = {Qiuyi (Richard) Zhang and Satish Rao and Tandy J. Warnow}, editor = {Laxmi Parida and Esko Ukkonen}, title = {New Absolute Fast Converging Phylogeny Estimation Methods with Improved Scalability and Accuracy}, booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI} 2018, August 20-22, 2018, Helsinki, Finland}, series = {LIPIcs}, volume = {113}, pages = {8:1--8:12}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2018}, url = {https://doi.org/10.4230/LIPIcs.WABI.2018.8}, doi = {10.4230/LIPICS.WABI.2018.8}, timestamp = {Thu, 23 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ZhangRW18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/wabi/2018, editor = {Laxmi Parida and Esko Ukkonen}, title = {18th International Workshop on Algorithms in Bioinformatics, {WABI} 2018, August 20-22, 2018, Helsinki, Finland}, series = {LIPIcs}, volume = {113}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2018}, url = {http://www.dagstuhl.de/dagpub/978-3-95977-082-8}, isbn = {978-3-95977-082-8}, timestamp = {Tue, 11 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/2018.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/AbramovaK17, author = {Anastasiia Abramova and Anton I. Korobeynikov}, editor = {Russell Schwartz and Knut Reinert}, title = {Assessing the Significance of Peptide Spectrum Match Scores}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {14:1--14:11}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.14}, doi = {10.4230/LIPICS.WABI.2017.14}, timestamp = {Wed, 04 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/AbramovaK17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/AlipanahiSPMB17, author = {Bahar Alipanahi and Leena Salmela and Simon J. Puglisi and Martin D. Muggli and Christina Boucher}, editor = {Russell Schwartz and Knut Reinert}, title = {Disentangled Long-Read De Bruijn Graphs via Optical Maps}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {1:1--1:14}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.1}, doi = {10.4230/LIPICS.WABI.2017.1}, timestamp = {Mon, 10 Jun 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/AlipanahiSPMB17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/AlmirantisCGIMP17, author = {Yannis Almirantis and Panagiotis Charalampopoulos and Jia Gao and Costas S. Iliopoulos and Manal Mohamed and Solon P. Pissis and Dimitris Polychronopoulos}, editor = {Russell Schwartz and Knut Reinert}, title = {Optimal Computation of Overabundant Words}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {4:1--4:14}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.4}, doi = {10.4230/LIPICS.WABI.2017.4}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/AlmirantisCGIMP17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/AlmodaresiPP17, author = {Fatemeh Almodaresi and Prashant Pandey and Rob Patro}, editor = {Russell Schwartz and Knut Reinert}, title = {Rainbowfish: {A} Succinct Colored de Bruijn Graph Representation}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {18:1--18:15}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.18}, doi = {10.4230/LIPICS.WABI.2017.18}, timestamp = {Mon, 22 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/AlmodaresiPP17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ArdakanyL17, author = {Abbas Roayaei Ardakany and Stefano Lonardi}, editor = {Russell Schwartz and Knut Reinert}, title = {Efficient and Accurate Detection of Topologically Associating Domains from Contact Maps}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {22:1--22:11}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.22}, doi = {10.4230/LIPICS.WABI.2017.22}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ArdakanyL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BayeganC17, author = {Amir H. Bayegan and Peter Clote}, editor = {Russell Schwartz and Knut Reinert}, title = {An {IP} Algorithm for {RNA} Folding Trajectories}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {6:1--6:16}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.6}, doi = {10.4230/LIPICS.WABI.2017.6}, timestamp = {Thu, 23 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BayeganC17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BayzidW17, author = {Md. Shamsuzzoha Bayzid and Tandy J. Warnow}, editor = {Russell Schwartz and Knut Reinert}, title = {Gene Tree Parsimony for Incomplete Gene Trees}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {2:1--2:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.2}, doi = {10.4230/LIPICS.WABI.2017.2}, timestamp = {Thu, 23 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BayzidW17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BrubachGPS17, author = {Brian Brubach and Jay Ghurye and Mihai Pop and Aravind Srinivasan}, editor = {Russell Schwartz and Knut Reinert}, title = {Better Greedy Sequence Clustering with Fast Banded Alignment}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {3:1--3:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.3}, doi = {10.4230/LIPICS.WABI.2017.3}, timestamp = {Thu, 23 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BrubachGPS17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ChristensenMVW17, author = {Sarah A. Christensen and Erin K. Molloy and Pranjal Vachaspati and Tandy J. Warnow}, editor = {Russell Schwartz and Knut Reinert}, title = {Optimal Completion of Incomplete Gene Trees in Polynomial Time Using {OCTAL}}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {27:1--27:14}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.27}, doi = {10.4230/LIPICS.WABI.2017.27}, timestamp = {Mon, 12 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ChristensenMVW17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/CiachMG17, author = {Michal Aleksander Ciach and Anna Muszewska and Pawel G{\'{o}}recki}, editor = {Russell Schwartz and Knut Reinert}, title = {Detecting Locus Acquisition Events in Gene Trees}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {5:1--5:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.5}, doi = {10.4230/LIPICS.WABI.2017.5}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/CiachMG17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/CrochemoreFPV17, author = {Maxime Crochemore and Alexandre P. Francisco and Solon P. Pissis and C{\'{a}}tia Vaz}, editor = {Russell Schwartz and Knut Reinert}, title = {Towards Distance-Based Phylogenetic Inference in Average-Case Linear-Time}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {9:1--9:14}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.9}, doi = {10.4230/LIPICS.WABI.2017.9}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/CrochemoreFPV17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/El-MabroukO17, author = {Nadia El{-}Mabrouk and A{\"{\i}}da Ouangraoua}, editor = {Russell Schwartz and Knut Reinert}, title = {A General Framework for Gene Tree Correction Based on Duplication-Loss Reconciliation}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {8:1--8:14}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.8}, doi = {10.4230/LIPICS.WABI.2017.8}, timestamp = {Thu, 23 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/El-MabroukO17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/FrankHTV17, author = {Yves Frank and Tomas Hruz and Thomas Tschager and Valentin Venzin}, editor = {Russell Schwartz and Knut Reinert}, title = {Improved De Novo Peptide Sequencing using {LC} Retention Time Information}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {26:1--26:17}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.26}, doi = {10.4230/LIPICS.WABI.2017.26}, timestamp = {Thu, 23 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/FrankHTV17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GirottoCP17, author = {Samuele Girotto and Matteo Comin and Cinzia Pizzi}, editor = {Russell Schwartz and Knut Reinert}, title = {Fast Spaced Seed Hashing}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {7:1--7:14}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.7}, doi = {10.4230/LIPICS.WABI.2017.7}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/GirottoCP17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GunadyCMB17, author = {Mohamed K. Gunady and Steffen Cornwell and Stephen M. Mount and H{\'{e}}ctor Corrada Bravo}, editor = {Russell Schwartz and Knut Reinert}, title = {Yanagi: Transcript Segment Library Construction for RNA-Seq Quantification}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {10:1--10:14}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.10}, doi = {10.4230/LIPICS.WABI.2017.10}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/GunadyCMB17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HuLQ17, author = {Chenyue W. Hu and Hanyang Li and Amina A. Qutub}, editor = {Russell Schwartz and Knut Reinert}, title = {Shrinkage Clustering: {A} Fast and Size-Constrained Algorithm for Biomedical Applications}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {11:1--11:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.11}, doi = {10.4230/LIPICS.WABI.2017.11}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HuLQ17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/JabbariWMW17, author = {Hosna Jabbari and Ian Wark and Carlo Montemagno and Sebastian Will}, editor = {Russell Schwartz and Knut Reinert}, title = {Sparsification Enables Predicting Kissing Hairpin Pseudoknot Structures of Long RNAs in Practice}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {12:1--12:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.12}, doi = {10.4230/LIPICS.WABI.2017.12}, timestamp = {Mon, 01 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/JabbariWMW17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KimR17, author = {Jongkyu Kim and Knut Reinert}, editor = {Russell Schwartz and Knut Reinert}, title = {Vaquita: Fast and Accurate Identification of Structural Variation Using Combined Evidence}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {13:1--13:14}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.13}, doi = {10.4230/LIPICS.WABI.2017.13}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/KimR17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MaoMRTK17, author = {Shunfu Mao and Soheil Mohajer and Kannan Ramchandran and David Tse and Sreeram Kannan}, editor = {Russell Schwartz and Knut Reinert}, title = {abSNP: RNA-Seq {SNP} Calling in Repetitive Regions via Abundance Estimation}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {15:1--15:14}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.15}, doi = {10.4230/LIPICS.WABI.2017.15}, timestamp = {Thu, 23 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MaoMRTK17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/NikumbhEP17, author = {Sarvesh Nikumbh and Peter Ebert and Nico Pfeifer}, editor = {Russell Schwartz and Knut Reinert}, title = {All Fingers Are Not the Same: Handling Variable-Length Sequences in a Discriminative Setting Using Conformal Multi-Instance Kernels}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {16:1--16:14}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.16}, doi = {10.4230/LIPICS.WABI.2017.16}, timestamp = {Fri, 30 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/NikumbhEP17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/NojgaardGMSWH17, author = {Nikolai N{\o}jgaard and Manuela Gei{\ss} and Daniel Merkle and Peter F. Stadler and Nicolas Wieseke and Marc Hellmuth}, editor = {Russell Schwartz and Knut Reinert}, title = {Forbidden Time Travel: Characterization of Time-Consistent Tree Reconciliation Maps}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {17:1--17:12}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.17}, doi = {10.4230/LIPICS.WABI.2017.17}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/NojgaardGMSWH17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/PolishkoHPBRL17, author = {Anton Polishko and Md. Abid Hasan and Weihua Pan and Evelien M. Bunnik and Karine G. Le Roch and Stefano Lonardi}, editor = {Russell Schwartz and Knut Reinert}, title = {ThIEF: Finding Genome-wide Trajectories of Epigenetics Marks}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {19:1--19:16}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.19}, doi = {10.4230/LIPICS.WABI.2017.19}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/PolishkoHPBRL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ProchazkaH17, author = {Petr Proch{\'{a}}zka and Jan Holub}, editor = {Russell Schwartz and Knut Reinert}, title = {Byte-Aligned Pattern Matching in Encoded Genomic Sequences}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {20:1--20:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.20}, doi = {10.4230/LIPICS.WABI.2017.20}, timestamp = {Wed, 25 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ProchazkaH17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/QuedenfeldR17, author = {Jens Quedenfeld and Sven Rahmann}, editor = {Russell Schwartz and Knut Reinert}, title = {Analysis of Min-Hashing for Variant Tolerant {DNA} Read Mapping}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {21:1--21:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.21}, doi = {10.4230/LIPICS.WABI.2017.21}, timestamp = {Thu, 23 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/QuedenfeldR17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ShahAP17, author = {Nidhi Shah and Stephen F. Altschul and Mihai Pop}, editor = {Russell Schwartz and Knut Reinert}, title = {Outlier Detection in {BLAST} Hits}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {23:1--23:11}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.23}, doi = {10.4230/LIPICS.WABI.2017.23}, timestamp = {Thu, 23 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ShahAP17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SimonaitisS17, author = {Pijus Simonaitis and Krister M. Swenson}, editor = {Russell Schwartz and Knut Reinert}, title = {Finding Local Genome Rearrangements}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {24:1--24:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.24}, doi = {10.4230/LIPICS.WABI.2017.24}, timestamp = {Thu, 23 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SimonaitisS17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ToivonenTU17, author = {Jarkko Toivonen and Jussi Taipale and Esko Ukkonen}, editor = {Russell Schwartz and Knut Reinert}, title = {Seed-driven Learning of Position Probability Matrices from Large Sequence Sets}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {25:1--25:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.25}, doi = {10.4230/LIPICS.WABI.2017.25}, timestamp = {Fri, 30 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/ToivonenTU17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/X17, editor = {Russell Schwartz and Knut Reinert}, title = {Front Matter, Table of Contents, Preface, List of Authors}, booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, pages = {0:i--0:xiv}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {https://doi.org/10.4230/LIPIcs.WABI.2017.0}, doi = {10.4230/LIPICS.WABI.2017.0}, timestamp = {Thu, 23 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/X17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/wabi/2017, editor = {Russell Schwartz and Knut Reinert}, title = {17th International Workshop on Algorithms in Bioinformatics, {WABI} 2017, August 21-23, 2017, Boston, MA, {USA}}, series = {LIPIcs}, volume = {88}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2017}, url = {http://www.dagstuhl.de/dagpub/978-3-95977-050-7}, isbn = {978-3-95977-050-7}, timestamp = {Tue, 11 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/2017.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/AlmirantisCGIMP16, author = {Yannis Almirantis and Panagiotis Charalampopoulos and Jia Gao and Costas S. Iliopoulos and Manal Mohamed and Solon P. Pissis and Dimitris Polychronopoulos}, editor = {Martin C. Frith and Christian N{\o}rgaard Storm Pedersen}, title = {Optimal Computation of Avoided Words}, booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI} 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9838}, pages = {1--13}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-43681-4\_1}, doi = {10.1007/978-3-319-43681-4\_1}, timestamp = {Tue, 29 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/AlmirantisCGIMP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BenshaharCHZ16, author = {Arnon Benshahar and Vered Chalifa{-}Caspi and Danny Hermelin and Michal Ziv{-}Ukelson}, editor = {Martin C. Frith and Christian N{\o}rgaard Storm Pedersen}, title = {A Biclique Approach to Reference Anchored Gene Blocks and Its Applications to Pathogenicity Islands}, booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI} 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9838}, pages = {14--26}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-43681-4\_2}, doi = {10.1007/978-3-319-43681-4\_2}, timestamp = {Thu, 15 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BenshaharCHZ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BomersbachCV16, author = {Anna Bomersbach and Marco Chiarandini and Fabio Vandin}, editor = {Martin C. Frith and Christian N{\o}rgaard Storm Pedersen}, title = {An Efficient Branch and Cut Algorithm to Find Frequently Mutated Subnetworks in Cancer}, booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI} 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9838}, pages = {27--39}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-43681-4\_3}, doi = {10.1007/978-3-319-43681-4\_3}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BomersbachCV16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BrejovaGPSV16, author = {Brona Brejov{\'{a}} and Askar Gafurov and Dana Pardubsk{\'{a}} and Michal Sabo and Tom{\'{a}}s Vinar}, editor = {Martin C. Frith and Christian N{\o}rgaard Storm Pedersen}, title = {Isometric Gene Tree Reconciliation Revisited}, booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI} 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9838}, pages = {40--51}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-43681-4\_4}, doi = {10.1007/978-3-319-43681-4\_4}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/BrejovaGPSV16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Brubach16, author = {Brian Brubach}, editor = {Martin C. Frith and Christian N{\o}rgaard Storm Pedersen}, title = {Further Improvement in Approximating the Maximum Duo-Preservation String Mapping Problem}, booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI} 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9838}, pages = {52--64}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-43681-4\_5}, doi = {10.1007/978-3-319-43681-4\_5}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Brubach16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DavidFT16, author = {Matthieu David and Guillaume Fertin and Dominique Tessier}, editor = {Martin C. Frith and Christian N{\o}rgaard Storm Pedersen}, title = {SpecTrees: An Efficient Without a Priori Data Structure for {MS/MS} Spectra Identification}, booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI} 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9838}, pages = {65--76}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-43681-4\_6}, doi = {10.1007/978-3-319-43681-4\_6}, timestamp = {Thu, 15 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DavidFT16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DeBlasioK16, author = {Dan F. DeBlasio and John D. Kececioglu}, editor = {Martin C. Frith and Christian N{\o}rgaard Storm Pedersen}, title = {Predicting Core Columns of Protein Multiple Sequence Alignments for Improved Parameter Advising}, booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI} 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9838}, pages = {77--89}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-43681-4\_7}, doi = {10.1007/978-3-319-43681-4\_7}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DeBlasioK16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DengF16, author = {Yun Deng and David Fern{\'{a}}ndez{-}Baca}, editor = {Martin C. Frith and Christian N{\o}rgaard Storm Pedersen}, title = {Fast Compatibility Testing for Phylogenies with Nested Taxa}, booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI} 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9838}, pages = {90--101}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-43681-4\_8}, doi = {10.1007/978-3-319-43681-4\_8}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DengF16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DoerrFBC16, author = {Daniel Doerr and Pedro Feij{\~{a}}o and Metin Balaban and C{\'{e}}dric Chauve}, editor = {Martin C. Frith and Christian N{\o}rgaard Storm Pedersen}, title = {The Gene Family-Free Median of Three}, booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI} 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9838}, pages = {102--120}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-43681-4\_9}, doi = {10.1007/978-3-319-43681-4\_9}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DoerrFBC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DondiEL16, author = {Riccardo Dondi and Nadia El{-}Mabrouk and Manuel Lafond}, editor = {Martin C. Frith and Christian N{\o}rgaard Storm Pedersen}, title = {Correction of Weighted Orthology and Paralogy Relations - Complexity and Algorithmic Results}, booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI} 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9838}, pages = {121--136}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-43681-4\_10}, doi = {10.1007/978-3-319-43681-4\_10}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DondiEL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/El-KebirRSSZZZ16, author = {Mohammed El{-}Kebir and Benjamin J. Raphael and Ron Shamir and Roded Sharan and Simone Zaccaria and Meirav Zehavi and Ron Zeira}, editor = {Martin C. Frith and Christian N{\o}rgaard Storm Pedersen}, title = {Copy-Number Evolution Problems: Complexity and Algorithms}, booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI} 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9838}, pages = {137--149}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-43681-4\_11}, doi = {10.1007/978-3-319-43681-4\_11}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/El-KebirRSSZZZ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ErbertRM16, author = {Marius Erbert and Steffen Rechner and Matthias M{\"{u}}ller{-}Hannemann}, editor = {Martin C. Frith and Christian N{\o}rgaard Storm Pedersen}, title = {Gerbil: {A} Fast and Memory-Efficient k-mer Counter with GPU-Support}, booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI} 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9838}, pages = {150--161}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-43681-4\_12}, doi = {10.1007/978-3-319-43681-4\_12}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/ErbertRM16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/FertinJT16, author = {Guillaume Fertin and G{\'{e}}raldine Jean and Eric Tannier}, editor = {Martin C. Frith and Christian N{\o}rgaard Storm Pedersen}, title = {Genome Rearrangements on Both Gene Order and Intergenic Regions}, booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI} 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9838}, pages = {162--173}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-43681-4\_13}, doi = {10.1007/978-3-319-43681-4\_13}, timestamp = {Thu, 15 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/FertinJT16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GhuryeP16, author = {Jay Ghurye and Mihai Pop}, editor = {Martin C. Frith and Christian N{\o}rgaard Storm Pedersen}, title = {Better Identification of Repeats in Metagenomic Scaffolding}, booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI} 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9838}, pages = {174--184}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-43681-4\_14}, doi = {10.1007/978-3-319-43681-4\_14}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/GhuryeP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GilletRTW16, author = {Ludovic Gillet and Simon R{\"{o}}sch and Thomas Tschager and Peter Widmayer}, editor = {Martin C. Frith and Christian N{\o}rgaard Storm Pedersen}, title = {A Better Scoring Model for De Novo Peptide Sequencing: The Symmetric Difference Between Explained and Measured Masses}, booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI} 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9838}, pages = {185--196}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-43681-4\_15}, doi = {10.1007/978-3-319-43681-4\_15}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/GilletRTW16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/JagerSSH16, author = {Sven Jager and Benjamin Schiller and Thorsten Strufe and Kay Hamacher}, editor = {Martin C. Frith and Christian N{\o}rgaard Storm Pedersen}, title = {StreAM- T{\_}g : Algorithms for Analyzing Coarse Grained {RNA} Dynamics Based on Markov Models of Connectivity-Graphs}, booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI} 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9838}, pages = {197--209}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-43681-4\_16}, doi = {10.1007/978-3-319-43681-4\_16}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/JagerSSH16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LobodaAS16, author = {Alexander A. Loboda and Maxim N. Artyomov and Alexey A. Sergushichev}, editor = {Martin C. Frith and Christian N{\o}rgaard Storm Pedersen}, title = {Solving Generalized Maximum-Weight Connected Subgraph Problem for Network Enrichment Analysis}, booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI} 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9838}, pages = {210--221}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-43681-4\_17}, doi = {10.1007/978-3-319-43681-4\_17}, timestamp = {Mon, 05 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LobodaAS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MaciucaEMI16, author = {Sorina Maciuca and Carlos del Ojo Elias and Gil McVean and Zamin Iqbal}, editor = {Martin C. Frith and Christian N{\o}rgaard Storm Pedersen}, title = {A Natural Encoding of Genetic Variation in a Burrows-Wheeler Transform to Enable Mapping and Genome Inference}, booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI} 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9838}, pages = {222--233}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-43681-4\_18}, doi = {10.1007/978-3-319-43681-4\_18}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MaciucaEMI16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/NielsenSH16, author = {Svend V. Nielsen and Simon Simonsen and Asger Hobolth}, editor = {Martin C. Frith and Christian N{\o}rgaard Storm Pedersen}, title = {Inferring Population Genetic Parameters: Particle Filtering, HMM, Ripley's K-Function or Runs of Homozygosity?}, booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI} 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9838}, pages = {234--245}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-43681-4\_19}, doi = {10.1007/978-3-319-43681-4\_19}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/NielsenSH16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/NovakGP16, author = {Adam M. Novak and Erik Garrison and Benedict Paten}, editor = {Martin C. Frith and Christian N{\o}rgaard Storm Pedersen}, title = {A Graph Extension of the Positional Burrows-Wheeler Transform and Its Applications}, booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI} 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9838}, pages = {246--256}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-43681-4\_20}, doi = {10.1007/978-3-319-43681-4\_20}, timestamp = {Thu, 15 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/NovakGP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/OrensteinPMSK16, author = {Yaron Orenstein and David Pellow and Guillaume Mar{\c{c}}ais and Ron Shamir and Carl Kingsford}, editor = {Martin C. Frith and Christian N{\o}rgaard Storm Pedersen}, title = {Compact Universal k-mer Hitting Sets}, booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI} 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9838}, pages = {257--268}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-43681-4\_21}, doi = {10.1007/978-3-319-43681-4\_21}, timestamp = {Fri, 02 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/OrensteinPMSK16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/PuZJ16, author = {Lianrong Pu and Daming Zhu and Haitao Jiang}, editor = {Martin C. Frith and Christian N{\o}rgaard Storm Pedersen}, title = {A New Approximation Algorithm for Unsigned Translocation Sorting}, booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI} 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9838}, pages = {269--280}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-43681-4\_22}, doi = {10.1007/978-3-319-43681-4\_22}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/PuZJ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/RenardBA16, author = {Emilie Renard and Samuel Branders and Pierre{-}Antoine Absil}, editor = {Martin C. Frith and Christian N{\o}rgaard Storm Pedersen}, title = {Independent Component Analysis to Remove Batch Effects from Merged Microarray Datasets}, booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI} 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9838}, pages = {281--292}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-43681-4\_23}, doi = {10.1007/978-3-319-43681-4\_23}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/RenardBA16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/RubertFBSM16, author = {Diego P. Rubert and Pedro Feij{\~{a}}o and Mar{\'{\i}}lia D. V. Braga and Jens Stoye and F{\'{a}}bio Viduani Martinez}, editor = {Martin C. Frith and Christian N{\o}rgaard Storm Pedersen}, title = {A Linear Time Approximation Algorithm for the {DCJ} Distance for Genomes with Bounded Number of Duplicates}, booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI} 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9838}, pages = {293--306}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-43681-4\_24}, doi = {10.1007/978-3-319-43681-4\_24}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/RubertFBSM16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SchroderR16, author = {Christopher Schr{\"{o}}der and Sven Rahmann}, editor = {Martin C. Frith and Christian N{\o}rgaard Storm Pedersen}, title = {A Hybrid Parameter Estimation Algorithm for Beta Mixtures and Applications to Methylation State Classification}, booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI} 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9838}, pages = {307--319}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-43681-4\_25}, doi = {10.1007/978-3-319-43681-4\_25}, timestamp = {Thu, 05 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SchroderR16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/wabi/2016, editor = {Martin C. Frith and Christian N{\o}rgaard Storm Pedersen}, title = {Algorithms in Bioinformatics - 16th International Workshop, {WABI} 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9838}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-43681-4}, doi = {10.1007/978-3-319-43681-4}, isbn = {978-3-319-43680-7}, timestamp = {Tue, 14 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/2016.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DrinkwaterC15, author = {Benjamin Drinkwater and Michael A. Charleston}, editor = {Mihai Pop and H{\'{e}}l{\`{e}}ne Touzet}, title = {A Sub-quadratic Time and Space Complexity Solution for the Dated Tree Reconciliation Problem for Select Tree Topologies}, booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI} 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9289}, pages = {93--107}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-662-48221-6\_7}, doi = {10.1007/978-3-662-48221-6\_7}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DrinkwaterC15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DumaCBCCL15, author = {Denise Duma and Francesca Cordero and Marco Beccuti and Gianfranco Ciardo and Timothy J. Close and Stefano Lonardi}, editor = {Mihai Pop and H{\'{e}}l{\`{e}}ne Touzet}, title = {Scrible: Ultra-Accurate Error-Correction of Pooled Sequenced Reads}, booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI} 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9289}, pages = {162--174}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-662-48221-6\_12}, doi = {10.1007/978-3-662-48221-6\_12}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/DumaCBCCL15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/FridG15, author = {Yelena Frid and Dan Gusfield}, editor = {Mihai Pop and H{\'{e}}l{\`{e}}ne Touzet}, title = {A Sparsified Four-Russian Algorithm for {RNA} Folding}, booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI} 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9289}, pages = {271--285}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-662-48221-6\_20}, doi = {10.1007/978-3-662-48221-6\_20}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/FridG15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GibsonG15, author = {Todd A. Gibson and Debra S. Goldberg}, editor = {Mihai Pop and H{\'{e}}l{\`{e}}ne Touzet}, title = {The Topological Profile of a Model of Protein Network Evolution Can Direct Model Improvement}, booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI} 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9289}, pages = {40--52}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-662-48221-6\_3}, doi = {10.1007/978-3-662-48221-6\_3}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/GibsonG15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GrossiIMPPRV15, author = {Roberto Grossi and Costas S. Iliopoulos and Robert Mercas and Nadia Pisanti and Solon P. Pissis and Ahmad Retha and Fatima Vayani}, editor = {Mihai Pop and H{\'{e}}l{\`{e}}ne Touzet}, title = {Circular Sequence Comparison with q-grams}, booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI} 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9289}, pages = {203--216}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-662-48221-6\_15}, doi = {10.1007/978-3-662-48221-6\_15}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/GrossiIMPPRV15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GusfieldN15, author = {Dan Gusfield and Rasmus Nielsen}, editor = {Mihai Pop and H{\'{e}}l{\`{e}}ne Touzet}, title = {Association Mapping for Compound Heterozygous Traits Using Phenotypic Distance and Integer Programming}, booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI} 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9289}, pages = {136--147}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-662-48221-6\_10}, doi = {10.1007/978-3-662-48221-6\_10}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/GusfieldN15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HenriquesM15, author = {Rui Henriques and Sara C. Madeira}, editor = {Mihai Pop and H{\'{e}}l{\`{e}}ne Touzet}, title = {BicNET: Efficient Biclustering of Biological Networks to Unravel Non-Trivial Modules}, booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI} 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9289}, pages = {1--15}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-662-48221-6\_1}, doi = {10.1007/978-3-662-48221-6\_1}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HenriquesM15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HolleyWS15, author = {Guillaume Holley and Roland Wittler and Jens Stoye}, editor = {Mihai Pop and H{\'{e}}l{\`{e}}ne Touzet}, title = {Bloom Filter Trie - {A} Data Structure for Pan-Genome Storage}, booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI} 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9289}, pages = {217--230}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-662-48221-6\_16}, doi = {10.1007/978-3-662-48221-6\_16}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/HolleyWS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HujdurovicKMRT15, author = {Ademir Hujdurovic and Ursa Kacar and Martin Milanic and Bernard Ries and Alexandru I. Tomescu}, editor = {Mihai Pop and H{\'{e}}l{\`{e}}ne Touzet}, title = {Finding a Perfect Phylogeny from Mixed Tumor Samples}, booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI} 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9289}, pages = {80--92}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-662-48221-6\_6}, doi = {10.1007/978-3-662-48221-6\_6}, timestamp = {Sat, 16 Sep 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HujdurovicKMRT15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LafondE15, author = {Manuel Lafond and Nadia El{-}Mabrouk}, editor = {Mihai Pop and H{\'{e}}l{\`{e}}ne Touzet}, title = {Orthology Relation and Gene Tree Correction: Complexity Results}, booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI} 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9289}, pages = {66--79}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-662-48221-6\_5}, doi = {10.1007/978-3-662-48221-6\_5}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LafondE15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MargalitBH15, author = {Yaron Margalit and Yael Baran and Eran Halperin}, editor = {Mihai Pop and H{\'{e}}l{\`{e}}ne Touzet}, title = {Multiple-Ancestor Localization for Recently Admixed Individuals}, booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI} 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9289}, pages = {121--135}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-662-48221-6\_9}, doi = {10.1007/978-3-662-48221-6\_9}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MargalitBH15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MiclotteHDAF15, author = {Giles Miclotte and Mahdi Heydari and Piet Demeester and Pieter Audenaert and Jan Fostier}, editor = {Mihai Pop and H{\'{e}}l{\`{e}}ne Touzet}, title = {Jabba: Hybrid Error Correction for Long Sequencing Reads Using Maximal Exact Matches}, booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI} 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9289}, pages = {175--188}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-662-48221-6\_13}, doi = {10.1007/978-3-662-48221-6\_13}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MiclotteHDAF15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/OrensteinB15, author = {Yaron Orenstein and Bonnie Berger}, editor = {Mihai Pop and H{\'{e}}l{\`{e}}ne Touzet}, title = {Efficient Design of Compact Unstructured {RNA} Libraries Covering All k-mers}, booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI} 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9289}, pages = {308--325}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-662-48221-6\_23}, doi = {10.1007/978-3-662-48221-6\_23}, timestamp = {Fri, 02 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/OrensteinB15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/OunitL15, author = {Rachid Ounit and Stefano Lonardi}, editor = {Mihai Pop and H{\'{e}}l{\`{e}}ne Touzet}, title = {Higher Classification Accuracy of Short Metagenomic Reads by Discriminative Spaced k-mers}, booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI} 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9289}, pages = {286--295}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-662-48221-6\_21}, doi = {10.1007/978-3-662-48221-6\_21}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/OunitL15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Pizzi15, author = {Cinzia Pizzi}, editor = {Mihai Pop and H{\'{e}}l{\`{e}}ne Touzet}, title = {A Filtering Approach for Alignment-Free Biosequences Comparison with Mismatches}, booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI} 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9289}, pages = {231--242}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-662-48221-6\_17}, doi = {10.1007/978-3-662-48221-6\_17}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Pizzi15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SeferK15, author = {Emre Sefer and Carl Kingsford}, editor = {Mihai Pop and H{\'{e}}l{\`{e}}ne Touzet}, title = {Semi-nonparametric Modeling of Topological Domain Formation from Epigenetic Data}, booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI} 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9289}, pages = {148--161}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-662-48221-6\_11}, doi = {10.1007/978-3-662-48221-6\_11}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SeferK15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SichenZLZPCAMS15, author = {Zhong Sichen and Lu Zhao and Yan Liang and Mohammadzaman Zamani and Rob Patro and Rezaul Chowdhury and Esther M. Arkin and Joseph S. B. Mitchell and Steven Skiena}, editor = {Mihai Pop and H{\'{e}}l{\`{e}}ne Touzet}, title = {Optimizing Read Reversals for Sequence Compression - (Extended Abstract)}, booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI} 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9289}, pages = {189--202}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-662-48221-6\_14}, doi = {10.1007/978-3-662-48221-6\_14}, timestamp = {Tue, 03 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/SichenZLZPCAMS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SilvaDZS15, author = {Poly H. da Silva and Simone Dantas and Chunfang Zheng and David Sankoff}, editor = {Mihai Pop and H{\'{e}}l{\`{e}}ne Touzet}, title = {Graph-Theoretic Modelling of the Domain Chaining Problem}, booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI} 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9289}, pages = {296--307}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-662-48221-6\_22}, doi = {10.1007/978-3-662-48221-6\_22}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SilvaDZS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SmolyCSLZ15, author = {Ilan Y. Smoly and Amir Carmel and Yonat Shemer{-}Avni and Esti Yeger Lotem and Michal Ziv{-}Ukelson}, editor = {Mihai Pop and H{\'{e}}l{\`{e}}ne Touzet}, title = {Algorithms for Regular Tree Grammar Network Search and Their Application to Mining Human-Viral Infection Patterns}, booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI} 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9289}, pages = {53--65}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-662-48221-6\_4}, doi = {10.1007/978-3-662-48221-6\_4}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SmolyCSLZ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SunCTM15, author = {Yihan Sun and Joseph Crawford and Jie Tang and Tijana Milenkovic}, editor = {Mihai Pop and H{\'{e}}l{\`{e}}ne Touzet}, title = {Simultaneous Optimization of both Node and Edge Conservation in Network Alignment via {WAVE}}, booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI} 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9289}, pages = {16--39}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-662-48221-6\_2}, doi = {10.1007/978-3-662-48221-6\_2}, timestamp = {Fri, 14 Sep 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SunCTM15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SwensonB15, author = {Krister M. Swenson and Mathieu Blanchette}, editor = {Mihai Pop and H{\'{e}}l{\`{e}}ne Touzet}, title = {Models and Algorithms for Genome Rearrangement with Positional Constraints}, booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI} 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9289}, pages = {243--256}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-662-48221-6\_18}, doi = {10.1007/978-3-662-48221-6\_18}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SwensonB15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/WillJ15, author = {Sebastian Will and Hosna Jabbari}, editor = {Mihai Pop and H{\'{e}}l{\`{e}}ne Touzet}, title = {Sparse {RNA} Folding Revisited: Space-Efficient Minimum Free Energy Prediction}, booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI} 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9289}, pages = {257--270}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-662-48221-6\_19}, doi = {10.1007/978-3-662-48221-6\_19}, timestamp = {Mon, 01 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/WillJ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ZhouLRHT15, author = {Jun Zhou and Yu Lin and Vaibhav Rajan and William Hoskins and Jijun Tang}, editor = {Mihai Pop and H{\'{e}}l{\`{e}}ne Touzet}, title = {Maximum Parsimony Analysis of Gene Copy Number Changes}, booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI} 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9289}, pages = {108--120}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-662-48221-6\_8}, doi = {10.1007/978-3-662-48221-6\_8}, timestamp = {Tue, 31 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ZhouLRHT15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/wabi/2015, editor = {Mihai Pop and H{\'{e}}l{\`{e}}ne Touzet}, title = {Algorithms in Bioinformatics - 15th International Workshop, {WABI} 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9289}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-662-48221-6}, doi = {10.1007/978-3-662-48221-6}, isbn = {978-3-662-48220-9}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/2015.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BonizzoniVPPR14, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {Constructing String Graphs in External Memory}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {311--325}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_23}, doi = {10.1007/978-3-662-44753-6\_23}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BonizzoniVPPR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BoriaKLM14, author = {Nicolas Boria and Adam Kurpisz and Samuli Lepp{\"{a}}nen and Monaldo Mastrolilli}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {Improved Approximation for the Maximum Duo-Preservation String Mapping Problem}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {14--25}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_2}, doi = {10.1007/978-3-662-44753-6\_2}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/BoriaKLM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BozaBV14, author = {Vladim{\'{\i}}r Boza and Brona Brejov{\'{a}} and Tom{\'{a}}s Vinar}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {{GAML:} Genome Assembly by Maximum Likelihood}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {122--134}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_10}, doi = {10.1007/978-3-662-44753-6\_10}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BozaBV14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BrucknerHK14, author = {Sharon Bruckner and Falk H{\"{u}}ffner and Christian Komusiewicz}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {A Graph Modification Approach for Finding Core-Periphery Structures in Protein Interaction Networks}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {340--351}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_25}, doi = {10.1007/978-3-662-44753-6\_25}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BrucknerHK14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/CominLS14, author = {Matteo Comin and Andrea Leoni and Michele Schimd}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {QCluster: Extending Alignment-Free Measures with Quality Values for Reads Clustering}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {1--13}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_1}, doi = {10.1007/978-3-662-44753-6\_1}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/CominLS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Compeau14, author = {Phillip E. C. Compeau}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {A Generalized Cost Model for DCJ-Indel Sorting}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {38--51}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_4}, doi = {10.1007/978-3-662-44753-6\_4}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Compeau14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/CunhaKHF14, author = {Lu{\'{\i}}s Felipe I. Cunha and Luis Antonio Brasil Kowada and Rodrigo de A. Hausen and Celina M. H. de Figueiredo}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {A Faster 1.375-Approximation Algorithm for Sorting by Transpositions}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {26--37}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_3}, doi = {10.1007/978-3-662-44753-6\_3}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/CunhaKHF14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GuGK14, author = {Chen Gu and Leonidas J. Guibas and Michael Kerber}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {Topology-Driven Trajectory Synthesis with an Example on Retinal Cell Motions}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {326--339}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_24}, doi = {10.1007/978-3-662-44753-6\_24}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/GuGK14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HaiminenLP14, author = {Niina Haiminen and Claude Lebreton and Laxmi Parida}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {Best-Fit in Linear Time for Non-generative Population Simulation - (Extended Abstract)}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {247--262}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_19}, doi = {10.1007/978-3-662-44753-6\_19}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/HaiminenLP14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HajirasoulihaR14, author = {Iman Hajirasouliha and Benjamin J. Raphael}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {Reconstructing Mutational History in Multiply Sampled Tumors Using Perfect Phylogeny Mixtures}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {354--367}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_27}, doi = {10.1007/978-3-662-44753-6\_27}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HajirasoulihaR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HuangC14, author = {Yu{-}Ting Huang and Marek Chrobak}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {An LP-Rounding Algorithm for Degenerate Primer Design}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {107--121}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_9}, doi = {10.1007/978-3-662-44753-6\_9}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HuangC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/JalaliP14, author = {Adrin Jalali and Nico Pfeifer}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {Interpretable Per Case Weighted Ensemble Method for Cancer Associations}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {352--353}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_26}, doi = {10.1007/978-3-662-44753-6\_26}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/JalaliP14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/JiangA14, author = {Shuai Jiang and Max A. Alekseyev}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {Linearization of Median Genomes under {DCJ}}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {97--106}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_8}, doi = {10.1007/978-3-662-44753-6\_8}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/JiangA14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KobertFAS14, author = {Kassian Kobert and Tom{\'{a}}s Flouri and Andre J. Aberer and Alexandros Stamatakis}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {The Divisible Load Balance Problem and Its Application to Phylogenetic Inference}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {204--216}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_16}, doi = {10.1007/978-3-662-44753-6\_16}, timestamp = {Sun, 06 Oct 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/KobertFAS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KopczynskiR14, author = {Dominik Kopczynski and Sven Rahmann}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {An Online Peak Extraction Algorithm for Ion Mobility Spectrometry Data}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {232--246}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_18}, doi = {10.1007/978-3-662-44753-6\_18}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/KopczynskiR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LinP14, author = {Yu Lin and Pavel A. Pevzner}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {Manifold de Bruijn Graphs}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {296--310}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_22}, doi = {10.1007/978-3-662-44753-6\_22}, timestamp = {Tue, 31 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LinP14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MartinezFBS14, author = {F{\'{a}}bio Viduani Martinez and Pedro Feij{\~{a}}o and Mar{\'{\i}}lia D. V. Braga and Jens Stoye}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {On the Family-Free {DCJ} Distance}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {174--186}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_14}, doi = {10.1007/978-3-662-44753-6\_14}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/MartinezFBS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MorgensternZHL14, author = {Burkhard Morgenstern and Binyao Zhu and Sebastian Horwege and Chris{-}Andr{\'{e}} Leimeister}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {Estimating Evolutionary Distances from Spaced-Word Matches}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {161--173}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_13}, doi = {10.1007/978-3-662-44753-6\_13}, timestamp = {Fri, 02 Mar 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/MorgensternZHL14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MuggliPB14, author = {Martin D. Muggli and Simon J. Puglisi and Christina Boucher}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {Efficient Indexed Alignment of Contigs to Optical Maps}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {68--81}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_6}, doi = {10.1007/978-3-662-44753-6\_6}, timestamp = {Mon, 10 Jun 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MuggliPB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Myers14, author = {Gene Myers}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {Efficient Local Alignment Discovery amongst Noisy Long Reads}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {52--67}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_5}, doi = {10.1007/978-3-662-44753-6\_5}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Myers14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ParidaPR14, author = {Laxmi Parida and Cinzia Pizzi and Simona E. Rombo}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {Entropic Profiles, Maximal Motifs and the Discovery of Significant Repetitions in Genomic Sequences}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {148--160}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_12}, doi = {10.1007/978-3-662-44753-6\_12}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ParidaPR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SacomotoSMMSL14, author = {Gustavo Sacomoto and Blerina Sinaimeri and Camille Marchet and Vincent Miele and Marie{-}France Sagot and Vincent Lacroix}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {Navigating in a Sea of Repeats in RNA-seq without Drowning}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {82--96}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_7}, doi = {10.1007/978-3-662-44753-6\_7}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SacomotoSMMSL14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ScheubertHB14, author = {Kerstin Scheubert and Franziska Hufsky and Sebastian B{\"{o}}cker}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {Multiple Mass Spectrometry Fragmentation Trees Revisited: Boosting Performance and Quality}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {217--231}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_17}, doi = {10.1007/978-3-662-44753-6\_17}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ScheubertHB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Snir14, author = {Sagi Snir}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {Pacemaker Partition Identification}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {281--295}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_21}, doi = {10.1007/978-3-662-44753-6\_21}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Snir14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/TsirogiannisSK14, author = {Constantinos Tsirogiannis and Brody Sandel and Adrija Kalvisa}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {New Algorithms for Computing Phylogenetic Biodiversity}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {187--203}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_15}, doi = {10.1007/978-3-662-44753-6\_15}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/TsirogiannisSK14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/WillS14, author = {Sebastian Will and Peter F. Stadler}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {A Common Framework for Linear and Cyclic Multiple Sequence Alignment Problems}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {135--147}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_11}, doi = {10.1007/978-3-662-44753-6\_11}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/WillS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/YangJ14, author = {Ei{-}Wen Yang and Tao Jiang}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {GDNorm: An Improved Poisson Regression Model for Reducing Biases in Hi-C Data}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {263--280}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_20}, doi = {10.1007/978-3-662-44753-6\_20}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/YangJ14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/wabi/2014, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6}, doi = {10.1007/978-3-662-44753-6}, isbn = {978-3-662-44752-9}, timestamp = {Tue, 14 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/2014.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BackofenFMQS13, author = {Rolf Backofen and Markus Fricke and Manja Marz and Jing Qin and Peter F. Stadler}, editor = {Aaron E. Darling and Jens Stoye}, title = {Distribution of Graph-Distances in Boltzmann Ensembles of {RNA} Secondary Structures}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {112--125}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_10}, doi = {10.1007/978-3-642-40453-5\_10}, timestamp = {Tue, 21 Mar 2023 21:00:29 +0100}, biburl = {https://dblp.org/rec/conf/wabi/BackofenFMQS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BockerCK13, author = {Sebastian B{\"{o}}cker and Stefan Canzar and Gunnar W. Klau}, editor = {Aaron E. Darling and Jens Stoye}, title = {The Generalized Robinson-Foulds Metric}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {156--169}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_13}, doi = {10.1007/978-3-642-40453-5\_13}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BockerCK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BulteauFKR13, author = {Laurent Bulteau and Guillaume Fertin and Christian Komusiewicz and Irena Rusu}, editor = {Aaron E. Darling and Jens Stoye}, title = {A Fixed-Parameter Algorithm for Minimum Common String Partition with Few Duplications}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {244--258}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_19}, doi = {10.1007/978-3-642-40453-5\_19}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BulteauFKR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/CuiLBL13, author = {Xuefeng Cui and Shuai Cheng Li and Dongbo Bu and Ming Li}, editor = {Aaron E. Darling and Jens Stoye}, title = {Towards Reliable Automatic Protein Structure Alignment}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {18--32}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_3}, doi = {10.1007/978-3-642-40453-5\_3}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/CuiLBL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DeshpandeFPB13, author = {Viraj Deshpande and Eric D. K. Fung and Son Pham and Vineet Bafna}, editor = {Aaron E. Darling and Jens Stoye}, title = {Cerulean: {A} Hybrid Assembly Using High Throughput Short and Long Reads}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {349--363}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_27}, doi = {10.1007/978-3-642-40453-5\_27}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DeshpandeFPB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DuhrkopLMB13, author = {Kai D{\"{u}}hrkop and Marcus Ludwig and Marvin Meusel and Sebastian B{\"{o}}cker}, editor = {Aaron E. Darling and Jens Stoye}, title = {Faster Mass Decomposition}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {45--58}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_5}, doi = {10.1007/978-3-642-40453-5\_5}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DuhrkopLMB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DumaWGNRACCL13, author = {Denisa Duma and Mary Wootters and Anna C. Gilbert and Hung Q. Ngo and Atri Rudra and Matthew Alpert and Timothy J. Close and Gianfranco Ciardo and Stefano Lonardi}, editor = {Aaron E. Darling and Jens Stoye}, title = {Accurate Decoding of Pooled Sequenced Data Using Compressed Sensing}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {70--84}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_7}, doi = {10.1007/978-3-642-40453-5\_7}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DumaWGNRACCL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/FilippovaPDK13, author = {Darya Filippova and Rob Patro and Geet Duggal and Carl Kingsford}, editor = {Aaron E. Darling and Jens Stoye}, title = {Multiscale Identification of Topological Domains in Chromatin}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {300--312}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_23}, doi = {10.1007/978-3-642-40453-5\_23}, timestamp = {Tue, 03 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/FilippovaPDK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/JanssonSS13, author = {Jesper Jansson and Chuanqi Shen and Wing{-}Kin Sung}, editor = {Aaron E. Darling and Jens Stoye}, title = {Algorithms for the Majority Rule {(+)} Consensus Tree and the Frequency Difference Consensus Tree}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {141--155}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_12}, doi = {10.1007/978-3-642-40453-5\_12}, timestamp = {Tue, 17 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/JanssonSS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KapunT13, author = {Evgeny Kapun and Fedor Tsarev}, editor = {Aaron E. Darling and Jens Stoye}, title = {On NP-Hardness of the Paired de Bruijn Sound Cycle Problem}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {59--69}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_6}, doi = {10.1007/978-3-642-40453-5\_6}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/KapunT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LeibovichY13, author = {Limor Leibovich and Zohar Yakhini}, editor = {Aaron E. Darling and Jens Stoye}, title = {Mutual Enrichment in Ranked Lists and the Statistical Assessment of Position Weight Matrix Motifs}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {273--286}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_21}, doi = {10.1007/978-3-642-40453-5\_21}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LeibovichY13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MazzaGFS13, author = {Arnon Mazza and Irit Gat{-}Viks and Hesso Farhan and Roded Sharan}, editor = {Aaron E. Darling and Jens Stoye}, title = {A Minimum-Labeling Approach for Reconstructing Protein Networks across Multiple Conditions}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {33--44}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_4}, doi = {10.1007/978-3-642-40453-5\_4}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MazzaGFS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MinkinPKVP13, author = {Ilya Minkin and Anand Patel and Mikhail Kolmogorov and Nikolay Vyahhi and Son K. Pham}, editor = {Aaron E. Darling and Jens Stoye}, title = {Sibelia: {A} Scalable and Comprehensive Synteny Block Generation Tool for Closely Related Microbial Genomes}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {215--229}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_17}, doi = {10.1007/978-3-642-40453-5\_17}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MinkinPKVP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ModzelewskiD13, author = {Michal Modzelewski and Norbert Dojer}, editor = {Aaron E. Darling and Jens Stoye}, title = {{MSARC:} Multiple Sequence Alignment by Residue Clustering}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {259--272}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_20}, doi = {10.1007/978-3-642-40453-5\_20}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ModzelewskiD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Moret13, author = {Bernard M. E. Moret}, editor = {Aaron E. Darling and Jens Stoye}, title = {Extending the Reach of Phylogenetic Inference}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {1--2}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_1}, doi = {10.1007/978-3-642-40453-5\_1}, timestamp = {Mon, 05 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Moret13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/NairLBM13, author = {Nishanth Ulhas Nair and Yu Lin and Philipp Bucher and Bernard M. E. Moret}, editor = {Aaron E. Darling and Jens Stoye}, title = {Phylogenetic Analysis of Cell Types Using Histone Modifications}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {326--337}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_25}, doi = {10.1007/978-3-642-40453-5\_25}, timestamp = {Tue, 31 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/NairLBM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/NanasiVB13, author = {Michal N{\'{a}}n{\'{a}}si and Tom{\'{a}}s Vinar and Brona Brejov{\'{a}}}, editor = {Aaron E. Darling and Jens Stoye}, title = {Probabilistic Approaches to Alignment with Tandem Repeats}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {287--299}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_22}, doi = {10.1007/978-3-642-40453-5\_22}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/NanasiVB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/OnoderaSS13, author = {Taku Onodera and Kunihiko Sadakane and Tetsuo Shibuya}, editor = {Aaron E. Darling and Jens Stoye}, title = {Detecting Superbubbles in Assembly Graphs}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {338--348}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_26}, doi = {10.1007/978-3-642-40453-5\_26}, timestamp = {Mon, 06 Nov 2017 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/OnoderaSS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SacomotoLS13, author = {Gustavo Sacomoto and Vincent Lacroix and Marie{-}France Sagot}, editor = {Aaron E. Darling and Jens Stoye}, title = {A Polynomial Delay Algorithm for the Enumeration of Bubbles with Length Constraints in Directed Graphs and Its Application to the Detection of Alternative Splicing in RNA-seq Data}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {99--111}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_9}, doi = {10.1007/978-3-642-40453-5\_9}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SacomotoLS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SalikhovSK13, author = {Kamil Salikhov and Gustavo Sacomoto and Gregory Kucherov}, editor = {Aaron E. Darling and Jens Stoye}, title = {Using Cascading Bloom Filters to Improve the Memory Usage for de Brujin Graphs}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {364--376}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_28}, doi = {10.1007/978-3-642-40453-5\_28}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/SalikhovSK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SimhaS13, author = {Ramanuja Simha and Hagit Shatkay}, editor = {Aaron E. Darling and Jens Stoye}, title = {Protein (Multi-)Location Prediction: Using Location Inter-dependencies in a Probabilistic Framework}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {3--17}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_2}, doi = {10.1007/978-3-642-40453-5\_2}, timestamp = {Fri, 02 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/SimhaS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/TomescuKRM13, author = {Alexandru I. Tomescu and Anna Kuosmanen and Romeo Rizzi and Veli M{\"{a}}kinen}, editor = {Aaron E. Darling and Jens Stoye}, title = {A Novel Combinatorial Method for Estimating Transcript Expression with RNA-Seq: Bounding the Number of Paths}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {85--98}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_8}, doi = {10.1007/978-3-642-40453-5\_8}, timestamp = {Thu, 15 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/TomescuKRM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/TsirogiannisS13, author = {Constantinos Tsirogiannis and Brody Sandel}, editor = {Aaron E. Darling and Jens Stoye}, title = {Computing the Skewness of the Phylogenetic Mean Pairwise Distance in Linear Time}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {170--184}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_14}, doi = {10.1007/978-3-642-40453-5\_14}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/TsirogiannisS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Tsourakakis13, author = {Charalampos E. Tsourakakis}, editor = {Aaron E. Darling and Jens Stoye}, title = {Modeling Intratumor Gene Copy Number Heterogeneity Using Fluorescence in Situ Hybridization Data}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {313--325}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_24}, doi = {10.1007/978-3-642-40453-5\_24}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Tsourakakis13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/VakatiF13, author = {Sudheer Vakati and David Fern{\'{a}}ndez{-}Baca}, editor = {Aaron E. Darling and Jens Stoye}, title = {Characterizing Compatibility and Agreement of Unrooted Trees via Cuts in Graphs}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {185--199}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_15}, doi = {10.1007/978-3-642-40453-5\_15}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/VakatiF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/VenkatachalamGF13, author = {Balaji Venkatachalam and Dan Gusfield and Yelena Frid}, editor = {Aaron E. Darling and Jens Stoye}, title = {Faster Algorithms for RNA-Folding Using the Four-Russians Method}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {126--140}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_11}, doi = {10.1007/978-3-642-40453-5\_11}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/VenkatachalamGF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/WiesekeBM13, author = {Nicolas Wieseke and Matthias Bernt and Martin Middendorf}, editor = {Aaron E. Darling and Jens Stoye}, title = {Unifying Parsimonious Tree Reconciliation}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {200--214}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_16}, doi = {10.1007/978-3-642-40453-5\_16}, timestamp = {Sun, 04 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/WiesekeBM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ZanettiBM13, author = {Jo{\~{a}}o Paulo Pereira Zanetti and Priscila Biller and Jo{\~{a}}o Meidanis}, editor = {Aaron E. Darling and Jens Stoye}, title = {On the Matrix Median Problem}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {230--243}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_18}, doi = {10.1007/978-3-642-40453-5\_18}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ZanettiBM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/wabi/2013, editor = {Aaron E. Darling and Jens Stoye}, title = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5}, doi = {10.1007/978-3-642-40453-5}, isbn = {978-3-642-40452-8}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/2013.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BauerCRS12, author = {Markus J. Bauer and Anthony J. Cox and Giovanna Rosone and Marinella Sciortino}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {Lightweight {LCP} Construction for Next-Generation Sequencing Datasets}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {326--337}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_26}, doi = {10.1007/978-3-642-33122-0\_26}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/BauerCRS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BerntCKMT12, author = {Matthias Bernt and Kun{-}Mao Chao and Jyun{-}Wei Kao and Martin Middendorf and Eric Tannier}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {Preserving Inversion Phylogeny Reconstruction}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {1--13}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_1}, doi = {10.1007/978-3-642-33122-0\_1}, timestamp = {Sun, 04 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BerntCKMT12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BharHMMBW12, author = {Anirban Bhar and Martin Haubrock and Anirban Mukhopadhyay and Ujjwal Maulik and Sanghamitra Bandyopadhyay and Edgar Wingender}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {{\(\delta\)}-TRIMAX: Extracting Triclusters and Analysing Coregulation in Time Series Gene Expression Data}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {165--177}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_13}, doi = {10.1007/978-3-642-33122-0\_13}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/BharHMMBW12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BoweOSS12, author = {Alexander Bowe and Taku Onodera and Kunihiko Sadakane and Tetsuo Shibuya}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {Succinct de Bruijn Graphs}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {225--235}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_18}, doi = {10.1007/978-3-642-33122-0\_18}, timestamp = {Mon, 06 Nov 2017 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/BoweOSS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BrownD12, author = {Daniel Gregory Brown and Daniel Dexter}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {SibJoin: {A} Fast Heuristic for Half-Sibling Reconstruction}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {44--56}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_4}, doi = {10.1007/978-3-642-33122-0\_4}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BrownD12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BrownT12, author = {Daniel Gregory Brown and Jakub Truszkowski}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {Fast Phylogenetic Tree Reconstruction Using Locality-Sensitive Hashing}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {14--29}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_2}, doi = {10.1007/978-3-642-33122-0\_2}, timestamp = {Mon, 05 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BrownT12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/CastellanaLRSPGV12, author = {Natalie Castellana and Andrey Lushnikov and Piotr Rotkiewicz and Natasha Sefcovic and Pavel A. Pevzner and Adam Godzik and Kira Vyatkina}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {{MORPH-PRO:} {A} Novel Algorithm and Web Server for Protein Morphing}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {262--273}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_21}, doi = {10.1007/978-3-642-33122-0\_21}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/CastellanaLRSPGV12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ChikhiR12, author = {Rayan Chikhi and Guillaume Rizk}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {Space-Efficient and Exact de Bruijn Graph Representation Based on a Bloom Filter}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {236--248}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_19}, doi = {10.1007/978-3-642-33122-0\_19}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ChikhiR12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Compeau12, author = {Phillip E. C. Compeau}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {A Simplified View of DCJ-Indel Distance}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {365--377}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_29}, doi = {10.1007/978-3-642-33122-0\_29}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Compeau12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/CoxJRS12, author = {Anthony J. Cox and Tobias Jakobi and Giovanna Rosone and Ole Schulz{-}Trieglaff}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {Comparing {DNA} Sequence Collections by Direct Comparison of Compressed Text Indexes}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {214--224}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_17}, doi = {10.1007/978-3-642-33122-0\_17}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/CoxJRS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/CuiLBRL12, author = {Xuefeng Cui and Shuai Cheng Li and Dongbo Bu and Babak Alipanahi Ramandi and Ming Li}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {How Accurately Can We Model Protein Structures with Dihedral Angles?}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {274--287}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_22}, doi = {10.1007/978-3-642-33122-0\_22}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/CuiLBRL12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DeepakFM12, author = {Akshay Deepak and David Fern{\'{a}}ndez{-}Baca and Michelle M. McMahon}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {Extracting Conflict-Free Information from Multi-labeled Trees}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {81--92}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_7}, doi = {10.1007/978-3-642-33122-0\_7}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DeepakFM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DuggalPSWFKK12, author = {Geet Duggal and Rob Patro and Emre Sefer and Hao Wang and Darya Filippova and Samir Khuller and Carl Kingsford}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {Resolving Spatial Inconsistencies in Chromosome Conformation Data}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {288--300}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_23}, doi = {10.1007/978-3-642-33122-0\_23}, timestamp = {Tue, 03 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/DuggalPSWFKK12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GaoBN12, author = {Song Gao and Denis Bertrand and Niranjan Nagarajan}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {FinIS: Improved in silico Finishing Using an Exact Quadratic Programming Formulation}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {314--325}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_25}, doi = {10.1007/978-3-642-33122-0\_25}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/GaoBN12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GyselSG12, author = {Rob Gysel and Kristian Stevens and Dan Gusfield}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {Reducing Problems in Unrooted Tree Compatibility to Restricted Triangulations of Intersection Graphs}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {93--105}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_8}, doi = {10.1007/978-3-642-33122-0\_8}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/GyselSG12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HalldorssonBS12, author = {Bjarni V. Halld{\'{o}}rsson and Dima Blokh and Roded Sharan}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {Estimating Population Size via Line Graph Reconstruction}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {69--80}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_6}, doi = {10.1007/978-3-642-33122-0\_6}, timestamp = {Mon, 05 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HalldorssonBS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HouriS12, author = {Shay Houri and Roded Sharan}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {Sign Assignment Problems on Protein Networks}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {338--345}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_27}, doi = {10.1007/978-3-642-33122-0\_27}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HouriS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/IerselKLS12, author = {Leo van Iersel and Steven Kelk and Nela Lekic and C{\'{e}}line Scornavacca}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {A Practical Approximation Algorithm for Solving Massive Instances of Hybridization Number}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {430--440}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_34}, doi = {10.1007/978-3-642-33122-0\_34}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/IerselKLS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KehrRD12, author = {Birte Kehr and Knut Reinert and Aaron E. Darling}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {Hidden Breakpoints in Genome Alignments}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {391--403}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_31}, doi = {10.1007/978-3-642-33122-0\_31}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/KehrRD12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LafondSE12, author = {Manuel Lafond and Krister M. Swenson and Nadia El{-}Mabrouk}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {An Optimal Reconciliation Algorithm for Gene Trees with Polytomies}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {106--122}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_9}, doi = {10.1007/978-3-642-33122-0\_9}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LafondSE12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LinDHBMLCS12, author = {Yen{-}Yi Lin and Phuong Dao and Faraz Hach and Marzieh Bakhshi and Fan Mo and Anna Lapuk and Colin C. Collins and S{\"{u}}leyman Cenk Sahinalp}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {{CLIIQ:} Accurate Comparative Detection and Quantification of Expressed Isoforms in a Population}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {178--189}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_14}, doi = {10.1007/978-3-642-33122-0\_14}, timestamp = {Fri, 06 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/LinDHBMLCS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MiloZKBDZ12, author = {Nimrod Milo and Shay Zakov and Erez Katzenelson and Eitan Bachmat and Yefim Dinitz and Michal Ziv{-}Ukelson}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {{RNA} Tree Comparisons via Unrooted Unordered Alignments}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {135--148}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_11}, doi = {10.1007/978-3-642-33122-0\_11}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MiloZKBDZ12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MohimaniKP12, author = {Hosein Mohimani and Sangtae Kim and Pavel A. Pevzner}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {{MS-DPR:} An Algorithm for Computing Statistical Significance of Spectral Identifications of Non-linear Peptides}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {301--313}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_24}, doi = {10.1007/978-3-642-33122-0\_24}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MohimaniKP12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/NguyenDPCRB12, author = {Thi Hau Nguyen and Jean{-}Philippe Doyon and St{\'{e}}phanie Pointet and Anne{-}Muriel Arigon Chifolleau and Vincent Ranwez and Vincent Berry}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {Accounting for Gene Tree Uncertainties Improves Gene Trees and Reconciliation Inference}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {123--134}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_10}, doi = {10.1007/978-3-642-33122-0\_10}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/NguyenDPCRB12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/RinaudoPBD12, author = {Philippe Rinaudo and Yann Ponty and Dominique Barth and Alain Denise}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {Tree Decomposition and Parameterized Algorithms for {RNA} Structure-Sequence Alignment Including Tertiary Interactions and Pseudoknots - (Extended Abstract)}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {149--164}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_12}, doi = {10.1007/978-3-642-33122-0\_12}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/RinaudoPBD12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ShiLZLS12, author = {Yi Shi and Xiaoping Liao and Xinhua Zhang and Guohui Lin and Dale Schuurmans}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {Sparse Learning Based Linear Coherent Bi-clustering}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {346--364}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_28}, doi = {10.1007/978-3-642-33122-0\_28}, timestamp = {Thu, 12 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/ShiLZLS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ShuttersVF12, author = {Brad Shutters and Sudheer Vakati and David Fern{\'{a}}ndez{-}Baca}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {Improved Lower Bounds on the Compatibility of Quartets, Triplets, and Multi-state Characters}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {190--200}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_15}, doi = {10.1007/978-3-642-33122-0\_15}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ShuttersVF12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SilvaBMD12, author = {Poly H. da Silva and Mar{\'{\i}}lia D. V. Braga and Raphael Machado and Simone Dantas}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {DCJ-indel Distance with Distinct Operation Costs}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {378--390}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_30}, doi = {10.1007/978-3-642-33122-0\_30}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SilvaBMD12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Tabei12, author = {Yasuo Tabei}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {Succinct Multibit Tree: Compact Representation of Multibit Trees by Using Succinct Data Structures in Chemical Fingerprint Searches}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {201--213}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_16}, doi = {10.1007/978-3-642-33122-0\_16}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Tabei12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/TanaseichukBJ12, author = {Olga Tanaseichuk and James Borneman and Tao Jiang}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {A Probabilistic Approach to Accurate Abundance-Based Binning of Metagenomic Reads}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {404--416}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_32}, doi = {10.1007/978-3-642-33122-0\_32}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/TanaseichukBJ12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ThomasOV12, author = {Antoine Thomas and A{\"{\i}}da Ouangraoua and Jean{-}St{\'{e}}phane Varr{\'{e}}}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {Tandem Halving Problems by {DCJ}}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {417--429}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_33}, doi = {10.1007/978-3-642-33122-0\_33}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ThomasOV12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/TsirogiannisSC12, author = {Constantinos Tsirogiannis and Brody Sandel and Dimitris Cheliotis}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {Efficient Computation of Popular Phylogenetic Tree Measures}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {30--43}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_3}, doi = {10.1007/978-3-642-33122-0\_3}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/TsirogiannisSC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ValimakiP12, author = {Niko V{\"{a}}lim{\"{a}}ki and Simon J. Puglisi}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {Distributed String Mining for High-Throughput Sequencing Data}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {441--452}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_35}, doi = {10.1007/978-3-642-33122-0\_35}, timestamp = {Fri, 02 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/ValimakiP12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/VyahhiPPP12, author = {Nikolay Vyahhi and Alex Pyshkin and Son K. Pham and Pavel A. Pevzner}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {From de Bruijn Graphs to Rectangle Graphs for Genome Assembly}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {249--261}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_20}, doi = {10.1007/978-3-642-33122-0\_20}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/VyahhiPPP12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ZhuN12, author = {Yun Zhu and Luay Nakhleh}, editor = {Benjamin J. Raphael and Jijun Tang}, title = {Reconstructing the Evolution of Molecular Interaction Networks under the {DMC} and Link Dynamics Models}, booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, pages = {57--68}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0\_5}, doi = {10.1007/978-3-642-33122-0\_5}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ZhuN12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/wabi/2012, editor = {Benjamin J. Raphael and Jijun Tang}, title = {Algorithms in Bioinformatics - 12th International Workshop, {WABI} 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7534}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33122-0}, doi = {10.1007/978-3-642-33122-0}, isbn = {978-3-642-33121-3}, timestamp = {Tue, 14 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/2012.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BrejovaBV11, author = {Brona Brejov{\'{a}} and Michal Burger and Tom{\'{a}}s Vinar}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {Automated Segmentation of {DNA} Sequences with Complex Evolutionary Histories}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {1--13}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_1}, doi = {10.1007/978-3-642-23038-7\_1}, timestamp = {Tue, 14 May 2019 10:00:40 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BrejovaBV11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BrownT11, author = {Daniel G. Brown and Jakub Truszkowski}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {Towards a Practical O(n logn) Phylogeny Algorithm}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {14--25}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_2}, doi = {10.1007/978-3-642-23038-7\_2}, timestamp = {Mon, 05 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BrownT11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/CanzarE11, author = {Stefan Canzar and Mohammed El{-}Kebir}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {A Mathematical Programming Approach to Marker-Assisted Gene Pyramiding}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {26--38}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_3}, doi = {10.1007/978-3-642-23038-7\_3}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/CanzarE11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ChikhiL11, author = {Rayan Chikhi and Dominique Lavenier}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {Localized Genome Assembly from Reads to Scaffolds: Practical Traversal of the Paired String Graph}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {39--48}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_4}, doi = {10.1007/978-3-642-23038-7\_4}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ChikhiL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DoerrGMY11, author = {Daniel Doerr and Ilan Gronau and Shlomo Moran and Irad Yavneh}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {Stochastic Errors vs. Modeling Errors in Distance Based Phylogenetic Reconstructions - (Extended Abstract)}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {49--60}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_5}, doi = {10.1007/978-3-642-23038-7\_5}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DoerrGMY11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DongF11, author = {Jianrong Dong and David Fern{\'{a}}ndez{-}Baca}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {Constructing Large Conservative Supertrees}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {61--72}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_6}, doi = {10.1007/978-3-642-23038-7\_6}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DongF11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DonskyW11, author = {Elad Donsky and Haim J. Wolfson}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {PepCrawler: {A} Fast RRT-Like Algorithm for High-Resolution Refinement and Binding-Affinity Estimation of Peptide Inhibitors - (Abstract)}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {73--75}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_7}, doi = {10.1007/978-3-642-23038-7\_7}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DonskyW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DorofteiE11, author = {Andrea Doroftei and Nadia El{-}Mabrouk}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {Removing Noise from Gene Trees}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {76--91}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_8}, doi = {10.1007/978-3-642-23038-7\_8}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DorofteiE11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ElatiFNJHK11, author = {Mohamed Elati and Rim Fekih and R{\'{e}}my Nicolle and Ivan Junier and Joan H{\'{e}}risson and Fran{\c{c}}ois K{\'{e}}p{\`{e}}s}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {Boosting Binding Sites Prediction Using Gene's Positions}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {92--103}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_9}, doi = {10.1007/978-3-642-23038-7\_9}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ElatiFNJHK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GyselLG11, author = {Rob Gysel and Fumei Lam and Dan Gusfield}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {Constructing Perfect Phylogenies and Proper Triangulations for Three-State Characters}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {104--115}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_10}, doi = {10.1007/978-3-642-23038-7\_10}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/GyselLG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HabibT11, author = {Michel Habib and Thu{-}Hien To}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {On a Conjecture about Compatibility of Multi-states Characters}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {116--127}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_11}, doi = {10.1007/978-3-642-23038-7\_11}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HabibT11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Jiang11, author = {Jonathan Qiang Jiang}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {Learning Protein Functions from Bi-relational Graph of Proteins and Function Annotations}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {128--138}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_12}, doi = {10.1007/978-3-642-23038-7\_12}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Jiang11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KaltenbachCFS11, author = {Hans{-}Michael Kaltenbach and Simona Constantinescu and Justin Feigelman and J{\"{o}}rg Stelling}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {Graph-Based Decomposition of Biochemical Reaction Networks into Monotone Subsystems}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {139--150}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_13}, doi = {10.1007/978-3-642-23038-7\_13}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/KaltenbachCFS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KimuraKN11, author = {Kouichi Kimura and Asako Koike and Kenta Nakai}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {Seed-Set Construction by Equi-entropy Partitioning for Efficient and Sensitive Short-Read Mapping}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {151--162}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_14}, doi = {10.1007/978-3-642-23038-7\_14}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/KimuraKN11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KovacBV11, author = {Jakub Kov{\'{a}}c and Brona Brejov{\'{a}} and Tom{\'{a}}s Vinar}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {A Practical Algorithm for Ancestral Rearrangement Reconstruction}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {163--174}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_15}, doi = {10.1007/978-3-642-23038-7\_15}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/KovacBV11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LinRM11, author = {Yu Lin and Vaibhav Rajan and Bernard M. E. Moret}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {Bootstrapping Phylogenies Inferred from Rearrangement Data}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {175--187}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_16}, doi = {10.1007/978-3-642-23038-7\_16}, timestamp = {Tue, 31 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LinRM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MahmudS11, author = {Md Pavel Mahmud and Alexander Schliep}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {Speeding Up Bayesian {HMM} by the Four Russians Method}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {188--200}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_17}, doi = {10.1007/978-3-642-23038-7\_17}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/MahmudS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Malod-DogninBKA11, author = {No{\"{e}}l Malod{-}Dognin and Mathilde Le Boudic{-}Jamin and Pritish Kamath and Rumen Andonov}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {Using Dominances for Solving the Protein Family Identification Problem}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {201--212}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_18}, doi = {10.1007/978-3-642-23038-7\_18}, timestamp = {Mon, 05 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Malod-DogninBKA11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MangulANTMZ11, author = {Serghei Mangul and Irina Astrovskaya and Marius Nicolae and Bassam Tork and Ion I. Mandoiu and Alexander Zelikovsky}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {Maximum Likelihood Estimation of Incomplete Genomic Spectrum from {HTS} Data}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {213--224}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_19}, doi = {10.1007/978-3-642-23038-7\_19}, timestamp = {Mon, 05 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MangulANTMZ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/NoelVR11, author = {Vincent Noel and Sergei Vakulenko and Ovidiu Radulescu}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {Algorithm for Identification of Piecewise Smooth Hybrid Systems: Application to Eukaryotic Cell Cycle Regulation}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {225--236}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_20}, doi = {10.1007/978-3-642-23038-7\_20}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/NoelVR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/PatroSMMNK11, author = {Rob Patro and Emre Sefer and Justin Malin and Guillaume Mar{\c{c}}ais and Saket Navlakha and Carl Kingsford}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {Parsimonious Reconstruction of Network Evolution}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {237--249}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_21}, doi = {10.1007/978-3-642-23038-7\_21}, timestamp = {Tue, 03 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/PatroSMMNK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/PontyS11, author = {Yann Ponty and C{\'{e}}dric Saule}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {A Combinatorial Framework for Designing (Pseudoknotted) {RNA} Algorithms}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {250--269}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_22}, doi = {10.1007/978-3-642-23038-7\_22}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/PontyS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SirenVM11, author = {Jouni Sir{\'{e}}n and Niko V{\"{a}}lim{\"{a}}ki and Veli M{\"{a}}kinen}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {Indexing Finite Language Representation of Population Genotypes}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {270--281}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_23}, doi = {10.1007/978-3-642-23038-7\_23}, timestamp = {Thu, 15 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SirenVM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/StevensK11, author = {Kristian Stevens and Bonnie Kirkpatrick}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {Efficiently Solvable Perfect Phylogeny Problems on Binary and k-State Data with Missing Values}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {282--297}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_24}, doi = {10.1007/978-3-642-23038-7\_24}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/StevensK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/TanaseichukBJ11, author = {Olga Tanaseichuk and James Borneman and Tao Jiang}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {Separating Metagenomic Short Reads into Genomes via Clustering - (Extended Abstract)}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {298--313}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_25}, doi = {10.1007/978-3-642-23038-7\_25}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/TanaseichukBJ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/VandinUR11, author = {Fabio Vandin and Eli Upfal and Benjamin J. Raphael}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {Finding Driver Pathways in Cancer: Models and Algorithms}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {314--325}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_26}, doi = {10.1007/978-3-642-23038-7\_26}, timestamp = {Mon, 16 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/VandinUR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/WhitneyKCBBB11, author = {Joseph Andrew Whitney and Judice L. Y. Koh and Michael Costanzo and Grant Brown and Charles Boone and Michael Brudno}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {Clustering with Overlap for Genetic Interaction Networks via Local Search Optimization}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {326--338}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_27}, doi = {10.1007/978-3-642-23038-7\_27}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/WhitneyKCBBB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/XiaoZML11, author = {Hang Xiao and Melvin Zhang and Axel Mosig and Hon Wai Leong}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {Dynamic Programming Algorithms for Efficiently Computing Cosegmentations between Biological Images}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {339--350}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_28}, doi = {10.1007/978-3-642-23038-7\_28}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/XiaoZML11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/XuM11, author = {Andrew Wei Xu and Bernard M. E. Moret}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {{GASTS:} Parsimony Scoring under Rearrangements}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {351--363}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_29}, doi = {10.1007/978-3-642-23038-7\_29}, timestamp = {Mon, 05 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/XuM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ZhengSLS11, author = {Chunfang Zheng and Krister M. Swenson and Eric Lyons and David Sankoff}, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {OMG! Orthologs in Multiple Genomes - Competing Graph-Theoretical Formulations}, booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, pages = {364--375}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7\_30}, doi = {10.1007/978-3-642-23038-7\_30}, timestamp = {Sun, 24 Jul 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ZhengSLS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/wabi/2011, editor = {Teresa M. Przytycka and Marie{-}France Sagot}, title = {Algorithms in Bioinformatics - 11th International Workshop, {WABI} 2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6833}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23038-7}, doi = {10.1007/978-3-642-23038-7}, isbn = {978-3-642-23037-0}, timestamp = {Tue, 14 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/2011.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/AzadLFQP10, author = {Ariful Azad and Johannes Langguth and Youhan Fang and Yuan (Alan) Qi and Alex Pothen}, editor = {Vincent Moulton and Mona Singh}, title = {Identifying Rare Cell Populations in Comparative Flow Cytometry}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {162--175}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_14}, doi = {10.1007/978-3-642-15294-8\_14}, timestamp = {Sat, 22 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/AzadLFQP10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BertrandGBE10, author = {Denis Bertrand and Yves Gagnon and Mathieu Blanchette and Nadia El{-}Mabrouk}, editor = {Vincent Moulton and Mona Singh}, title = {Reconstruction of Ancestral Genome Subject to Whole Genome Duplication, Speciation, Rearrangement and Loss}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {78--89}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_7}, doi = {10.1007/978-3-642-15294-8\_7}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BertrandGBE10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BordewichM10, author = {Magnus Bordewich and Radu Mihaescu}, editor = {Vincent Moulton and Mona Singh}, title = {Accuracy Guarantees for Phylogeny Reconstruction Algorithms Based on Balanced Minimum Evolution}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {250--261}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_21}, doi = {10.1007/978-3-642-15294-8\_21}, timestamp = {Thu, 15 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BordewichM10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BragaWS10, author = {Mar{\'{\i}}lia D. V. Braga and Eyla Willing and Jens Stoye}, editor = {Vincent Moulton and Mona Singh}, title = {Genomic Distance with {DCJ} and Indels}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {90--101}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_8}, doi = {10.1007/978-3-642-15294-8\_8}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/BragaWS10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BrownB10, author = {Daniel G. Brown and Tanya Y. Berger{-}Wolf}, editor = {Vincent Moulton and Mona Singh}, title = {Discovering Kinship through Small Subsets}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {111--123}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_10}, doi = {10.1007/978-3-642-15294-8\_10}, timestamp = {Mon, 05 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BrownB10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/CsurosJB10, author = {Mikl{\'{o}}s Cs{\"{u}}r{\"{o}}s and Szilveszter Juhos and Attila B{\'{e}}rces}, editor = {Vincent Moulton and Mona Singh}, title = {Fast Mapping and Precise Alignment of {AB} SOLiD Color Reads to Reference {DNA}}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {176--188}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_15}, doi = {10.1007/978-3-642-15294-8\_15}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/CsurosJB10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DoanE10, author = {Duong Dai Doan and Patricia A. Evans}, editor = {Vincent Moulton and Mona Singh}, title = {Fixed-Parameter Algorithm for Haplotype Inferences on General Pedigrees with Small Number of Sites}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {124--135}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_11}, doi = {10.1007/978-3-642-15294-8\_11}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DoanE10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/FridG10, author = {Yelena Frid and Dan Gusfield}, editor = {Vincent Moulton and Mona Singh}, title = {A Worst-Case and Practical Speedup for the {RNA} Co-folding Problem Using the \emph{Four-Russians} Idea}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {1--12}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_1}, doi = {10.1007/978-3-642-15294-8\_1}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/FridG10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GamzuSS10, author = {Iftah Gamzu and Danny Segev and Roded Sharan}, editor = {Vincent Moulton and Mona Singh}, title = {Improved Orientations of Physical Networks}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {215--225}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_18}, doi = {10.1007/978-3-642-15294-8\_18}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/GamzuSS10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HeE10, author = {Dan He and Eleazar Eskin}, editor = {Vincent Moulton and Mona Singh}, title = {Effective Algorithms for Fusion Gene Detection}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {312--324}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_26}, doi = {10.1007/978-3-642-15294-8\_26}, timestamp = {Tue, 27 Mar 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HeE10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HosurSB10, author = {Raghavendra Hosur and Rohit Singh and Bonnie Berger}, editor = {Vincent Moulton and Mona Singh}, title = {Sparse Estimation for Structural Variability}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {13--27}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_2}, doi = {10.1007/978-3-642-15294-8\_2}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HosurSB10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HufskyKJSB10, author = {Franziska Hufsky and L{\'{e}}on Kuchenbecker and Katharina Jahn and Jens Stoye and Sebastian B{\"{o}}cker}, editor = {Vincent Moulton and Mona Singh}, title = {Swiftly Computing Center Strings}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {325--336}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_27}, doi = {10.1007/978-3-642-15294-8\_27}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/HufskyKJSB10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/JanssonLL10, author = {Jesper Jansson and Richard S. Lemence and Andrzej Lingas}, editor = {Vincent Moulton and Mona Singh}, title = {The Complexity of Inferring a Minimally Resolved Phylogenetic Supertree}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {262--273}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_22}, doi = {10.1007/978-3-642-15294-8\_22}, timestamp = {Tue, 17 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/JanssonLL10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Kirkpatrick10, author = {Bonnie Kirkpatrick}, editor = {Vincent Moulton and Mona Singh}, title = {Haplotypes versus Genotypes on Pedigrees}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {136--147}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_12}, doi = {10.1007/978-3-642-15294-8\_12}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Kirkpatrick10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KonagurthuACBZ10, author = {Arun Siddharth Konagurthu and Lloyd Allison and Thomas C. Conway and Bryan Beresford{-}Smith and Justin Zobel}, editor = {Vincent Moulton and Mona Singh}, title = {Design of an Efficient Out-of-Core Read Alignment Algorithm}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {189--201}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_16}, doi = {10.1007/978-3-642-15294-8\_16}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/KonagurthuACBZ10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KristensenP10, author = {Thomas Greve Kristensen and Christian N. S. Pedersen}, editor = {Vincent Moulton and Mona Singh}, title = {Data Structures for Accelerating Tanimoto Queries on Real Valued Vectors}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {28--39}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_3}, doi = {10.1007/978-3-642-15294-8\_3}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/KristensenP10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MarschallR10, author = {Tobias Marschall and Sven Rahmann}, editor = {Vincent Moulton and Mona Singh}, title = {Speeding Up Exact Motif Discovery by Bounding the Expected Clump Size}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {337--349}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_28}, doi = {10.1007/978-3-642-15294-8\_28}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MarschallR10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MilreuABCMSSL10, author = {Paulo Vieira Milreu and Vicente Acu{\~{n}}a and Etienne Birmel{\'{e}} and Pierluigi Crescenzi and Alberto Marchetti{-}Spaccamela and Marie{-}France Sagot and Leen Stougie and Vincent Lacroix}, editor = {Vincent Moulton and Mona Singh}, title = {Enumerating Chemical Organisations in Consistent Metabolic Networks: Complexity and Algorithms}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {226--237}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_19}, doi = {10.1007/978-3-642-15294-8\_19}, timestamp = {Sun, 04 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MilreuABCMSSL10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MohlSWBS10, author = {Mathias M{\"{o}}hl and Raheleh Salari and Sebastian Will and Rolf Backofen and S{\"{u}}leyman Cenk Sahinalp}, editor = {Vincent Moulton and Mona Singh}, title = {Sparsification of {RNA} Structure Prediction Including Pseudoknots}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {40--51}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_4}, doi = {10.1007/978-3-642-15294-8\_4}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MohlSWBS10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/NicolaeMMZ10, author = {Marius Nicolae and Serghei Mangul and Ion I. Mandoiu and Alexander Zelikovsky}, editor = {Vincent Moulton and Mona Singh}, title = {Estimation of Alternative Splicing isoform Frequencies from RNA-Seq Data}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {202--214}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_17}, doi = {10.1007/978-3-642-15294-8\_17}, timestamp = {Mon, 05 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/NicolaeMMZ10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/PirolaBJ10, author = {Yuri Pirola and Paola Bonizzoni and Tao Jiang}, editor = {Vincent Moulton and Mona Singh}, title = {Haplotype Inference on Pedigrees with Recombinations and Mutations}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {148--161}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_13}, doi = {10.1007/978-3-642-15294-8\_13}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/PirolaBJ10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/RibeiroS10, author = {Pedro Manuel Pinto Ribeiro and Fernando M. A. Silva}, editor = {Vincent Moulton and Mona Singh}, title = {Efficient Subgraph Frequency Estimation with G-Tries}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {238--249}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_20}, doi = {10.1007/978-3-642-15294-8\_20}, timestamp = {Fri, 30 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/RibeiroS10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SchonhuthSS10, author = {Alexander Sch{\"{o}}nhuth and Raheleh Salari and S{\"{u}}leyman Cenk Sahinalp}, editor = {Vincent Moulton and Mona Singh}, title = {Pair {HMM} Based Gap Statistics for Re-evaluation of Indels in Alignments with Affine Gap Penalties}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {350--361}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_29}, doi = {10.1007/978-3-642-15294-8\_29}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SchonhuthSS10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/StevensG10, author = {Kristian Stevens and Dan Gusfield}, editor = {Vincent Moulton and Mona Singh}, title = {Reducing Multi-state to Binary Perfect Phylogeny with Applications to Missing, Removable, Inserted, and Deleted Data}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {274--287}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_23}, doi = {10.1007/978-3-642-15294-8\_23}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/StevensG10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SwensonBS10, author = {Krister M. Swenson and Ghada Badr and David Sankoff}, editor = {Vincent Moulton and Mona Singh}, title = {Listing All Sorting Reversals in Quadratic Time}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {102--110}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_9}, doi = {10.1007/978-3-642-15294-8\_9}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SwensonBS10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SwensonSLW10, author = {M. Shel Swenson and Rahul Suri and C. Randal Linder and Tandy J. Warnow}, editor = {Vincent Moulton and Mona Singh}, title = {An Experimental Study of Quartets MaxCut and Other Supertree Methods}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {288--299}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_24}, doi = {10.1007/978-3-642-15294-8\_24}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SwensonSLW10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/TheisJG10, author = {Corinna Theis and Stefan Janssen and Robert Giegerich}, editor = {Vincent Moulton and Mona Singh}, title = {Prediction of {RNA} Secondary Structure Including Kissing Hairpin Motifs}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {52--64}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_5}, doi = {10.1007/978-3-642-15294-8\_5}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/TheisJG10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Yeang10, author = {Chen{-}Hsiang Yeang}, editor = {Vincent Moulton and Mona Singh}, title = {Quantifying the Strength of Natural Selection of a Motif Sequence}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {362--373}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_30}, doi = {10.1007/978-3-642-15294-8\_30}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Yeang10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ZakovTZ10, author = {Shay Zakov and Dekel Tsur and Michal Ziv{-}Ukelson}, editor = {Vincent Moulton and Mona Singh}, title = {Reducing the Worst Case Running Times of a Family of {RNA} and {CFG} Problems, Using Valiant's Approach}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {65--77}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_6}, doi = {10.1007/978-3-642-15294-8\_6}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ZakovTZ10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ZhangC10, author = {Louxin Zhang and Yun Cui}, editor = {Vincent Moulton and Mona Singh}, title = {An Efficient Method for DNA-Based Species Assignment via Gene Tree and Species Tree Reconciliation}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {300--311}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_25}, doi = {10.1007/978-3-642-15294-8\_25}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ZhangC10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/wabi/2010, editor = {Vincent Moulton and Mona Singh}, title = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8}, doi = {10.1007/978-3-642-15294-8}, isbn = {978-3-642-15293-1}, timestamp = {Tue, 14 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/2010.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BockerRS09, author = {Sebastian B{\"{o}}cker and Florian Rasche and Tamara Steijger}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {Annotating Fragmentation Patterns}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {13--24}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_2}, doi = {10.1007/978-3-642-04241-6\_2}, timestamp = {Tue, 14 May 2019 10:00:40 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BockerRS09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BonizzoniVDPR09, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Yuri Pirola and Raffaella Rizzi}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {Minimum Factorization Agreement of Spliced ESTs}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {1--12}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_1}, doi = {10.1007/978-3-642-04241-6\_1}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BonizzoniVDPR09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ChitsazBS09, author = {Hamidreza Chitsaz and Rolf Backofen and S{\"{u}}leyman Cenk Sahinalp}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {biRNA: Fast {RNA-RNA} Binding Sites Prediction}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {25--36}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_3}, doi = {10.1007/978-3-642-04241-6\_3}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ChitsazBS09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DaoSHHSE09, author = {Phuong Dao and Alexander Sch{\"{o}}nhuth and Fereydoun Hormozdiari and Iman Hajirasouliha and S{\"{u}}leyman Cenk Sahinalp and Martin Ester}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {Quantifying Systemic Evolutionary Changes by Color Coding Confidence-Scored {PPI} Networks}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {37--48}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_4}, doi = {10.1007/978-3-642-04241-6\_4}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DaoSHHSE09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DeBlasioBZ09, author = {Daniel DeBlasio and Jocelyne Bruand and Shaojie Zhang}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {PMFastR: {A} New Approach to Multiple {RNA} Structure Alignment}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {49--61}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_5}, doi = {10.1007/978-3-642-04241-6\_5}, timestamp = {Thu, 15 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DeBlasioBZ09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DongFM09, author = {Jianrong Dong and David Fern{\'{a}}ndez{-}Baca and Fred R. McMorris}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {Constructing Majority-Rule Supertrees}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {73--84}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_7}, doi = {10.1007/978-3-642-04241-6\_7}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DongFM09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/FeijaoM09, author = {Pedro Feij{\~{a}}o and Jo{\~{a}}o Meidanis}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {{SCJ:} {A} Variant of Breakpoint Distance for Which Sorting, Genome Median and Genome Halving Problems Are Easy}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {85--96}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_8}, doi = {10.1007/978-3-642-04241-6\_8}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/FeijaoM09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/FridG09, author = {Yelena Frid and Dan Gusfield}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {A Simple, Practical and Complete \emph{O}({\textbackslash}frac\emph{n}\({}^{\mbox{3}}\) log\emph{n})O({\textbackslash}frac\{n3\}\{ {\textbackslash}log n\})-Time Algorithm for {RNA} Folding Using the \emph{Four-Russians} Speedup}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {97--107}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_9}, doi = {10.1007/978-3-642-04241-6\_9}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/FridG09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GirdeaNK09, author = {Marta G{\^{\i}}rdea and Laurent No{\'{e}} and Gregory Kucherov}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {Back-Translation for Discovering Distant Protein Homologies}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {108--120}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_10}, doi = {10.1007/978-3-642-04241-6\_10}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/GirdeaNK09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GrossiPPPUV09, author = {Roberto Grossi and Andrea Pietracaprina and Nadia Pisanti and Geppino Pucci and Eli Upfal and Fabio Vandin}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {{MADMX:} {A} Novel Strategy for Maximal Dense Motif Extraction}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {362--374}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_30}, doi = {10.1007/978-3-642-04241-6\_30}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/GrossiPPPUV09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HancockM09, author = {Timothy Hancock and Hiroshi Mamitsuka}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {A Markov Classification Model for Metabolic Pathways}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {121--132}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_11}, doi = {10.1007/978-3-642-04241-6\_11}, timestamp = {Thu, 15 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HancockM09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HansenESH09, author = {Matthew Hansen and Logan Everett and Larry N. Singh and Sridhar Hannenhalli}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {Mimosa: Mixture Model of Co-expression to Detect Modulators of Regulatory Interaction}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {133--144}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_12}, doi = {10.1007/978-3-642-04241-6\_12}, timestamp = {Sun, 21 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HansenESH09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HusemannS09, author = {Peter Husemann and Jens Stoye}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {Phylogenetic Comparative Assembly}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {145--156}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_13}, doi = {10.1007/978-3-642-04241-6\_13}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/HusemannS09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/JiangTLCF09, author = {Minghui Jiang and Pedro J. Tejada and Ramoni O. Lasisi and Shanhong Cheng and D. Scott Fechser}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {K-Partite {RNA} Secondary Structures}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {157--168}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_14}, doi = {10.1007/978-3-642-04241-6\_14}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/JiangTLCF09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KahnMR09, author = {Crystal L. Kahn and Shay Mozes and Benjamin J. Raphael}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {Efficient Algorithms for Analyzing Segmental Duplications, Deletions, and Inversions in Genomes}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {169--180}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_15}, doi = {10.1007/978-3-642-04241-6\_15}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/KahnMR09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KovacVB09, author = {Jakub Kov{\'{a}}c and Tom{\'{a}}s Vinar and Brona Brejov{\'{a}}}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {Predicting Gene Structures from Multiple {RT-PCR} Tests}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {181--193}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_16}, doi = {10.1007/978-3-642-04241-6\_16}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/KovacVB09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KristensenNP09, author = {Thomas Greve Kristensen and Jesper Buus Nielsen and Christian N. S. Pedersen}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {A Tree Based Method for the Rapid Screening of Chemical Fingerprints}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {194--205}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_17}, doi = {10.1007/978-3-642-04241-6\_17}, timestamp = {Thu, 11 Nov 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/KristensenNP09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LamGS09, author = {Fumei Lam and Dan Gusfield and Srinath Sridhar}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {Generalizing the Four Gamete Condition and Splits Equivalence Theorem: Perfect Phylogeny on Three State Characters}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {206--219}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_18}, doi = {10.1007/978-3-642-04241-6\_18}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LamGS09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LenaFMVC09, author = {Pietro di Lena and Piero Fariselli and Luciano Margara and Marco Vassura and Rita Casadio}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {On the Upper Bound of the Prediction Accuracy of Residue Contacts in Proteins with Correlated Mutations: The Case Study of the Similarity Matrices}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {62--72}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_6}, doi = {10.1007/978-3-642-04241-6\_6}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/LenaFMVC09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/PengATP09, author = {Qian Peng and Max A. Alekseyev and Glenn Tesler and Pavel A. Pevzner}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {Decoding Synteny Blocks and Large-Scale Duplications in Mammalian and Plant Genomes}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {220--232}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_19}, doi = {10.1007/978-3-642-04241-6\_19}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/PengATP09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Rastas09, author = {Pasi Rastas}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {A General Framework for Local Pairwise Alignment Statistics with Gaps}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {233--245}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_20}, doi = {10.1007/978-3-642-04241-6\_20}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Rastas09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/RivalsSKKT09, author = {Eric Rivals and Leena Salmela and Petteri Kiiskinen and Petri Kalsi and Jorma Tarhio}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {mpscan: Fast Localisation of Multiple Reads in Genomes}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {246--260}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_21}, doi = {10.1007/978-3-642-04241-6\_21}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/RivalsSKKT09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SalariBS09, author = {Raheleh Salari and Rolf Backofen and S{\"{u}}leyman Cenk Sahinalp}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {Fast Prediction of {RNA-RNA} Interaction}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {261--272}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_22}, doi = {10.1007/978-3-642-04241-6\_22}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SalariBS09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SalemZB09, author = {Saeed Salem and Mohammed J. Zaki and Chris Bystroff}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {FlexSnap: Flexible Non-sequential Protein Structure Alignment}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {273--285}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_23}, doi = {10.1007/978-3-642-04241-6\_23}, timestamp = {Mon, 05 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SalemZB09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SatoHMAS09, author = {Kengo Sato and Michiaki Hamada and Toutai Mituyama and Kiyoshi Asai and Yasubumi Sakakibara}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {A Non-parametric Bayesian Approach for Predicting {RNA} Secondary Structures}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {286--297}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_24}, doi = {10.1007/978-3-642-04241-6\_24}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/SatoHMAS09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SchulzKBVR09, author = {Marcel H. Schulz and Sebastian K{\"{o}}hler and Sebastian Bauer and Martin Vingron and Peter N. Robinson}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {Exact Score Distribution Computation for Similarity Searches in Ontologies}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {298--309}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_25}, doi = {10.1007/978-3-642-04241-6\_25}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SchulzKBVR09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ShibuyaJS09, author = {Tetsuo Shibuya and Jesper Jansson and Kunihiko Sadakane}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {Linear-Time Protein 3-D Structure Searching with Insertions and Deletions}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {310--320}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_26}, doi = {10.1007/978-3-642-04241-6\_26}, timestamp = {Tue, 17 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ShibuyaJS09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SundbergCS09, author = {Kenneth Sundberg and Mark J. Clement and Quinn Snell}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {Visualizing Phylogenetic Treespace Using Cartographic Projections}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {321--332}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_27}, doi = {10.1007/978-3-642-04241-6\_27}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SundbergCS09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SwensonBLW09, author = {M. Shel Swenson and Fran{\c{c}}ois Barban{\c{c}}on and C. Randal Linder and Tandy J. Warnow}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {A Simulation Study Comparing Supertree and Combined Analysis Methods Using SMIDGen}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {333--344}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_28}, doi = {10.1007/978-3-642-04241-6\_28}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SwensonBLW09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/TowficGH09, author = {Fadi Towfic and M. Heather West Greenlee and Vasant G. Honavar}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {Aligning Biomolecular Networks Using Modular Graph Kernels}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {345--361}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_29}, doi = {10.1007/978-3-642-04241-6\_29}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/TowficGH09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Wheeler09, author = {Travis J. Wheeler}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {Large-Scale Neighbor-Joining with {NINJA}}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {375--389}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_31}, doi = {10.1007/978-3-642-04241-6\_31}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Wheeler09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/WhiddenZ09, author = {Chris Whidden and Norbert Zeh}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {A Unifying View on Approximation and {FPT} of Agreement Forests}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {390--402}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_32}, doi = {10.1007/978-3-642-04241-6\_32}, timestamp = {Mon, 05 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/WhiddenZ09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/WongLSY09, author = {Thomas K. F. Wong and Tak Wah Lam and Wing{-}Kin Sung and Siu{-}Ming Yiu}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {Structural Alignment of {RNA} with Complex Pseudoknot Structure}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {403--414}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_33}, doi = {10.1007/978-3-642-04241-6\_33}, timestamp = {Fri, 27 Dec 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/WongLSY09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ZhangM09, author = {Xiuwei Zhang and Bernard M. E. Moret}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {Improving Inference of Transcriptional Regulatory Networks Based on Network Evolutionary Models}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {415--428}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_34}, doi = {10.1007/978-3-642-04241-6\_34}, timestamp = {Mon, 05 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ZhangM09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/wabi/2009, editor = {Steven Salzberg and Tandy J. Warnow}, title = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6}, doi = {10.1007/978-3-642-04241-6}, isbn = {978-3-642-04240-9}, timestamp = {Tue, 14 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/2009.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/AndonovYM08, author = {Rumen Andonov and Nicola Yanev and No{\"{e}}l Malod{-}Dognin}, editor = {Keith A. Crandall and Jens Lagergren}, title = {An Efficient Lagrangian Relaxation for the Contact Map Overlap Problem}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {162--173}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_14}, doi = {10.1007/978-3-540-87361-7\_14}, timestamp = {Tue, 14 May 2019 10:00:40 +0200}, biburl = {https://dblp.org/rec/conf/wabi/AndonovYM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BattkeMSN08, author = {Florian Battke and Carsten M{\"{u}}ller{-}Tidow and Hubert Serve and Kay Nieselt}, editor = {Keith A. Crandall and Jens Lagergren}, title = {Post-Hybridization Quality Measures for Oligos in Genome-Wide Microarray Experiments}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {64--75}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_6}, doi = {10.1007/978-3-540-87361-7\_6}, timestamp = {Mon, 05 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BattkeMSN08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BockenhauerUKS08, author = {Hans{-}Joachim B{\"{o}}ckenhauer and Abu Zafer M. Dayem Ullah and Leonidas Kapsokalivas and Kathleen Steinh{\"{o}}fel}, editor = {Keith A. Crandall and Jens Lagergren}, title = {A Local Move Set for Protein Folding in Triangular Lattice Models}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {369--381}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_31}, doi = {10.1007/978-3-540-87361-7\_31}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BockenhauerUKS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BozdagCL08, author = {Serdar Bozdag and Timothy J. Close and Stefano Lonardi}, editor = {Keith A. Crandall and Jens Lagergren}, title = {Computing the Minimal Tiling Path from a Physical Map by Integer Linear Programming}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {148--161}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_13}, doi = {10.1007/978-3-540-87361-7\_13}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BozdagCL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ChoiZHPDE08, author = {Arthur Choi and Noah Zaitlen and Buhm Han and Knot Pipatsrisawat and Adnan Darwiche and Eleazar Eskin}, editor = {Keith A. Crandall and Jens Lagergren}, title = {Efficient Genome Wide Tagging by Reduction to {SAT}}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {135--147}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_12}, doi = {10.1007/978-3-540-87361-7\_12}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ChoiZHPDE08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/CottretMAMMSS08, author = {Ludovic Cottret and Paulo Vieira Milreu and Vicente Acu{\~{n}}a and Alberto Marchetti{-}Spaccamela and F{\'{a}}bio Viduani Martinez and Marie{-}France Sagot and Leen Stougie}, editor = {Keith A. Crandall and Jens Lagergren}, title = {Enumerating Precursor Sets of Target Metabolites in a Metabolic Network}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {233--244}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_20}, doi = {10.1007/978-3-540-87361-7\_20}, timestamp = {Sun, 04 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/CottretMAMMSS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Damaschke08, author = {Peter Damaschke}, editor = {Keith A. Crandall and Jens Lagergren}, title = {Minimum Common String Partition Parameterized}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {87--98}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_8}, doi = {10.1007/978-3-540-87361-7\_8}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Damaschke08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GrunewaldSFM08, author = {Stefan Gr{\"{u}}newald and Andreas Spillner and Kristoffer Forslund and Vincent Moulton}, editor = {Keith A. Crandall and Jens Lagergren}, title = {Constructing Phylogenetic Supernetworks from Quartets}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {284--295}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_24}, doi = {10.1007/978-3-540-87361-7\_24}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/GrunewaldSFM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HermsR08, author = {Inke Herms and Sven Rahmann}, editor = {Keith A. Crandall and Jens Lagergren}, title = {Computing Alignment Seed Sensitivity with Probabilistic Arithmetic Automata}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {318--329}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_27}, doi = {10.1007/978-3-540-87361-7\_27}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HermsR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HickeyCMZ08, author = {Glenn Hickey and Paz Carmi and Anil Maheshwari and Norbert Zeh}, editor = {Keith A. Crandall and Jens Lagergren}, title = {{NAPX:} {A} Polynomial Time Approximation Scheme for the Noah's Ark Problem}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {76--86}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_7}, doi = {10.1007/978-3-540-87361-7\_7}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HickeyCMZ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HusonR08, author = {Daniel H. Huson and Regula Rupp}, editor = {Keith A. Crandall and Jens Lagergren}, title = {Summarizing Multiple Gene Trees Using Cluster Networks}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {296--305}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_25}, doi = {10.1007/978-3-540-87361-7\_25}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HusonR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LacroixSGB08, author = {Vincent Lacroix and Michael Sammeth and Roderic Guig{\'{o}} and Anne Bergeron}, editor = {Keith A. Crandall and Jens Lagergren}, title = {Exact Transcriptome Reconstruction from Short Sequence Reads}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {50--63}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_5}, doi = {10.1007/978-3-540-87361-7\_5}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LacroixSGB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LingnerM08, author = {Thomas Lingner and Peter Meinicke}, editor = {Keith A. Crandall and Jens Lagergren}, title = {Fast Target Set Reduction for Large-Scale Protein Function Prediction: {A} Multi-class Multi-label Machine Learning Approach}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {198--209}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_17}, doi = {10.1007/978-3-540-87361-7\_17}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LingnerM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MedvedovskyBZS08, author = {Alexander Medvedovsky and Vineet Bafna and Uri Zwick and Roded Sharan}, editor = {Keith A. Crandall and Jens Lagergren}, title = {An Algorithm for Orienting Graphs Based on Cause-Effect Pairs and Its Applications to Orienting Protein Networks}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {222--232}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_19}, doi = {10.1007/978-3-540-87361-7\_19}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MedvedovskyBZS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/NikoloskiGSE08, author = {Zoran Nikoloski and Sergio Grimbs and Joachim Selbig and Oliver Ebenh{\"{o}}h}, editor = {Keith A. Crandall and Jens Lagergren}, title = {Hardness and Approximability of the Inverse Scope Problem}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {99--112}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_9}, doi = {10.1007/978-3-540-87361-7\_9}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/NikoloskiGSE08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/OngZ08, author = {Cheng Soon Ong and Alexander Zien}, editor = {Keith A. Crandall and Jens Lagergren}, title = {An Automated Combination of Kernels for Predicting Protein Subcellular Localization}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {186--197}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_16}, doi = {10.1007/978-3-540-87361-7\_16}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/OngZ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/PaluszewskiW08, author = {Martin Paluszewski and Pawel Winter}, editor = {Keith A. Crandall and Jens Lagergren}, title = {Protein Decoy Generation Using Branch and Bound with Efficient Bounding}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {382--393}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_32}, doi = {10.1007/978-3-540-87361-7\_32}, timestamp = {Mon, 05 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/PaluszewskiW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/PfeiferK08, author = {Nico Pfeifer and Oliver Kohlbacher}, editor = {Keith A. Crandall and Jens Lagergren}, title = {Multiple Instance Learning Allows {MHC} Class {II} Epitope Predictions Across Alleles}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {210--221}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_18}, doi = {10.1007/978-3-540-87361-7\_18}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/PfeiferK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/QuitzauS08, author = {Jos{\'{e}} Augusto Amgarten Quitzau and Jens Stoye}, editor = {Keith A. Crandall and Jens Lagergren}, title = {Detecting Repeat Families in Incompletely Sequenced Genomes}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {342--353}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_29}, doi = {10.1007/978-3-540-87361-7\_29}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/QuitzauS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/RastasKK08, author = {Pasi Rastas and Jussi Kollin and Mikko Koivisto}, editor = {Keith A. Crandall and Jens Lagergren}, title = {Fast Bayesian Haplotype Inference Via Context Tree Weighting}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {259--270}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_22}, doi = {10.1007/978-3-540-87361-7\_22}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/RastasKK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SalariSHCS08, author = {Raheleh Salari and Alexander Sch{\"{o}}nhuth and Fereydoun Hormozdiari and Artem Cherkasov and S{\"{u}}leyman Cenk Sahinalp}, editor = {Keith A. Crandall and Jens Lagergren}, title = {The Relation between Indel Length and Functional Divergence: {A} Formal Study}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {330--341}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_28}, doi = {10.1007/978-3-540-87361-7\_28}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SalariSHCS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SchulzWRDRV08, author = {Marcel H. Schulz and David Weese and Tobias Rausch and Andreas D{\"{o}}ring and Knut Reinert and Martin Vingron}, editor = {Keith A. Crandall and Jens Lagergren}, title = {Fast and Adaptive Variable Order Markov Chain Construction}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {306--317}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_26}, doi = {10.1007/978-3-540-87361-7\_26}, timestamp = {Sun, 06 Oct 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SchulzWRDRV08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SimonsenMP08, author = {Martin Simonsen and Thomas Mailund and Christian N. S. Pedersen}, editor = {Keith A. Crandall and Jens Lagergren}, title = {Rapid Neighbour-Joining}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {113--122}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_10}, doi = {10.1007/978-3-540-87361-7\_10}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/SimonsenMP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SnirT08, author = {Sagi Snir and Tamir Tuller}, editor = {Keith A. Crandall and Jens Lagergren}, title = {Novel Phylogenetic Network Inference by Combining Maximum Likelihood and Hidden Markov Models}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {354--368}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_30}, doi = {10.1007/978-3-540-87361-7\_30}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SnirT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SulBW08, author = {Seung{-}Jin Sul and Grant R. Brammer and Tiffani L. Williams}, editor = {Keith A. Crandall and Jens Lagergren}, title = {Efficiently Computing Arbitrarily-Sized Robinson-Foulds Distance Matrices}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {123--134}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_11}, doi = {10.1007/978-3-540-87361-7\_11}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SulBW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/TannierZS08, author = {Eric Tannier and Chunfang Zheng and David Sankoff}, editor = {Keith A. Crandall and Jens Lagergren}, title = {Multichromosomal Genome Median and Halving Problems}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {1--13}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_1}, doi = {10.1007/978-3-540-87361-7\_1}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/TannierZS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/XuS08, author = {Andrew Wei Xu and David Sankoff}, editor = {Keith A. Crandall and Jens Lagergren}, title = {Decompositions of Multiple Breakpoint Graphs and Rapid Exact Solutions to the Median Problem}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {25--37}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_3}, doi = {10.1007/978-3-540-87361-7\_3}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/XuS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/YanovskyRB08, author = {Vladimir Yanovski and Stephen M. Rumble and Michael Brudno}, editor = {Keith A. Crandall and Jens Lagergren}, title = {Read Mapping Algorithms for Single Molecule Sequencing Data}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {38--49}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_4}, doi = {10.1007/978-3-540-87361-7\_4}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/YanovskyRB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ZhangAT08, author = {Meng Zhang and William Arndt and Jijun Tang}, editor = {Keith A. Crandall and Jens Lagergren}, title = {A Branch-and-Bound Method for the Multichromosomal Reversal Median Problem}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {14--24}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_2}, doi = {10.1007/978-3-540-87361-7\_2}, timestamp = {Fri, 01 Feb 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/ZhangAT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ZhangM08, author = {Xiuwei Zhang and Bernard M. E. Moret}, editor = {Keith A. Crandall and Jens Lagergren}, title = {Boosting the Performance of Inference Algorithms for Transcriptional Regulatory Networks Using a Phylogenetic Approach}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {245--258}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_21}, doi = {10.1007/978-3-540-87361-7\_21}, timestamp = {Mon, 05 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ZhangM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ZhangWMPVT08, author = {Qi Zhang and Wei Wang and Leonard McMillan and Jan F. Prins and Fernando Pardo{-}Manuel de Villena and David Threadgill}, editor = {Keith A. Crandall and Jens Lagergren}, title = {Genotype Sequence Segmentation: Handling Constraints and Noise}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {271--283}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_23}, doi = {10.1007/978-3-540-87361-7\_23}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ZhangWMPVT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Ziv-UkelsonGWS08, author = {Michal Ziv{-}Ukelson and Irit Gat{-}Viks and Ydo Wexler and Ron Shamir}, editor = {Keith A. Crandall and Jens Lagergren}, title = {A Faster Algorithm for {RNA} Co-folding}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {174--185}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_15}, doi = {10.1007/978-3-540-87361-7\_15}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/Ziv-UkelsonGWS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/wabi/2008, editor = {Keith A. Crandall and Jens Lagergren}, title = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7}, doi = {10.1007/978-3-540-87361-7}, isbn = {978-3-540-87360-0}, timestamp = {Tue, 14 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/2008.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/AlbertDDKSZW07, author = {R{\'{e}}ka Albert and Bhaskar DasGupta and Riccardo Dondi and Sema Kachalo and Eduardo D. Sontag and Alexander Zelikovsky and Kelly Westbrooks}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {407--419}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_38}, doi = {10.1007/978-3-540-74126-8\_38}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/AlbertDDKSZW07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ApostolicoT07, author = {Alberto Apostolico and Claudia Tagliacollo}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Incremental Discovery of Irredundant Motif Bases in Time \emph{O}({\(\vert\)}\emph{Sigma}{\(\vert\)} \emph{n}\({}^{\mbox{2}}\) log \emph{n})}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {136--148}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_13}, doi = {10.1007/978-3-540-74126-8\_13}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ApostolicoT07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BansalE07, author = {Mukul S. Bansal and Oliver Eulenstein}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {An \emph{Omega}(\emph{n}\({}^{\mbox{2}}\)/log \emph{n}) Speed-Up of {TBR} Heuristics for the Gene-Duplication Problem}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {124--135}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_12}, doi = {10.1007/978-3-540-74126-8\_12}, timestamp = {Sun, 04 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BansalE07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BirinGET07, author = {Hadas Birin and Zohar Gal{-}Or and Isaac Elias and Tamir Tuller}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Inferring Models of Rearrangements, Recombinations, and Horizontal Transfers by the Minimum Evolution Criterion}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {111--123}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_11}, doi = {10.1007/978-3-540-74126-8\_11}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BirinGET07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BoucherBC07, author = {Christina Boucher and Daniel G. Brown and Paul Church}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {A Graph Clustering Approach to Weak Motif Recognition}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {149--160}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_14}, doi = {10.1007/978-3-540-74126-8\_14}, timestamp = {Mon, 10 Jun 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BoucherBC07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Bucan07, author = {Maja Bucan}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Novel Approaches in Psychiatric Genomics}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {371}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_34}, doi = {10.1007/978-3-540-74126-8\_34}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Bucan07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ChinLSY07, author = {Francis Y. L. Chin and Henry C. M. Leung and Wing{-}Kin Sung and Siu{-}Ming Yiu}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {The Point Placement Problem on a Line - Improved Bounds for Pairwise Distance Queries}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {372--382}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_35}, doi = {10.1007/978-3-540-74126-8\_35}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ChinLSY07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ChoiZZS07, author = {Vicky Choi and Chunfang Zheng and Qian Zhu and David Sankoff}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Algorithms for the Extraction of Synteny Blocks from Comparative Maps}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {277--288}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_26}, doi = {10.1007/978-3-540-74126-8\_26}, timestamp = {Sat, 26 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/ChoiZZS07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DavilaBR07, author = {Jaime I. D{\'{a}}vila and Sudha Balla and Sanguthevar Rajasekaran}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Fast Algorithms for Selecting Specific siRNA in Complete mRNA Data}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {302--309}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_28}, doi = {10.1007/978-3-540-74126-8\_28}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DavilaBR07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DhanikYMPKLBL07, author = {Ankur Dhanik and Peggy Yao and Nathan Marz and Ryan Propper and Charles Kou and Guanfeng Liu and Henry van den Bedem and Jean{-}Claude Latombe}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {265--276}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_25}, doi = {10.1007/978-3-540-74126-8\_25}, timestamp = {Thu, 07 Nov 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/DhanikYMPKLBL07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DundasBDL07, author = {Joe Dundas and T. Andrew Binkowski and Bhaskar DasGupta and Jie Liang}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Topology Independent Protein Structural Alignment}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {171--182}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_16}, doi = {10.1007/978-3-540-74126-8\_16}, timestamp = {Thu, 25 Nov 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/DundasBDL07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GenoveseGP07, author = {Loredana M. Genovese and Filippo Geraci and Marco Pellegrini}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {A Fast and Accurate Heuristic for the Single Individual {SNP} Haplotyping Problem with Many Gaps, High Reading Error Rate and Low Coverage}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {49--60}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_6}, doi = {10.1007/978-3-540-74126-8\_6}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/GenoveseGP07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HeathP07, author = {Lenwood S. Heath and Amrita Pati}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Genomic Signatures in De Bruijn Chains}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {216--227}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_21}, doi = {10.1007/978-3-540-74126-8\_21}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HeathP07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/IlieI07, author = {Lucian Ilie and Silvana Ilie}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Fast Computation of Good Multiple Spaced Seeds}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {346--358}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_32}, doi = {10.1007/978-3-540-74126-8\_32}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/IlieI07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/JabbariCPPZ07, author = {Hosna Jabbari and Anne Condon and Ana Pop and Cristina Pop and Yinglei Zhao}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {HFold: {RNA} Pseudoknotted Secondary Structure Prediction Using Hierarchical Folding}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {323--334}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_30}, doi = {10.1007/978-3-540-74126-8\_30}, timestamp = {Mon, 01 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/JabbariCPPZ07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/JeongBP07, author = {Jieun K. Jeong and Piotr Berman and Teresa M. Przytycka}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Bringing Folding Pathways into Strand Pairing Prediction}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {38--48}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_5}, doi = {10.1007/978-3-540-74126-8\_5}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/JeongBP07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KennedyMP07, author = {Justin Kennedy and Ion I. Mandoiu and Bogdan Pasaniuc}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {73--84}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_8}, doi = {10.1007/978-3-540-74126-8\_8}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/KennedyMP07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KimK07, author = {Eagu Kim and John D. Kececioglu}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Inverse Sequence Alignment from Partial Examples}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {359--370}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_33}, doi = {10.1007/978-3-540-74126-8\_33}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/KimK07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KohTHT07, author = {Geoffrey Koh and Lisa Tucker{-}Kellogg and David Hsu and P. S. Thiagarajan}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Composing Globally Consistent Pathway Parameter Estimates Through Belief Propagation}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {420--430}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_39}, doi = {10.1007/978-3-540-74126-8\_39}, timestamp = {Wed, 25 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/KohTHT07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KuksaP07, author = {Pavel P. Kuksa and Vladimir Pavlovic}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Fast Kernel Methods for {SVM} Sequence Classifiers}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {228--239}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_22}, doi = {10.1007/978-3-540-74126-8\_22}, timestamp = {Tue, 11 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/KuksaP07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LangmeadJ07, author = {Christopher James Langmead and Sumit Kumar Jha}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Predicting Protein Folding Kinetics Via Temporal Logic Model Checking}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {252--264}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_24}, doi = {10.1007/978-3-540-74126-8\_24}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LangmeadJ07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LeeS07, author = {Phil Hyoun Lee and Hagit Shatkay}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Two Birds, One Stone: Selecting Functionally Informative Tag SNPs for Disease Association Studies}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {61--72}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_7}, doi = {10.1007/978-3-540-74126-8\_7}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LeeS07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LiuSS07, author = {Chunmei Liu and Yinglei Song and Louis W. Shapiro}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {{RNA} Folding Including Pseudoknots: {A} New Parameterized Algorithm and Improved Upper Bound}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {310--322}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_29}, doi = {10.1007/978-3-540-74126-8\_29}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LiuSS07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LozanoPRVZ07, author = {Antoni Lozano and Ron Y. Pinter and Oleg Rokhlenko and Gabriel Valiente and Michal Ziv{-}Ukelson}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Seeded Tree Alignment and Planar Tanglegram Layout}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {98--110}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_10}, doi = {10.1007/978-3-540-74126-8\_10}, timestamp = {Sat, 16 Sep 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LozanoPRVZ07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MedvedevGMB07, author = {Paul Medvedev and Konstantinos Georgiou and Gene Myers and Michael Brudno}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Computability of Models for Sequence Assembly}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {289--301}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_27}, doi = {10.1007/978-3-540-74126-8\_27}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MedvedevGMB07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MosigCS07, author = {Axel Mosig and Julian J.{-}L. Chen and Peter F. Stadler}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Homology Search with Fragmented Nucleic Acid Sequence Patterns}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {335--345}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_31}, doi = {10.1007/978-3-540-74126-8\_31}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/MosigCS07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/NicosiaS07, author = {Giuseppe Nicosia and Giovanni Stracquadanio}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Generalized Pattern Search and Mesh Adaptive Direct Search Algorithms for Protein Structure Prediction}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {183--193}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_17}, doi = {10.1007/978-3-540-74126-8\_17}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/NicosiaS07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/OzerR07, author = {Hatice Gulcin Ozer and William C. Ray}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Informative Motifs in Protein Family Alignments}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {161--170}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_15}, doi = {10.1007/978-3-540-74126-8\_15}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/OzerR07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/PerteaS07, author = {Mihaela Pertea and Steven Salzberg}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Using Protein Domains to Improve the Accuracy of \emph{Ab Initio} Gene Finding}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {208--215}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_20}, doi = {10.1007/978-3-540-74126-8\_20}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/PerteaS07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Pevzner07, author = {Pavel A. Pevzner}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Shotgun Protein Sequencing}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {1}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_1}, doi = {10.1007/978-3-540-74126-8\_1}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Pevzner07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/RastasU07, author = {Pasi Rastas and Esko Ukkonen}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Haplotype Inference Via Hierarchical Genotype Parsing}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {85--97}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_9}, doi = {10.1007/978-3-540-74126-8\_9}, timestamp = {Sat, 16 Sep 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/RastasU07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SchliepK07, author = {Alexander Schliep and Roland Krause}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Efficient Computational Design of Tiling Arrays Using a Shortest Path Approach}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {383--394}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_36}, doi = {10.1007/978-3-540-74126-8\_36}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SchliepK07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SramekBV07, author = {Rastislav Sr{\'{a}}mek and Brona Brejov{\'{a}} and Tom{\'{a}}s Vinar}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {On-Line Viterbi Algorithm for Analysis of Long Biological Sequences}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {240--251}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_23}, doi = {10.1007/978-3-540-74126-8\_23}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SramekBV07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/TsivtsivadzeBS07, author = {Evgeni Tsivtsivadze and Jorma Boberg and Tapio Salakoski}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Locality Kernels for Protein Classification}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {2--11}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_2}, doi = {10.1007/978-3-540-74126-8\_2}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/TsivtsivadzeBS07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/VarshavskyFML07, author = {Roy Varshavsky and Menachem Fromer and Amit Man and Michal Linial}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {When Less Is More: Improving Classification of Protein Families with a Minimal Set of Global Features}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {12--24}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_3}, doi = {10.1007/978-3-540-74126-8\_3}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/VarshavskyFML07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/VassuraMLMFC07, author = {Marco Vassura and Luciano Margara and Pietro di Lena and Filippo Medri and Piero Fariselli and Rita Casadio}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Fault Tolerance for Large Scale Protein 3D Reconstruction from Contact Maps}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {25--37}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_4}, doi = {10.1007/978-3-540-74126-8\_4}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/VassuraMLMFC07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/WangS07, author = {Xueyi Wang and Jack Snoeyink}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Defining and Computing Optimum {RMSD} for Gapped Multiple Structure Alignment}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {196--207}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_19}, doi = {10.1007/978-3-540-74126-8\_19}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/WangS07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/WuBCL07, author = {Yonghui Wu and Prasanna Bhat and Timothy J. Close and Stefano Lonardi}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Efficient and Accurate Construction of Genetic Linkage Maps from Noisy and Missing Genotyping Data}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {395--406}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_37}, doi = {10.1007/978-3-540-74126-8\_37}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/WuBCL07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ZhiSB07, author = {Degui Zhi and Maxim Shatsky and Steven E. Brenner}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Alignment-Free Local Structural Search by Writhe Decomposition}, booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, pages = {194--195}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8\_18}, doi = {10.1007/978-3-540-74126-8\_18}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ZhiSB07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/wabi/2007, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, title = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4645}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74126-8}, doi = {10.1007/978-3-540-74126-8}, isbn = {978-3-540-74125-1}, timestamp = {Tue, 14 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/2007.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BergeronMS06, author = {Anne Bergeron and Julia Mixtacki and Jens Stoye}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {A Unifying View of Genome Rearrangements}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {163--173}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_16}, doi = {10.1007/11851561\_16}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/BergeronMS06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BlumV06, author = {Christian Blum and Mateu Y{\'{a}}bar Vall{\`{e}}s}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {New Constructive Heuristics for {DNA} Sequencing by Hybridization}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {355--365}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_33}, doi = {10.1007/11851561\_33}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BlumV06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BockerLLP06, author = {Sebastian B{\"{o}}cker and Matthias C. Letzel and Zsuzsanna Lipt{\'{a}}k and Anton Pervukhin}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Decomposing Metabolomic Isotope Patterns}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {12--23}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_2}, doi = {10.1007/11851561\_2}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BockerLLP06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BrinzaZ06, author = {Dumitru Brinza and Alexander Zelikovsky}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Combinatorial Methods for Disease Association Search and Susceptibility Prediction}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {286--297}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_27}, doi = {10.1007/11851561\_27}, timestamp = {Wed, 25 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BrinzaZ06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BurgerN06, author = {Lukas Burger and Erik van Nimwegen}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {A Bayesian Algorithm for Reconstructing Two-Component Signaling Networks}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {44--55}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_5}, doi = {10.1007/11851561\_5}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/BurgerN06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/CarvalhoR06, author = {S{\'{e}}rgio A. de Carvalho and Sven Rahmann}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Improving the Layout of Oligonucleotide Microarrays: Pivot Partitioning}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {321--332}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_30}, doi = {10.1007/11851561\_30}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/CarvalhoR06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ChanCCFK06, author = {Bethany Man{-}Yee Chan and Joseph Wun{-}Tat Chan and Francis Y. L. Chin and Stanley P. Y. Fung and Ming{-}Yang Kao}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Linear-Time Haplotype Inference on Pedigrees Without Recombinations}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {56--67}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_6}, doi = {10.1007/11851561\_6}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ChanCCFK06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/CsurosCGHL06, author = {Mikl{\'{o}}s Cs{\"{u}}r{\"{o}}s and Ming{-}Te Cheng and Andreas Grimm and Amine Halawani and Perrine Landreau}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Segmentation with an Isochore Distribution}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {388--399}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_36}, doi = {10.1007/11851561\_36}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/CsurosCGHL06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DarlingTZKMP06, author = {Aaron E. Darling and Todd J. Treangen and Louxin Zhang and Carla Kuiken and Xavier Messeguer and Nicole T. Perna}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Procrastination Leads to Efficient Filtration for Local Multiple Alignment}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {126--137}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_12}, doi = {10.1007/11851561\_12}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DarlingTZKMP06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/FribergGBSG06, author = {Markus T. Friberg and Pedro Gonnet and Yves Barral and Nicol N. Schraudolph and Gaston H. Gonnet}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Measures of Codon Bias in Yeast, the tRNA Pairing Index and Possible {DNA} Repair Mechanisms}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {1--11}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_1}, doi = {10.1007/11851561\_1}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/FribergGBSG06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GrammHNST06, author = {Jens Gramm and Tzvika Hartman and Till Nierhoff and Roded Sharan and Till Tantau}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {On the Complexity of {SNP} Block Partitioning Under the Perfect Phylogeny Model}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {92--102}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_9}, doi = {10.1007/11851561\_9}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/GrammHNST06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HollandCHM06, author = {Barbara R. Holland and Glenn Conner and Katharina T. Huber and Vincent Moulton}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Imputing Supertrees and Supernetworks from Quartets}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {162}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_15}, doi = {10.1007/11851561\_15}, timestamp = {Tue, 19 Nov 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/HollandCHM06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HongL06, author = {Eun{-}Jong Hong and Tom{\'{a}}s Lozano{-}P{\'{e}}rez}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Protein Side-Chain Placement Through {MAP} Estimation and Problem-Size Reduction}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {219--230}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_21}, doi = {10.1007/11851561\_21}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HongL06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HouBZM06, author = {Minmei Hou and Piotr Berman and Louxin Zhang and Webb Miller}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Controlling Size When Aligning Multiple Genomic Sequences with Duplications}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {138--149}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_13}, doi = {10.1007/11851561\_13}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HouBZM06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HusonSW06, author = {Daniel H. Huson and Mike A. Steel and Jim Whitfield}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Reducing Distortion in Phylogenetic Networks}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {150--161}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_14}, doi = {10.1007/11851561\_14}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HusonSW06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/IerselKKS06, author = {Leo van Iersel and Judith Keijsper and Steven Kelk and Leen Stougie}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Beaches of Islands of Tractability: Algorithms for Parsimony and Minimum Perfect Phylogeny Haplotyping Problems}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {80--91}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_8}, doi = {10.1007/11851561\_8}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/IerselKKS06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/JenkinsLH06, author = {Paul A. Jenkins and Rune B. Lyngs{\o} and Jotun Hein}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {How Many Transcripts Does It Take to Reconstruct the Splice Graph?}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {103--114}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_10}, doi = {10.1007/11851561\_10}, timestamp = {Thu, 23 Dec 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/JenkinsLH06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LiL06, author = {Shuai Cheng Li and Ming Li}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {On the Complexity of the Crossing Contact Map Pattern Matching Problem}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {231--241}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_22}, doi = {10.1007/11851561\_22}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/LiL06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LukszaKOKG06, author = {Marta Luksza and Boguslaw Kluge and Jerzy Ostrowski and Jakub Karczmarski and Anna Gambin}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Efficient Model-Based Clustering for {LC-MS} Data}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {32--43}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_4}, doi = {10.1007/11851561\_4}, timestamp = {Mon, 05 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LukszaKOKG06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MiklosPL06, author = {Istv{\'{a}}n Mikl{\'{o}}s and Timothy Brooks Paige and P{\'{e}}ter Ligeti}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Efficient Sampling of Transpositions and Inverted Transpositions for Bayesian {MCMC}}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {174--185}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_17}, doi = {10.1007/11851561\_17}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MiklosPL06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Parida06, author = {Laxmi Parida}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Gapped Permutation Patterns for Comparative Genomics}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {376--387}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_35}, doi = {10.1007/11851561\_35}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Parida06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/PhillipsRA06, author = {Jeff M. Phillips and Johannes Rudolph and Pankaj K. Agarwal}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Segmenting Motifs in Protein-Protein Interface Surfaces}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {207--218}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_20}, doi = {10.1007/11851561\_20}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/PhillipsRA06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/RahmannK06, author = {Sven Rahmann and Gunnar W. Klau}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Integer Linear Programs for Discovering Approximate Gene Clusters}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {298--309}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_28}, doi = {10.1007/11851561\_28}, timestamp = {Mon, 05 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/RahmannK06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/RokhlenkoSSRP06, author = {Oleg Rokhlenko and Tomer Shlomi and Roded Sharan and Eytan Ruppin and Ron Y. Pinter}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Flux-Based \emph{vs.} Topology-Based Similarity of Metabolic Genes}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {274--285}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_26}, doi = {10.1007/11851561\_26}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/RokhlenkoSSRP06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SandveNSEAD06, author = {Geir Kjetil Sandve and Magnar Nedland and {\O}yvind B{\o} Syrstad and Lars Andreas Eidsheim and Osman Abul and Finn Drabl{\o}s}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Accelerating Motif Discovery: Motif Matching on Parallel Hardware}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {197--206}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_19}, doi = {10.1007/11851561\_19}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/SandveNSEAD06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SongD06, author = {Dandan Song and Zhidong Deng}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {A Fuzzy Dynamic Programming Approach to Predict {RNA} Secondary Structure}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {242--251}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_23}, doi = {10.1007/11851561\_23}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SongD06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SongLMC06, author = {Yinglei Song and Chunmei Liu and Russell L. Malmberg and Liming Cai}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Phylogenetic Network Inferences Through Efficient Haplotyping}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {68--79}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_7}, doi = {10.1007/11851561\_7}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SongLMC06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SteinhofelSA06, author = {Kathleen Steinh{\"{o}}fel and Alexandros Skaliotis and Andreas Alexander Albrecht}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Landscape Analysis for Protein-Folding Simulation in the {H-P} Model}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {252--261}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_24}, doi = {10.1007/11851561\_24}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SteinhofelSA06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/StojanovicB06, author = {Nikola Stojanovic and Piotr Berman}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {A Linear-Time Algorithm for Studying Genetic Variation}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {344--354}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_32}, doi = {10.1007/11851561\_32}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/StojanovicB06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/TerzerS06, author = {Marco Terzer and J{\"{o}}rg Stelling}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Accelerating the Computation of Elementary Modes Using Pattern Trees}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {333--343}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_31}, doi = {10.1007/11851561\_31}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/TerzerS06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Tsur06, author = {Dekel Tsur}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Optimal Probing Patterns for Sequencing by Hybridization}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {366--375}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_34}, doi = {10.1007/11851561\_34}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Tsur06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/VellozoAL06, author = {Augusto F. Vellozo and Carlos E. R. Alves and Alair Pereira do Lago}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Alignment with Non-overlapping Inversions in \emph{O}(\emph{n}\({}^{\mbox{3}}\))-Time}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {186--196}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_18}, doi = {10.1007/11851561\_18}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/VellozoAL06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/WangLL06, author = {Lusheng Wang and Yu Lin and Xiaowen Liu}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Approximation Algorithms for Bi-clustering Problems}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {310--320}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_29}, doi = {10.1007/11851561\_29}, timestamp = {Sat, 09 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/WangLL06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/YeIJI06, author = {Jieping Ye and Ivaylo Ilinkin and Ravi Janardan and Adam Isom}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Multiple Structure Alignment and Consensus Identification for Proteins}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {115--125}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_11}, doi = {10.1007/11851561\_11}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/YeIJI06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ZhaoMC06, author = {Jizhen Zhao and Russell L. Malmberg and Liming Cai}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Rapid \emph{ab initio} {RNA} Folding Including Pseudoknots Via Graph Tree Decomposition}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {262--273}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_25}, doi = {10.1007/11851561\_25}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ZhaoMC06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ZhuWYS06, author = {Hongmei Zhu and Jiaxin Wang and Zehong Yang and Yixu Song}, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {A Method to Design Standard HMMs with Desired Length Distribution for Biological Sequence Analysis}, booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, pages = {24--31}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561\_3}, doi = {10.1007/11851561\_3}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ZhuWYS06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/wabi/2006, editor = {Philipp Bucher and Bernard M. E. Moret}, title = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4175}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11851561}, doi = {10.1007/11851561}, isbn = {3-540-39583-0}, timestamp = {Tue, 14 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/2006.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/AgarwalBK05, author = {Pankaj K. Agarwal and Yonatan Bilu and Rachel Kolodny}, editor = {Rita Casadio and Gene Myers}, title = {Faster Algorithms for Optimal Multiple Sequence Alignment Based on Pairwise Comparisons}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {315--327}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_26}, doi = {10.1007/11557067\_26}, timestamp = {Tue, 14 May 2019 10:00:40 +0200}, biburl = {https://dblp.org/rec/conf/wabi/AgarwalBK05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BauerKR05, author = {Markus Bauer and Gunnar W. Klau and Knut Reinert}, editor = {Rita Casadio and Gene Myers}, title = {Multiple Structural {RNA} Alignment with Lagrangian Relaxation}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {303--314}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_25}, doi = {10.1007/11557067\_25}, timestamp = {Tue, 26 Mar 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/BauerKR05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BerardBCP05, author = {S{\`{e}}verine B{\'{e}}rard and Anne Bergeron and C{\'{e}}dric Chauve and Christophe Paul}, editor = {Rita Casadio and Gene Myers}, title = {Perfect Sorting by Reversals Is Not Always Difficult}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {228--238}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_19}, doi = {10.1007/11557067\_19}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BerardBCP05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BoyerHN05, author = {Robert S. Boyer and Warren A. Hunt Jr. and Serita M. Nelesen}, editor = {Rita Casadio and Gene Myers}, title = {A Compressed Format for Collections of Phylogenetic Trees and Improved Consensus Performance}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {353--364}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_29}, doi = {10.1007/11557067\_29}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BoyerHN05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Brehelin05, author = {Laurent Br{\'{e}}h{\'{e}}lin}, editor = {Rita Casadio and Gene Myers}, title = {Clustering Gene Expression Series with Prior Knowledge}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {27--38}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_3}, doi = {10.1007/11557067\_3}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Brehelin05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ChristiansenMPR05, author = {Chris Christiansen and Thomas Mailund and Christian N. S. Pedersen and Martin Randers}, editor = {Rita Casadio and Gene Myers}, title = {Computing the Quartet Distance Between Trees of Arbitrary Degree}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {77--88}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_7}, doi = {10.1007/11557067\_7}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ChristiansenMPR05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/CilibrasiIKT05, author = {Rudi Cilibrasi and Leo van Iersel and Steven Kelk and John Tromp}, editor = {Rita Casadio and Gene Myers}, title = {On the Complexity of Several Haplotyping Problems}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {128--139}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_11}, doi = {10.1007/11557067\_11}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/CilibrasiIKT05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DaleviD05, author = {Daniel Dalevi and Devdatt P. Dubhashi}, editor = {Rita Casadio and Gene Myers}, title = {The Peres-Shields Order Estimator for Fixed and Variable Length Markov Models with Applications to {DNA} Sequence Similarity}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {291--302}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_24}, doi = {10.1007/11557067\_24}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DaleviD05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/EliasH05, author = {Isaac Elias and Tzvika Hartman}, editor = {Rita Casadio and Gene Myers}, title = {A 1.375-Approximation Algorithm for Sorting by Transpositions}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {204--215}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_17}, doi = {10.1007/11557067\_17}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/EliasH05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/EyalH05, author = {Eran Eyal and Dan Halperin}, editor = {Rita Casadio and Gene Myers}, title = {Improved Maintenance of Molecular Surfaces Using Dynamic Graph Connectivity}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {401--413}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_33}, doi = {10.1007/11557067\_33}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/EyalH05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GanapathyGJRW05, author = {Ganeshkumar Ganapathy and Barbara Goodson and Robert K. Jansen and Vijaya Ramachandran and Tandy J. Warnow}, editor = {Rita Casadio and Gene Myers}, title = {Pattern Identification in Biogeography}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {116--127}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_10}, doi = {10.1007/11557067\_10}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/GanapathyGJRW05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Kister05, author = {Alexander Kister}, editor = {Rita Casadio and Gene Myers}, title = {The Main Structural Regularities of the Sandwich Proteins}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {414--422}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_34}, doi = {10.1007/11557067\_34}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Kister05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KucherovNR05, author = {Gregory Kucherov and Laurent No{\'{e}} and Mikhail A. Roytberg}, editor = {Rita Casadio and Gene Myers}, title = {A Unifying Framework for Seed Sensitivity and Its Application to Subset Seeds}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {251--263}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_21}, doi = {10.1007/11557067\_21}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/KucherovNR05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Labarre05, author = {Anthony Labarre}, editor = {Rita Casadio and Gene Myers}, title = {A New Tight Upper Bound on the Transposition Distance}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {216--227}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_18}, doi = {10.1007/11557067\_18}, timestamp = {Mon, 05 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Labarre05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LacroixFS05, author = {Vincent Lacroix and Cristina G. Fernandes and Marie{-}France Sagot}, editor = {Rita Casadio and Gene Myers}, title = {Reaction Motifs in Metabolic Networks}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {178--191}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_15}, doi = {10.1007/11557067\_15}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/LacroixFS05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LaskerDNW05, author = {Keren Lasker and Oranit Dror and Ruth Nussinov and Haim J. Wolfson}, editor = {Rita Casadio and Gene Myers}, title = {Discovery of Protein Substructures in {EM} Maps}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {423--434}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_35}, doi = {10.1007/11557067\_35}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LaskerDNW05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Leaver-FayKS05, author = {Andrew Leaver{-}Fay and Brian Kuhlman and Jack Snoeyink}, editor = {Rita Casadio and Gene Myers}, title = {Rotamer-Pair Energy Calculations Using a Trie Data Structure}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {389--400}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_32}, doi = {10.1007/11557067\_32}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/Leaver-FayKS05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LeungC05, author = {Henry C. M. Leung and Francis Y. L. Chin}, editor = {Rita Casadio and Gene Myers}, title = {Generalized Planted (\emph{l}, \emph{d})-Motif Problem with Negative Set}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {264--275}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_22}, doi = {10.1007/11557067\_22}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LeungC05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LyngsoSH05, author = {Rune B. Lyngs{\o} and Yun S. Song and Jotun Hein}, editor = {Rita Casadio and Gene Myers}, title = {Minimum Recombination Histories by Branch and Bound}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {239--250}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_20}, doi = {10.1007/11557067\_20}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LyngsoSH05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MadeiraO05, author = {Sara C. Madeira and Arlindo L. Oliveira}, editor = {Rita Casadio and Gene Myers}, title = {A Linear Time Biclustering Algorithm for Time Series Gene Expression Data}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {39--52}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_4}, doi = {10.1007/11557067\_4}, timestamp = {Sat, 24 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/MadeiraO05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MoranRS05, author = {Shlomo Moran and Satish Rao and Sagi Snir}, editor = {Rita Casadio and Gene Myers}, title = {Using Semi-definite Programming to Enhance Supertree Resolvability}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {89--103}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_8}, doi = {10.1007/11557067\_8}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MoranRS05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/PengT05, author = {Zeshan Peng and H. F. Ting}, editor = {Rita Casadio and Gene Myers}, title = {An Efficient Reduction from Constrained to Unconstrained Maximum Agreement Subtree}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {104--115}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_9}, doi = {10.1007/11557067\_9}, timestamp = {Wed, 11 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/PengT05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/RastasKMU05, author = {Pasi Rastas and Mikko Koivisto and Heikki Mannila and Esko Ukkonen}, editor = {Rita Casadio and Gene Myers}, title = {A Hidden Markov Technique for Haplotype Reconstruction}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {140--151}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_12}, doi = {10.1007/11557067\_12}, timestamp = {Sat, 16 Sep 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/RastasKMU05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/RastegariC05, author = {Baharak Rastegari and Anne Condon}, editor = {Rita Casadio and Gene Myers}, title = {Linear Time Algorithm for Parsing {RNA} Secondary Structure}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {341--352}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_28}, doi = {10.1007/11557067\_28}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/RastegariC05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SammethWHS05, author = {Michael Sammeth and Thomas Weniger and Dag Harmsen and Jens Stoye}, editor = {Rita Casadio and Gene Myers}, title = {Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels {(EDSI)}}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {276--290}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_23}, doi = {10.1007/11557067\_23}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/SammethWHS05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SongLHMXC05, author = {Yinglei Song and Chunmei Liu and Xiuzhen Huang and Russell L. Malmberg and Ying Xu and Liming Cai}, editor = {Rita Casadio and Gene Myers}, title = {Efficient Parameterized Algorithm for Biopolymer Structure-Sequence Alignment}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {376--388}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_31}, doi = {10.1007/11557067\_31}, timestamp = {Thu, 08 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SongLHMXC05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SongWG05, author = {Yun S. Song and Yufeng Wu and Dan Gusfield}, editor = {Rita Casadio and Gene Myers}, title = {Algorithms for Imperfect Phylogeny Haplotyping {(IPPH)} with a Single Homoplasy or Recombination Event}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {152--164}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_13}, doi = {10.1007/11557067\_13}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SongWG05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SpeerSZ05, author = {Nora Speer and Christian Spieth and Andreas Zell}, editor = {Rita Casadio and Gene Myers}, title = {Spectral Clustering Gene Ontology Terms to Group Genes by Function}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {1--12}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_1}, doi = {10.1007/11557067\_1}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SpeerSZ05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/TuckerM05, author = {Warwick Tucker and Vincent Moulton}, editor = {Rita Casadio and Gene Myers}, title = {Reconstructing Metabolic Networks Using Interval Analysis}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {192--203}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_16}, doi = {10.1007/11557067\_16}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/TuckerM05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/TullerOMCC05, author = {Tamir Tuller and Efrat Oron and Erez Makavy and Daniel A. Chamovitz and Benny Chor}, editor = {Rita Casadio and Gene Myers}, title = {Time-Window Analysis of Developmental Gene Expression Data with Multiple Genetic Backgrounds}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {53--64}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_5}, doi = {10.1007/11557067\_5}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/TullerOMCC05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/VashistKM05, author = {Akshay Vashist and Casimir A. Kulikowski and Ilya B. Muchnik}, editor = {Rita Casadio and Gene Myers}, title = {Ortholog Clustering on a Multipartite Graph}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {328--340}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_27}, doi = {10.1007/11557067\_27}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/VashistKM05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/VeberYAP05, author = {Philippe Veber and Nicola Yanev and Rumen Andonov and Vincent Poirriez}, editor = {Rita Casadio and Gene Myers}, title = {Optimal Protein Threading by Cost-Splitting}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {365--375}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_30}, doi = {10.1007/11557067\_30}, timestamp = {Mon, 05 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/VeberYAP05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Wernicke05, author = {Sebastian Wernicke}, editor = {Rita Casadio and Gene Myers}, title = {A Faster Algorithm for Detecting Network Motifs}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {165--177}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_14}, doi = {10.1007/11557067\_14}, timestamp = {Sun, 20 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/Wernicke05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/WuYL05, author = {Gang Wu and Jia{-}Huai You and Guohui Lin}, editor = {Rita Casadio and Gene Myers}, title = {A Lookahead Branch-and-Bound Algorithm for the Maximum Quartet Consistency Problem}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {65--76}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_6}, doi = {10.1007/11557067\_6}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/WuYL05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ZilbersteinZ05, author = {Chaya Ben{-}Zaken Zilberstein and Michal Ziv{-}Ukelson}, editor = {Rita Casadio and Gene Myers}, title = {Dynamic De-Novo Prediction of microRNAs Associated with Cell Conditions: {A} Search Pruned by Expression}, booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, pages = {13--26}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067\_2}, doi = {10.1007/11557067\_2}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ZilbersteinZ05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/wabi/2005, editor = {Rita Casadio and Gene Myers}, title = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005, Mallorca, Spain, October 3-6, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3692}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11557067}, doi = {10.1007/11557067}, isbn = {3-540-29008-7}, timestamp = {Tue, 14 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/2005.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/AllaliS04, author = {Julien Allali and Marie{-}France Sagot}, editor = {Inge Jonassen and Junhyong Kim}, title = {Novel Tree Edit Operations for {RNA} Secondary Structure Comparison}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {412--425}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_35}, doi = {10.1007/978-3-540-30219-3\_35}, timestamp = {Tue, 14 May 2019 10:00:40 +0200}, biburl = {https://dblp.org/rec/conf/wabi/AllaliS04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/AngelovHKKKW04, author = {Stanislav Angelov and Boulos Harb and Sampath Kannan and Sanjeev Khanna and Junhyong Kim and Li{-}San Wang}, editor = {Inge Jonassen and Junhyong Kim}, title = {Genome Identification and Classification by Short Oligo Arrays}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {400--411}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_34}, doi = {10.1007/978-3-540-30219-3\_34}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/AngelovHKKKW04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/AngelovKLP04, author = {Stanislav Angelov and Sanjeev Khanna and Li Li and Fernando Pereira}, editor = {Inge Jonassen and Junhyong Kim}, title = {{ATDD:} An Algorithmic Tool for Domain Discovery in Protein Sequences}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {206--217}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_18}, doi = {10.1007/978-3-540-30219-3\_18}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/AngelovKLP04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ApostolicoP04, author = {Alberto Apostolico and Cinzia Pizzi}, editor = {Inge Jonassen and Junhyong Kim}, title = {Monotone Scoring of Patterns with Mismatches: (Extended Abstract)}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {87--98}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_8}, doi = {10.1007/978-3-540-30219-3\_8}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ApostolicoP04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Balev04, author = {Stefan Balev}, editor = {Inge Jonassen and Junhyong Kim}, title = {Solving the Protein Threading Problem by Lagrangian Relaxation}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {182--193}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_16}, doi = {10.1007/978-3-540-30219-3\_16}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Balev04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BannaiHSTNM04, author = {Hideo Bannai and Heikki Hyyr{\"{o}} and Ayumi Shinohara and Masayuki Takeda and Kenta Nakai and Satoru Miyano}, editor = {Inge Jonassen and Junhyong Kim}, title = {Finding Optimal Pairs of Patterns}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {450--462}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_38}, doi = {10.1007/978-3-540-30219-3\_38}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BannaiHSTNM04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BehzadiS04, author = {Behshad Behzadi and Jean{-}Marc Steyaert}, editor = {Inge Jonassen and Junhyong Kim}, title = {The Minisatellite Transformation Problem Revisited: {A} Run Length Encoded Approach}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {290--301}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_25}, doi = {10.1007/978-3-540-30219-3\_25}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BehzadiS04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Berger-Wolf04, author = {Tanya Y. Berger{-}Wolf}, editor = {Inge Jonassen and Junhyong Kim}, title = {Online Consensus and Agreement of Phylogenetic Trees}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {350--361}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_30}, doi = {10.1007/978-3-540-30219-3\_30}, timestamp = {Mon, 05 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Berger-Wolf04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BergeronBCC04, author = {Anne Bergeron and Mathieu Blanchette and Annie Chateau and C{\'{e}}dric Chauve}, editor = {Inge Jonassen and Junhyong Kim}, title = {Reconstructing Ancestral Gene Orders Using Conserved Intervals}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {14--25}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_2}, doi = {10.1007/978-3-540-30219-3\_2}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BergeronBCC04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BertrandG04, author = {Denis Bertrand and Olivier Gascuel}, editor = {Inge Jonassen and Junhyong Kim}, title = {Topological Rearrangements and Local Search Method for Tandem Duplication Trees}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {374--387}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_32}, doi = {10.1007/978-3-540-30219-3\_32}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BertrandG04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BrejovaBV04, author = {Brona Brejov{\'{a}} and Daniel G. Brown and Tom{\'{a}}s Vinar}, editor = {Inge Jonassen and Junhyong Kim}, title = {The Most Probable Labeling Problem in HMMs and Its Application to Bioinformatics}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {426--437}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_36}, doi = {10.1007/978-3-540-30219-3\_36}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BrejovaBV04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Brown04, author = {Daniel G. Brown}, editor = {Inge Jonassen and Junhyong Kim}, title = {Multiple Vector Seeds for Protein Alignment}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {170--181}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_15}, doi = {10.1007/978-3-540-30219-3\_15}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Brown04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BrownH04, author = {Daniel G. Brown and Ian M. Harrower}, editor = {Inge Jonassen and Junhyong Kim}, title = {A New Integer Programming Formulation for the Pure Parsimony Problem in Haplotype Analysis}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {254--265}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_22}, doi = {10.1007/978-3-540-30219-3\_22}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BrownH04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BrownH04a, author = {Daniel G. Brown and Alexander K. Hudek}, editor = {Inge Jonassen and Junhyong Kim}, title = {New Algorithms for Multiple {DNA} Sequence Alignment}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {314--325}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_27}, doi = {10.1007/978-3-540-30219-3\_27}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BrownH04a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ChoiAER04, author = {Vicky Choi and Pankaj K. Agarwal and Herbert Edelsbrunner and Johannes Rudolph}, editor = {Inge Jonassen and Junhyong Kim}, title = {Local Search Heuristic for Rigid Protein Docking}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {218--229}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_19}, doi = {10.1007/978-3-540-30219-3\_19}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ChoiAER04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ChorT04, author = {Benny Chor and Tamir Tuller}, editor = {Inge Jonassen and Junhyong Kim}, title = {Adding Hidden Nodes to Gene Networks (Extended Abstract)}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {123--134}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_11}, doi = {10.1007/978-3-540-30219-3\_11}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ChorT04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Csuros04, author = {Mikl{\'{o}}s Cs{\"{u}}r{\"{o}}s}, editor = {Inge Jonassen and Junhyong Kim}, title = {Algorithms for Finding Maximal-Scoring Segment Sets (Extended Abstract)}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {62--73}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_6}, doi = {10.1007/978-3-540-30219-3\_6}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Csuros04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Earnest-DeYoungLM04, author = {Joel V. Earnest{-}DeYoung and Emmanuelle Lerat and Bernard M. E. Moret}, editor = {Inge Jonassen and Junhyong Kim}, title = {Reversing Gene Erosion - Reconstructing Ancestral Bacterial Genomes from Gene-Content and Order Data}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {1--13}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_1}, doi = {10.1007/978-3-540-30219-3\_1}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Earnest-DeYoungLM04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/EdwardsL04, author = {Nathan Edwards and Ross Lippert}, editor = {Inge Jonassen and Junhyong Kim}, title = {Sequence Database Compression for Peptide Identification from Tandem Mass Spectra}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {230--241}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_20}, doi = {10.1007/978-3-540-30219-3\_20}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/EdwardsL04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/FigeacV04, author = {Martin Figeac and Jean{-}St{\'{e}}phane Varr{\'{e}}}, editor = {Inge Jonassen and Junhyong Kim}, title = {Sorting by Reversals with Common Intervals}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {26--37}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_3}, doi = {10.1007/978-3-540-30219-3\_3}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/FigeacV04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Gramm04, author = {Jens Gramm}, editor = {Inge Jonassen and Junhyong Kim}, title = {A Polynomial-Time Algorithm for the Matching of Crossing Contact-Map Patterns}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {38--49}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_4}, doi = {10.1007/978-3-540-30219-3\_4}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Gramm04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HartmanS04, author = {Tzvika Hartman and Roded Sharan}, editor = {Inge Jonassen and Junhyong Kim}, title = {A 1.5-Approximation Algorithm for Sorting by Transpositions and Transreversals}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {50--61}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_5}, doi = {10.1007/978-3-540-30219-3\_5}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HartmanS04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HeZ04, author = {Jingwu He and Alexander Zelikovsky}, editor = {Inge Jonassen and Junhyong Kim}, title = {Linear Reduction for Haplotype Inference}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {242--253}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_21}, doi = {10.1007/978-3-540-30219-3\_21}, timestamp = {Wed, 25 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HeZ04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HuangZCC04, author = {Yao{-}Ting Huang and Kui Zhang and Ting Chen and Kun{-}Mao Chao}, editor = {Inge Jonassen and Junhyong Kim}, title = {Approximation Algorithms for the Selection of Robust Tag SNPs}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {278--289}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_24}, doi = {10.1007/978-3-540-30219-3\_24}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HuangZCC04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HusonDKS04, author = {Daniel H. Huson and Tobias Dezulian and Tobias H. Kl{\"{o}}pper and Mike A. Steel}, editor = {Inge Jonassen and Junhyong Kim}, title = {Phylogenetic Super-networks from Partial Trees}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {388--399}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_33}, doi = {10.1007/978-3-540-30219-3\_33}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HusonDKS04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/InenagaKM04, author = {Shunsuke Inenaga and Teemu Kivioja and Veli M{\"{a}}kinen}, editor = {Inge Jonassen and Junhyong Kim}, title = {Finding Missing Patterns}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {463--474}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_39}, doi = {10.1007/978-3-540-30219-3\_39}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/InenagaKM04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/JanssonNSW04, author = {Jesper Jansson and See{-}Kiong Ng and Wing{-}Kin Sung and Hugo Willy}, editor = {Inge Jonassen and Junhyong Kim}, title = {A Faster and More Space-Efficient Algorithm for Inferring Arc-Annotations of {RNA} Sequences Through Alignment}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {302--313}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_26}, doi = {10.1007/978-3-540-30219-3\_26}, timestamp = {Tue, 17 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/JanssonNSW04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KeichN04, author = {Uri Keich and Niranjan Nagarajan}, editor = {Inge Jonassen and Junhyong Kim}, title = {A Faster Reliable Algorithm to Estimate the p-Value of the Multinomial llr Statistic}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {111--122}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_10}, doi = {10.1007/978-3-540-30219-3\_10}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/KeichN04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LiLZ04, author = {Guoliang Li and Tze{-}Yun Leong and Louxin Zhang}, editor = {Inge Jonassen and Junhyong Kim}, title = {Translation Initiation Sites Prediction with Mixture Gaussian Models}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {338--349}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_29}, doi = {10.1007/978-3-540-30219-3\_29}, timestamp = {Fri, 10 Nov 2017 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/LiLZ04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LipsonBDY04, author = {Doron Lipson and Amir Ben{-}Dor and Elinor Dehan and Zohar Yakhini}, editor = {Inge Jonassen and Junhyong Kim}, title = {Joint Analysis of {DNA} Copy Numbers and Gene Expression Levels}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {135--146}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_12}, doi = {10.1007/978-3-540-30219-3\_12}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LipsonBDY04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LiskiewiczPR04, author = {Maciej Liskiewicz and Hemant J. Purohit and Dhananjay V. Raje}, editor = {Inge Jonassen and Junhyong Kim}, title = {Relation of Residues in the Variable Region of 16S rDNA Sequences and Their Relevance to Genus-Specificity}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {362--373}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_31}, doi = {10.1007/978-3-540-30219-3\_31}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LiskiewiczPR04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MichaelDS04, author = {Morris Michael and Christoph Dieterich and Jens Stoye}, editor = {Inge Jonassen and Junhyong Kim}, title = {Suboptimal Local Alignments Across Multiple Scoring Schemes}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {99--110}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_9}, doi = {10.1007/978-3-540-30219-3\_9}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/MichaelDS04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/NarayananK04, author = {Manikandan Narayanan and Richard M. Karp}, editor = {Inge Jonassen and Junhyong Kim}, title = {Gapped Local Similarity Search with Provable Guarantees}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {74--86}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_7}, doi = {10.1007/978-3-540-30219-3\_7}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/NarayananK04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/PanconesiS04, author = {Alessandro Panconesi and Mauro Sozio}, editor = {Inge Jonassen and Junhyong Kim}, title = {Fast Hare: {A} Fast Heuristic for Single Individual {SNP} Haplotype Reconstruction}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {266--277}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_23}, doi = {10.1007/978-3-540-30219-3\_23}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/PanconesiS04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ShigemizuM04, author = {Daichi Shigemizu and Osamu Maruyama}, editor = {Inge Jonassen and Junhyong Kim}, title = {Searching for Regulatory Elements of Alternative Splicing Events Using Phylogenetic Footprinting}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {147--158}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_13}, doi = {10.1007/978-3-540-30219-3\_13}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ShigemizuM04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Shulman-PelegMNW04, author = {Alexandra Shulman{-}Peleg and Shira Mintz and Ruth Nussinov and Haim J. Wolfson}, editor = {Inge Jonassen and Junhyong Kim}, title = {Protein-Protein Interfaces: Recognition of Similar Spatial and Chemical Organizations}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {194--205}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_17}, doi = {10.1007/978-3-540-30219-3\_17}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Shulman-PelegMNW04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SoinovKK04, author = {Lev Soinov and Alexander Kanapin and Misha Kapushesky}, editor = {Inge Jonassen and Junhyong Kim}, title = {Supervised Learning-Aided Optimization of Expert-Driven Functional Protein Sequence Annotation}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {159--169}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_14}, doi = {10.1007/978-3-540-30219-3\_14}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/SoinovKK04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SundararajanBSSB04, author = {Mukund Sundararajan and Michael Brudno and Kerrin S. Small and Arend Sidow and Serafim Batzoglou}, editor = {Inge Jonassen and Junhyong Kim}, title = {Chaining Algorithms for Alignment of Draft Sequence}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {326--337}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_28}, doi = {10.1007/978-3-540-30219-3\_28}, timestamp = {Tue, 26 Mar 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/SundararajanBSSB04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SzeLC04, author = {Sing{-}Hoi Sze and Songjian Lu and Jianer Chen}, editor = {Inge Jonassen and Junhyong Kim}, title = {Integrating Sample-Driven and Pattern-Driven Approaches in Motif Finding}, booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, pages = {438--449}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30219-3\_37}, doi = {10.1007/978-3-540-30219-3\_37}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SzeLC04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/wabi/2004, editor = {Inge Jonassen and Junhyong Kim}, title = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004, Bergen, Norway, September 17-21, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3240}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/b100405}, doi = {10.1007/B100405}, isbn = {3-540-23018-1}, timestamp = {Tue, 14 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/2004.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/AbouelhodaO03, author = {Mohamed Ibrahim Abouelhoda and Enno Ohlebusch}, editor = {Gary Benson and Roderic D. M. Page}, title = {A Local Chaining Algorithm and Its Applications in Comparative Genomics}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {1--16}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_1}, doi = {10.1007/978-3-540-39763-2\_1}, timestamp = {Tue, 14 May 2019 10:00:40 +0200}, biburl = {https://dblp.org/rec/conf/wabi/AbouelhodaO03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Addario-BerryCHLPW03, author = {Louigi Addario{-}Berry and Benny Chor and Michael T. Hallett and Jens Lagergren and Alessandro Panconesi and Todd Wareham}, editor = {Gary Benson and Roderic D. M. Page}, title = {Ancestral Maximum Likelihood of Evolutionary Trees Is Hard}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {202--215}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_16}, doi = {10.1007/978-3-540-39763-2\_16}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Addario-BerryCHLPW03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/AmentaCJ03, author = {Nina Amenta and Frederick Clarke and Katherine St. John}, editor = {Gary Benson and Roderic D. M. Page}, title = {A Linear-Time Majority Tree Algorithm}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {216--227}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_17}, doi = {10.1007/978-3-540-39763-2\_17}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/AmentaCJ03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/AumannMY03, author = {Yonatan Aumann and Efrat Manisterski and Zohar Yakhini}, editor = {Gary Benson and Roderic D. M. Page}, title = {Designing Optimally Multiplexed {SNP} Genotyping Assays}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {320--338}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_24}, doi = {10.1007/978-3-540-39763-2\_24}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/AumannMY03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Benson03, author = {Gary Benson}, editor = {Gary Benson and Roderic D. M. Page}, title = {Composition Alignment}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {447--461}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_32}, doi = {10.1007/978-3-540-39763-2\_32}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Benson03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BlazewiczJ03, author = {Jacek Blazewicz and Marcin Jaroszewski}, editor = {Gary Benson and Roderic D. M. Page}, title = {New Algorithm for the Simplified Partial Digest Problem}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {95--110}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_8}, doi = {10.1007/978-3-540-39763-2\_8}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/BlazewiczJ03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BocM03, author = {Alix Boc and Vladimir Makarenkov}, editor = {Gary Benson and Roderic D. M. Page}, title = {New Efficient Algorithm for Detection of Horizontal Gene Transfer Events}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {190--201}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_15}, doi = {10.1007/978-3-540-39763-2\_15}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BocM03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Bocker03, author = {Sebastian B{\"{o}}cker}, editor = {Gary Benson and Roderic D. M. Page}, title = {Sequencing from Compomers: Using Mass Spectrometry for {DNA} De-Novo Sequencing of 200+ nt}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {476--497}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_34}, doi = {10.1007/978-3-540-39763-2\_34}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Bocker03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BonizzoniPR03, author = {Paola Bonizzoni and Graziano Pesole and Raffaella Rizzi}, editor = {Gary Benson and Roderic D. M. Page}, title = {A Method to Detect Gene Structure and Alternative Splice Sites by Agreeing ESTs to a Genomic Sequence}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {63--77}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_6}, doi = {10.1007/978-3-540-39763-2\_6}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BonizzoniPR03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BrejovaBV03, author = {Brona Brejov{\'{a}} and Daniel G. Brown and Tom{\'{a}}s Vinar}, editor = {Gary Benson and Roderic D. M. Page}, title = {Vector Seeds: An Extension to Spaced Seeds Allows Substantial Improvements in Sensitivity and Specifity}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {39--54}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_4}, doi = {10.1007/978-3-540-39763-2\_4}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BrejovaBV03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BrejovaBV03a, author = {Brona Brejov{\'{a}} and Daniel G. Brown and Tom{\'{a}}s Vinar}, editor = {Gary Benson and Roderic D. M. Page}, title = {Optimal {DNA} Signal Recognition Models with a Fixed Amount of Intrasignal Dependency}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {78--94}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_7}, doi = {10.1007/978-3-540-39763-2\_7}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BrejovaBV03a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BrodalFOPR03, author = {Gerth St{\o}lting Brodal and Rolf Fagerberg and Anna {\"{O}}stlin and Christian N. S. Pedersen and S. Srinivasa Rao}, editor = {Gary Benson and Roderic D. M. Page}, title = {Computing Refined Buneman Trees in Cubic Time}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {259--270}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_20}, doi = {10.1007/978-3-540-39763-2\_20}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BrodalFOPR03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BryantHKN03, author = {David Bryant and Daniel H. Huson and Tobias H. Kl{\"{o}}pper and Kay Nieselt{-}Struwe}, editor = {Gary Benson and Roderic D. M. Page}, title = {Distance Corrections on Recombinant Sequences}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {271--286}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_21}, doi = {10.1007/978-3-540-39763-2\_21}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BryantHKN03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/CieliebakEP03, author = {Mark Cieliebak and Stephan J. Eidenbenz and Paolo Penna}, editor = {Gary Benson and Roderic D. M. Page}, title = {Noisy Data Make the Partial Digest Problem NP-hard}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {111--123}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_9}, doi = {10.1007/978-3-540-39763-2\_9}, timestamp = {Wed, 11 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/CieliebakEP03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ColingeMM03, author = {Jacques Colinge and Alexandre Masselot and J{\'{e}}r{\^{o}}me Magnin}, editor = {Gary Benson and Roderic D. M. Page}, title = {A Systematic Statistical Analysis of Ion Trap Tandem Mass Spectra in View of Peptide Scoring}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {25--38}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_3}, doi = {10.1007/978-3-540-39763-2\_3}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ColingeMM03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Didier03, author = {Gilles Didier}, editor = {Gary Benson and Roderic D. M. Page}, title = {Common Intervals of Two Sequences}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {17--24}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_2}, doi = {10.1007/978-3-540-39763-2\_2}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Didier03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DoiLJ03, author = {Koichiro Doi and Jing Li and Tao Jiang}, editor = {Gary Benson and Roderic D. M. Page}, title = {Minimum Recombiant Haplotype Configuration on Tree Pedigrees}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {339--353}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_25}, doi = {10.1007/978-3-540-39763-2\_25}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DoiLJ03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/EresLP03, author = {Revital Eres and Gad M. Landau and Laxmi Parida}, editor = {Gary Benson and Roderic D. M. Page}, title = {A Combinatorial Approach to Automatic Discovery of Cluster-Patterns}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {139--150}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_11}, doi = {10.1007/978-3-540-39763-2\_11}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/EresLP03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/FredslundHS03, author = {Jakob Fredslund and Jotun Hein and Tejs Scharling}, editor = {Gary Benson and Roderic D. M. Page}, title = {A Large Version of the Small Parsimony Problem}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {417--432}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_30}, doi = {10.1007/978-3-540-39763-2\_30}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/FredslundHS03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GanapathyRW03, author = {Ganeshkumar Ganapathy and Vijaya Ramachandran and Tandy J. Warnow}, editor = {Gary Benson and Roderic D. M. Page}, title = {Better Hill-Climbing Searches for Parsimony}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {245--258}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_19}, doi = {10.1007/978-3-540-39763-2\_19}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/GanapathyRW03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HollandM03, author = {Barbara R. Holland and Vincent Moulton}, editor = {Gary Benson and Roderic D. M. Page}, title = {Consensus Networks: {A} Method for Visualising Incompatibilities in Collections of Trees}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {165--176}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_13}, doi = {10.1007/978-3-540-39763-2\_13}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HollandM03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HollasS03, author = {Boris Hollas and Rainer Schuler}, editor = {Gary Benson and Roderic D. M. Page}, title = {A Stochastic Approach to Count {RNA} Molecules Using {DNA} Sequencing Methods}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {55--62}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_5}, doi = {10.1007/978-3-540-39763-2\_5}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HollasS03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KearneyMP03, author = {Paul E. Kearney and J. Ian Munro and Derek Phillips}, editor = {Gary Benson and Roderic D. M. Page}, title = {Efficient Generation of Uniform Samples from Phylogenetic Trees}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {177--189}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_14}, doi = {10.1007/978-3-540-39763-2\_14}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/KearneyMP03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KimmelSS03, author = {Gad Kimmel and Roded Sharan and Ron Shamir}, editor = {Gary Benson and Roderic D. M. Page}, title = {Identifying Blocks and Sub-populations in Noisy {SNP} Data}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {303--319}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_23}, doi = {10.1007/978-3-540-39763-2\_23}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/KimmelSS03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Knudsen03, author = {Bjarne Knudsen}, editor = {Gary Benson and Roderic D. M. Page}, title = {Optimal Multiple Parsimony Alignment with Affine Gap Cost Using a Phylogenetic Tree}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {433--446}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_31}, doi = {10.1007/978-3-540-39763-2\_31}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Knudsen03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LotanSL03, author = {Itay Lotan and Fabian Schwarzer and Jean{-}Claude Latombe}, editor = {Gary Benson and Roderic D. M. Page}, title = {Efficient Energy Computation for Monte Carlo Simulation of Proteins}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {354--373}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_26}, doi = {10.1007/978-3-540-39763-2\_26}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LotanSL03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LunterMDJH03, author = {Gerton Lunter and Istv{\'{a}}n Mikl{\'{o}}s and Alexei J. Drummond and Jens Ledet Jensen and Jotun Hein}, editor = {Gary Benson and Roderic D. M. Page}, title = {Bayesian Phylogenetic Inference under a Statistical Insertion-Deletion Model}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {228--244}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_18}, doi = {10.1007/978-3-540-39763-2\_18}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LunterMDJH03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MancheronR03, author = {Alban Mancheron and Irena Rusu}, editor = {Gary Benson and Roderic D. M. Page}, title = {Pattern Discovery Allowing Wild-Cards, Substitution Matrices, and Multiple Score Functions}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {124--138}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_10}, doi = {10.1007/978-3-540-39763-2\_10}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MancheronR03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/PrasadSCV03, author = {Jahnavi C. Prasad and Michael Silberstein and Carlos J. Camacho and Sandor Vajda}, editor = {Gary Benson and Roderic D. M. Page}, title = {Homology Modeling of Proteins Using Multiple Models and Consensus Sequence Alignment}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {389--401}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_28}, doi = {10.1007/978-3-540-39763-2\_28}, timestamp = {Sat, 24 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/PrasadSCV03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Rahmann03, author = {Sven Rahmann}, editor = {Gary Benson and Roderic D. M. Page}, title = {Dynamic Programming Algorithms for Two Statistical Problems in Computational Biology}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {151--164}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_12}, doi = {10.1007/978-3-540-39763-2\_12}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Rahmann03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ShibuyaK03, author = {Tetsuo Shibuya and Igor Kurochkin}, editor = {Gary Benson and Roderic D. M. Page}, title = {Match Chaining Algorithms for cDNA Mapping}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {462--475}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_33}, doi = {10.1007/978-3-540-39763-2\_33}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ShibuyaK03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SongH03, author = {Yun S. Song and Jotun Hein}, editor = {Gary Benson and Roderic D. M. Page}, title = {Parsimonious Reconstruction of Sequence Evolution and Haplotype Blocks}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {287--302}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_22}, doi = {10.1007/978-3-540-39763-2\_22}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SongH03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SouvenirBSZ03, author = {Richard Souvenir and Jeremy Buhler and Gary D. Stormo and Weixiong Zhang}, editor = {Gary Benson and Roderic D. M. Page}, title = {Selecting Degenerate Multiplex {PCR} Primers}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {512--526}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_36}, doi = {10.1007/978-3-540-39763-2\_36}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/SouvenirBSZ03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Spriet03, author = {Jan A. Spriet}, editor = {Gary Benson and Roderic D. M. Page}, title = {Side-Chain Structure Prediction Based on Dead-End Elimination: Single Split DEE-criterion Implementation and Elimination Power}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {402--416}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_29}, doi = {10.1007/978-3-540-39763-2\_29}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Spriet03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Tsur03, author = {Dekel Tsur}, editor = {Gary Benson and Roderic D. M. Page}, title = {Bounds for Resquencing by Hybridization}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {498--511}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_35}, doi = {10.1007/978-3-540-39763-2\_35}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Tsur03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Xu03, author = {Jinbo Xu}, editor = {Gary Benson and Roderic D. M. Page}, title = {Speedup {LP} Approach to Protein Threading via Graph Reduction}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {374--388}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_27}, doi = {10.1007/978-3-540-39763-2\_27}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Xu03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/wabi/2003, editor = {Gary Benson and Roderic D. M. Page}, title = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/b13243}, doi = {10.1007/B13243}, isbn = {3-540-20076-2}, timestamp = {Tue, 14 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/2003.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/AbouelhodaKO02, author = {Mohamed Ibrahim Abouelhoda and Stefan Kurtz and Enno Ohlebusch}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {The Enhanced Suffix Array and Its Applications to Genome Analysis}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {449--463}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_35}, doi = {10.1007/3-540-45784-4\_35}, timestamp = {Tue, 14 May 2019 10:00:40 +0200}, biburl = {https://dblp.org/rec/conf/wabi/AbouelhodaKO02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/AdebiyiK02, author = {Ezekiel F. Adebiyi and Michael Kaufmann}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Extracting Common Motifs under the Levenshtein Measure: Theory and Experimentation}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {140--156}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_11}, doi = {10.1007/3-540-45784-4\_11}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/AdebiyiK02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/AjanaLTE02, author = {Yasmine Ajana and Jean{-}Fran{\c{c}}ois Lefebvre and Elisabeth R. M. Tillier and Nadia El{-}Mabrouk}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Exploring the Set of All Minimal Sequences of Reversals - An Application to Test the Replication-Directed Reversal Hypothesis}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {300--315}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_23}, doi = {10.1007/3-540-45784-4\_23}, timestamp = {Tue, 01 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/AjanaLTE02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Bar-JosephDGHJS02, author = {Ziv Bar{-}Joseph and Erik D. Demaine and David K. Gifford and Ang{\`{e}}le M. Hamel and Tommi S. Jaakkola and Nathan Srebro}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {K-ary Clustering with Optimal Leaf Ordering for Gene Expression Data}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {506--520}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_39}, doi = {10.1007/3-540-45784-4\_39}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Bar-JosephDGHJS02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BergeronCR02, author = {Anne Bergeron and Sylvie Corteel and Mathieu Raffinot}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {The Algorithmic of Gene Teams}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {464--476}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_36}, doi = {10.1007/3-540-45784-4\_36}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/BergeronCR02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BermanBDGKS02, author = {Piotr Berman and Paul Bertone and Bhaskar DasGupta and Mark Gerstein and Ming{-}Yang Kao and Michael Snyder}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Fast Optimal Genome Tiling with Applications to Microarray Design and Homology Search}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {419--433}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_32}, doi = {10.1007/3-540-45784-4\_32}, timestamp = {Mon, 15 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BermanBDGKS02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BiluL02, author = {Yonatan Bilu and Michal Linial}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Functional Consequences in Metabolic Pathways from Phylogenetic Profiles}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {263--276}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_20}, doi = {10.1007/3-540-45784-4\_20}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BiluL02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BryantM02, author = {David Bryant and Vincent Moulton}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {NeighborNet: An Agglomerative Method for the Construction of Planar Phylogenetic Networks}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {375--391}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_28}, doi = {10.1007/3-540-45784-4\_28}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BryantM02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ChenJLWXX02, author = {Zhi{-}Zhong Chen and Tao Jiang and Guo{-}Hui Lin and Jianjun Wen and Dong Xu and Ying Xu}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Improved Approximation Algorithms for {NMR} Spectral Peak Assignment}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {82--96}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_7}, doi = {10.1007/3-540-45784-4\_7}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ChenJLWXX02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/CsurosM02, author = {Mikl{\'{o}}s Cs{\"{u}}r{\"{o}}s and Aleksandar Milosavljevic}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Pooled Genomic Indexing {(PGI):} Mathematical Analysis and Experiment Design}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {10--28}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_2}, doi = {10.1007/3-540-45784-4\_2}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/CsurosM02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DesperG02, author = {Richard Desper and Olivier Gascuel}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Fast and Accurate Phylogeny Reconstruction Algorithms Based on the Minimum-Evolution Principle}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {357--374}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_27}, doi = {10.1007/3-540-45784-4\_27}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DesperG02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DuhovnyNW02, author = {Dina Duhovny and Ruth Nussinov and Haim J. Wolfson}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Efficient Unbound Docking of Rigid Molecules}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {185--200}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_14}, doi = {10.1007/3-540-45784-4\_14}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DuhovnyNW02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/EdwardsL02, author = {Nathan Edwards and Ross Lippert}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Generating Peptide Candidates from Amino-Acid Sequence Databases for Protein Identification via Mass Spectrometry}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {68--81}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_6}, doi = {10.1007/3-540-45784-4\_6}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/EdwardsL02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Eriksen02, author = {Niklas Eriksen}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Approximating the Expected Number of Inversions Given the Number of Breakpoints}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {316--330}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_24}, doi = {10.1007/3-540-45784-4\_24}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Eriksen02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GoldwasserKL02, author = {Michael H. Goldwasser and Ming{-}Yang Kao and Hsueh{-}I Lu}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Fast Algorithms for Finding Maximum-Density Segments of a Sequence with Applications to Bioinformatics}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {157--171}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_12}, doi = {10.1007/3-540-45784-4\_12}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/GoldwasserKL02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GrateBJM02, author = {L. R. Grate and Chiranjib Bhattacharyya and Michael I. Jordan and I. Saira Mian}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Simultaneous Relevant Feature Identification and Classification in High-Dimensional Spaces}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {1--9}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_1}, doi = {10.1007/3-540-45784-4\_1}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/GrateBJM02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HalpernHR02, author = {Aaron L. Halpern and Daniel H. Huson and Knut Reinert}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Segment Match Refinement and Applications}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {126--139}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_10}, doi = {10.1007/3-540-45784-4\_10}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HalpernHR02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/KahngMPRZ02, author = {Andrew B. Kahng and Ion I. Mandoiu and Pavel A. Pevzner and Sherief Reda and Alexander Zelikovsky}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Border Length Minimization in {DNA} Array Design}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {435--448}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_34}, doi = {10.1007/3-540-45784-4\_34}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/KahngMPRZ02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LeongPSW02, author = {Hon Wai Leong and Franco P. Preparata and Wing{-}Kin Sung and Hugo Willy}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {On the Control of Hybridization Noise in {DNA} Sequencing-by-Hybridization}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {392--403}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_29}, doi = {10.1007/3-540-45784-4\_29}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/LeongPSW02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/LipsonWY02, author = {Doron Lipson and Peter Webb and Zohar Yakhini}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Designing Specific Oligonucleotide Probes for the Entire S. cerevisiae Transcriptome}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {491--505}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_38}, doi = {10.1007/3-540-45784-4\_38}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/LipsonWY02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MilikSO02, author = {Mariusz Milik and S{\'{a}}ndor Szalma and Krzysztof A. Olszewski}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {{FAUST:} An Algorithm for Extracting Functionally Relevant Templates from Protein Structures}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {172--184}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_13}, doi = {10.1007/3-540-45784-4\_13}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MilikSO02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MoretRW02, author = {Bernard M. E. Moret and Usman Roshan and Tandy J. Warnow}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Sequence-Length Requirements for Phylogenetic Methods}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {343--356}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_26}, doi = {10.1007/3-540-45784-4\_26}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MoretRW02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MoretSTL02, author = {Bernard M. E. Moret and Adam C. Siepel and Jijun Tang and Tao Liu}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Inversion Medians Outperform Breakpoint Medians in Phylogeny Reconstruction from Gene-Order Data}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {521--536}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_40}, doi = {10.1007/3-540-45784-4\_40}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/MoretSTL02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MyersD02, author = {Gene Myers and Richard Durbin}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Invited Lecture - Accelerating Smith-Waterman Searches}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {331--342}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_25}, doi = {10.1007/3-540-45784-4\_25}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MyersD02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/NakhlehRVW02, author = {Luay Nakhleh and Usman Roshan and Lisa Vawter and Tandy J. Warnow}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Estimating the Deviation from a Molecular Clock}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {287--299}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_22}, doi = {10.1007/3-540-45784-4\_22}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/NakhlehRVW02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Page02, author = {Roderic D. M. Page}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Modified Mincut Supertrees}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {537--552}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_41}, doi = {10.1007/3-540-45784-4\_41}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/Page02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/PedersenS02, author = {Christian N. S. Pedersen and Tejs Scharling}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Comparative Methods for Gene Structure Prediction in Homologous Sequences}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {220--234}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_17}, doi = {10.1007/3-540-45784-4\_17}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/PedersenS02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/PerteaS02, author = {Mihaela Pertea and Steven Salzberg}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {A Method to Improve the Performance of Translation Start Site Detection and Its Application for Gene Finding}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {210--219}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_16}, doi = {10.1007/3-540-45784-4\_16}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/PerteaS02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Rahmann02, author = {Sven Rahmann}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Rapid Large-Scale Oligonucleotide Selection for Microarrays}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {434}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_33}, doi = {10.1007/3-540-45784-4\_33}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Rahmann02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ReczkoFSH02, author = {Martin Reczko and Petko Fiziev and Eike Staub and Artemis G. Hatzigeorgiou}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Finding Signal Peptides in Human Protein Sequences Using Recurrent Neural Networks}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {60--67}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_5}, doi = {10.1007/3-540-45784-4\_5}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ReczkoFSH02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/RizziBIL02, author = {Romeo Rizzi and Vineet Bafna and Sorin Istrail and Giuseppe Lancia}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Practical Algorithms and Fixed-Parameter Tractability for the Single Individual {SNP} Haplotyping Problem}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {29--43}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_3}, doi = {10.1007/3-540-45784-4\_3}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/RizziBIL02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Rocke02, author = {Emily Rocke}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {A Hybrid Scoring Function for Protein Multiple Alignment}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {251--262}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_19}, doi = {10.1007/3-540-45784-4\_19}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Rocke02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SchwartzCI02, author = {Russell Schwartz and Andrew G. Clark and Sorin Istrail}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Methods for Inferring Block-Wise Ancestral History from Haploid Sequences}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {44--59}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_4}, doi = {10.1007/3-540-45784-4\_4}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SchwartzCI02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Shapiro02, author = {Ehud Shapiro}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Invited Lecture - Molecule as Computation: Towards an Abstraction of Biomolecular Systems}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {418}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_31}, doi = {10.1007/3-540-45784-4\_31}, timestamp = {Thu, 04 Oct 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Shapiro02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ShatskyNW02, author = {Maxim Shatsky and Ruth Nussinov and Haim J. Wolfson}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {MultiProt - {A} Multiple Protein Structural Alignment Algorithm}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {235--250}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_18}, doi = {10.1007/3-540-45784-4\_18}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ShatskyNW02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SkienaS02, author = {Steven Skiena and Sagi Snir}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Restricting {SBH} Ambiguity via Restriction Enzymes}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {404--417}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_30}, doi = {10.1007/3-540-45784-4\_30}, timestamp = {Sun, 06 Oct 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SkienaS02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Ukkonen02, author = {Esko Ukkonen}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Finding Founder Sequences from a Set of Recombinants}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {277--286}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_21}, doi = {10.1007/3-540-45784-4\_21}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Ukkonen02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Wang02, author = {Li{-}San Wang}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Genome Rearrangement Phylogeny Using Weighbor}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {112--125}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_9}, doi = {10.1007/3-540-45784-4\_9}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Wang02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/WarrenL02, author = {Liling L. Warren and Ben Hui Liu}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Combinatorial Use of Short Probes for Differential Gene Expression Profiling}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {477--490}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_37}, doi = {10.1007/3-540-45784-4\_37}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/WarrenL02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Wheeler02, author = {Raymond Wheeler}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {A Method of Consolidating and Combining {EST} and mRNA Alignments to a Genome to Enumerate Supported Splice Variants}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {201--209}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_15}, doi = {10.1007/3-540-45784-4\_15}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Wheeler02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ZhangMW02, author = {Louxin Zhang and Bin Ma and Lusheng Wang}, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Efficient Methods for Inferring Tandem Duplication History}, booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, pages = {97--111}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4\_8}, doi = {10.1007/3-540-45784-4\_8}, timestamp = {Tue, 14 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/ZhangMW02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/wabi/2002, editor = {Roderic Guig{\'{o}} and Dan Gusfield}, title = {Algorithms in Bioinformatics, Second International Workshop, {WABI} 2002, Rome, Italy, September 17-21, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2452}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45784-4}, doi = {10.1007/3-540-45784-4}, isbn = {3-540-44211-1}, timestamp = {Tue, 14 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/2002.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/AnantharamanM01, author = {Thomas S. Anantharaman and Bud Mishra}, editor = {Olivier Gascuel and Bernard M. E. Moret}, title = {False Positives in Genomic Map Assembly and Sequence Validation}, booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI} 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2149}, pages = {27--40}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-44696-6\_3}, doi = {10.1007/3-540-44696-6\_3}, timestamp = {Tue, 14 May 2019 10:00:40 +0200}, biburl = {https://dblp.org/rec/conf/wabi/AnantharamanM01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BarashBF01, author = {Yoseph Barash and Gill Bejerano and Nir Friedman}, editor = {Olivier Gascuel and Bernard M. E. Moret}, title = {A Simple Hyper-Geometric Approach for Discovering Putative Transcription Factor Binding Sites}, booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI} 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2149}, pages = {278--293}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-44696-6\_22}, doi = {10.1007/3-540-44696-6\_22}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/BarashBF01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BergeronS01, author = {Anne Bergeron and Fran{\c{c}}ois Strasbourg}, editor = {Olivier Gascuel and Bernard M. E. Moret}, title = {Experiments in Computing Sequences of Reversals}, booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI} 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2149}, pages = {164--174}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-44696-6\_13}, doi = {10.1007/3-540-44696-6\_13}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BergeronS01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Caprara01, author = {Alberto Caprara}, editor = {Olivier Gascuel and Bernard M. E. Moret}, title = {On the Practical Solution of the Reversal Median Problem}, booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI} 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2149}, pages = {238--251}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-44696-6\_19}, doi = {10.1007/3-540-44696-6\_19}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Caprara01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/CaseyMW01, author = {Will Casey and Bud Mishra and Michael Wigler}, editor = {Olivier Gascuel and Bernard M. E. Moret}, title = {Placing Probes along the Genome Using Pairwise Distance Data}, booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI} 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2149}, pages = {52--68}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-44696-6\_5}, doi = {10.1007/3-540-44696-6\_5}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/CaseyMW01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ChorHP01, author = {Benny Chor and Michael D. Hendy and David Penny}, editor = {Olivier Gascuel and Bernard M. E. Moret}, title = {Analytic Solutions for Three-Taxon ML\({}_{\mbox{MC}}\) Trees with Variable Rates Across Sites}, booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI} 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2149}, pages = {204--213}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-44696-6\_16}, doi = {10.1007/3-540-44696-6\_16}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ChorHP01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/DeniseRV01, author = {Alain Denise and Mireille R{\'{e}}gnier and Mathias Vandenbogaert}, editor = {Olivier Gascuel and Bernard M. E. Moret}, title = {Assessing the Statistical Significance of Overrepresented Oligonucleotides}, booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI} 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2149}, pages = {85--97}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-44696-6\_7}, doi = {10.1007/3-540-44696-6\_7}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/DeniseRV01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/EdelsbrunnerZ01, author = {Herbert Edelsbrunner and Afra Zomorodian}, editor = {Olivier Gascuel and Bernard M. E. Moret}, title = {Computing Linking Numbers of a Filtration}, booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI} 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2149}, pages = {112--127}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-44696-6\_9}, doi = {10.1007/3-540-44696-6\_9}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/EdelsbrunnerZ01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Eriksen01, author = {Niklas Eriksen}, editor = {Olivier Gascuel and Bernard M. E. Moret}, title = {(1+epsilon)-Approximation of Sorting by Reversals and Transpositions}, booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI} 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2149}, pages = {227--237}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-44696-6\_18}, doi = {10.1007/3-540-44696-6\_18}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Eriksen01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ErikssonZE01, author = {Olivia Eriksson and Yishao Zhou and Arne Elofsson}, editor = {Olivier Gascuel and Bernard M. E. Moret}, title = {Side Chain-Positioning as an Integer Programming Problem}, booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI} 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2149}, pages = {128--141}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-44696-6\_10}, doi = {10.1007/3-540-44696-6\_10}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ErikssonZE01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/GanapathysaravanabavanW01, author = {Ganeshkumar Ganapathysaravanabavan and Tandy J. Warnow}, editor = {Olivier Gascuel and Bernard M. E. Moret}, title = {Finding a Maximum Compatible Tree for a Bounded Number of Trees with Bounded Degree Is Solvable in Polynomial Time}, booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI} 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2149}, pages = {156--163}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-44696-6\_12}, doi = {10.1007/3-540-44696-6\_12}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/GanapathysaravanabavanW01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HeberS01, author = {Steffen Heber and Jens Stoye}, editor = {Olivier Gascuel and Bernard M. E. Moret}, title = {Algorithms for Finding Gene Clusters}, booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI} 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2149}, pages = {252--263}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-44696-6\_20}, doi = {10.1007/3-540-44696-6\_20}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/HeberS01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HusonHLMRS01, author = {Daniel H. Huson and Aaron L. Halpern and Zhongwu Lai and Eugene W. Myers and Knut Reinert and Granger G. Sutton}, editor = {Olivier Gascuel and Bernard M. E. Moret}, title = {Comparing Assemblies Using Fragments and Mate-Pairs}, booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI} 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2149}, pages = {294--306}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-44696-6\_23}, doi = {10.1007/3-540-44696-6\_23}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HusonHLMRS01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/JagotaLP01, author = {Arun K. Jagota and Rune B. Lyngs{\o} and Christian N. S. Pedersen}, editor = {Olivier Gascuel and Bernard M. E. Moret}, title = {Comparing a Hidden Markov Model and a Stochastic Context-Free Grammar}, booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI} 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2149}, pages = {69--94}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-44696-6\_6}, doi = {10.1007/3-540-44696-6\_6}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/JagotaLP01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MiklosT01, author = {Istv{\'{a}}n Mikl{\'{o}}s and Zolt{\'{a}}n Toroczkai}, editor = {Olivier Gascuel and Bernard M. E. Moret}, title = {An Improved Model for Statistical Alignment}, booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI} 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2149}, pages = {1--10}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-44696-6\_1}, doi = {10.1007/3-540-44696-6\_1}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MiklosT01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/NakhlehRJSW01, author = {Luay Nakhleh and Usman Roshan and Katherine St. John and Jerry Sun and Tandy J. Warnow}, editor = {Olivier Gascuel and Bernard M. E. Moret}, title = {The Performance of Phylogenetic Methods on Trees of Bounded Diameter}, booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI} 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2149}, pages = {214--226}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-44696-6\_17}, doi = {10.1007/3-540-44696-6\_17}, timestamp = {Mon, 26 Feb 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/NakhlehRJSW01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/OhsenZ01, author = {Niklas von {\"{O}}hsen and Ralf Zimmer}, editor = {Olivier Gascuel and Bernard M. E. Moret}, title = {Improving Profile-Profile Alignments via Log Average Scoring}, booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI} 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2149}, pages = {11--26}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-44696-6\_2}, doi = {10.1007/3-540-44696-6\_2}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/OhsenZ01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/PupkoSHSG01, author = {Tal Pupko and Roded Sharan and Masami Hasegawa and Ron Shamir and Dan Graur}, editor = {Olivier Gascuel and Bernard M. E. Moret}, title = {A Chemical-Distance-Based Test for Positive Darwinian Selection}, booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI} 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2149}, pages = {142--155}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-44696-6\_11}, doi = {10.1007/3-540-44696-6\_11}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/PupkoSHSG01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SchiexCBM01, author = {Thomas Schiex and Patrick Chabrier and Martin Bouchez and Denis Milan}, editor = {Olivier Gascuel and Bernard M. E. Moret}, title = {Boosting {EM} for Radiation Hybrid and Genetic Mapping}, booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI} 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2149}, pages = {41--51}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-44696-6\_4}, doi = {10.1007/3-540-44696-6\_4}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SchiexCBM01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SiepelM01, author = {Adam C. Siepel and Bernard M. E. Moret}, editor = {Olivier Gascuel and Bernard M. E. Moret}, title = {Finding an Optimal Inversion Median: Experimental Results}, booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI} 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2149}, pages = {189--203}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-44696-6\_15}, doi = {10.1007/3-540-44696-6\_15}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/SiepelM01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/VeenWSMRH01, author = {Peter J. van der Veen and Lodewyk F. A. Wessels and J. W. Slootstra and R. H. Meloen and Marcel J. T. Reinders and Johannes Hellendoorn}, editor = {Olivier Gascuel and Bernard M. E. Moret}, title = {Determination of Binding Amino Acids Based on Random Peptide Array Screening Data}, booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI} 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2149}, pages = {264--277}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-44696-6\_21}, doi = {10.1007/3-540-44696-6\_21}, timestamp = {Thu, 26 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wabi/VeenWSMRH01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ViksnaG01, author = {Juris Viksna and David R. Gilbert}, editor = {Olivier Gascuel and Bernard M. E. Moret}, title = {Pattern Matching and Pattern Discovery Algorithms for Protein Topologies}, booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI} 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2149}, pages = {98--111}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-44696-6\_8}, doi = {10.1007/3-540-44696-6\_8}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ViksnaG01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/Wang01, author = {Li{-}San Wang}, editor = {Olivier Gascuel and Bernard M. E. Moret}, title = {Exact-IEBP: {A} New Technique for Estimating Evolutionary Distances between Whole Genomes}, booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI} 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2149}, pages = {175--188}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-44696-6\_14}, doi = {10.1007/3-540-44696-6\_14}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/Wang01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/wabi/2001, editor = {Olivier Gascuel and Bernard M. E. Moret}, title = {Algorithms in Bioinformatics, First International Workshop, {WABI} 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2149}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-44696-6}, doi = {10.1007/3-540-44696-6}, isbn = {3-540-42516-0}, timestamp = {Tue, 14 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/2001.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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