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Publication search results
found 97 matches
- 2024
- Chih Hao Wu, Suraj Joshi, Welles Robinson, Paul F. Robbins, Russell Schwartz, Süleyman Cenk Sahinalp, Salem Malikic:
Determining Optimal Placement of Copy Number Aberration Impacted Single Nucleotide Variants in a Tumor Progression History. RECOMB 2024: 438-443 - Matt Schwartz
, Nathan H. Bean
, Joshua Levi Weese
, Russell Feldhausen
:
Bringing a Visual Memory Model to VS Code. SIGCSE (2) 2024: 1927 - 2023
- Arjun Srivatsa
, Haoyun Lei, Russell Schwartz:
A Clonal Evolution Simulator for Planning Somatic Evolution Studies. J. Comput. Biol. 30(8): 831-847 (2023) - Patricia M. Palagi
, Russell Schwartz
, Scott Markel
, B. F. Francis Ouellette
:
Ten simple rules for writing a PLOS Computational Biology quick tips article. PLoS Comput. Biol. 19(12) (2023) - 2022
- Arjun Srivatsa, Haoyun Lei, Russell Schwartz:
A Clonal Evolution Simulator for Planning Somatic Evolution Studies. ISBRA 2022: 229-242 - 2021
- Haoyun Lei, E. Michael Gertz, Alejandro A. Schäffer, Xuecong Fu, Yifeng Tao, Kerstin Heselmeyer-Haddad, Irianna Torres, Guibo Li, Liqin Xu, Yong Hou, Kui Wu
, Xulian Shi, Michael Dean, Thomas Ried, Russell Schwartz
:
Tumor heterogeneity assessed by sequencing and fluorescence in situ hybridization (FISH) data. Bioinform. 37(24): 4704-4711 (2021) - Xuecong Fu, Haoyun Lei, Yifeng Tao
, Kerstin Heselmeyer-Haddad, Irianna Torres, Michael Dean, Thomas Ried, Russell Schwartz
:
Joint Clustering of Single-Cell Sequencing and Fluorescence In Situ Hybridization Data for Reconstructing Clonal Heterogeneity in Cancers. J. Comput. Biol. 28(11): 1035-1051 (2021) - Russell Schwartz:
RECOMB 2020 Special Issue. J. Comput. Biol. 28(4): 345 (2021) - Yifeng Tao
, Ashok Rajaraman
, Xiaoyue Cui
, Ziyi Cui
, Haoran Chen
, Yuanqi Zhao
, Jesse Eaton
, Hannah Kim
, Jian Ma
, Russell Schwartz
:
Assessing the contribution of tumor mutational phenotypes to cancer progression risk. PLoS Comput. Biol. 17(3) (2021) - Xuecong Fu, Russell Schwartz:
ConTreeDP: A consensus method of tumor trees based on maximum directed partition support problem. BIBM 2021: 125-130 - Zibo Hu, Shurui Li, Russell L. T. Schwartz, Maria Solyanik-Gorgone, Mario Miscuglio, Puneet Gupta, Volker J. Sorger:
Batch Processing and Data Streaming Fourier-based Convolutional Neural Network Accelerator. CoRR abs/2112.12297 (2021) - 2020
- Ilja M. Nolte, Russell Schwartz:
Metasubtract: an R-package to analytically produce leave-one-out meta-analysis GWAS summary statistics. Bioinform. 36(16): 4521-4522 (2020) - Florian Privé, Keurcien Luu, Michael G. B. Blum, John J. McGrath
, Bjarni J. Vilhjálmsson
, Russell Schwartz:
Efficient toolkit implementing best practices for principal component analysis of population genetic data. Bioinform. 36(16): 4449-4457 (2020) - Yifeng Tao
, Haoyun Lei
, Xuecong Fu, Adrian V. Lee, Jian Ma
, Russell Schwartz:
Robust and accurate deconvolution of tumor populations uncovers evolutionary mechanisms of breast cancer metastasis. Bioinform. 36(Supplement-1): i407-i416 (2020) - Zhenqin Wu
, Nilah M. Ioannidis, James Zou, Russell Schwartz:
Predicting target genes of non-coding regulatory variants with IRT. Bioinform. 36(16): 4440-4448 (2020) - Ying Zhou
, Sharon R. Browning, Brian L. Browning, Russell Schwartz:
IBDkin: fast estimation of kinship coefficients from identity by descent segments. Bioinform. 36(16): 4519-4520 (2020) - Haoyun Lei
, Bochuan Lyu, E. Michael Gertz, Alejandro A. Schäffer, Xulian Shi, Kui Wu
, Guibo Li, Liqin Xu, Yong Hou, Michael Dean, Russell Schwartz:
Tumor Copy Number Deconvolution Integrating Bulk and Single-Cell Sequencing Data. J. Comput. Biol. 27(4): 565-598 (2020) - Yifeng Tao
, Shuangxia Ren, Michael Q. Ding, Russell Schwartz, Xinghua Lu:
Predicting Drug Sensitivity of Cancer Cell Lines via Collaborative Filtering with Contextual Attention. MLHC 2020: 660-684 - Russell Schwartz:
Research in Computational Molecular Biology - 24th Annual International Conference, RECOMB 2020, Padua, Italy, May 10-13, 2020, Proceedings. Lecture Notes in Computer Science 12074, Springer 2020, ISBN 978-3-030-45256-8 [contents] - Russell Schwartz, Pratap Tokekar:
Robust Multi-Agent Task Assignment in Failure-Prone and Adversarial Environments. CoRR abs/2007.00100 (2020) - 2019
- Yifeng Tao, Haoyun Lei, Adrian V. Lee, Jian Ma, Russell Schwartz:
Phylogenies Derived from Matched Transcriptome Reveal the Evolution of Cell Populations and Temporal Order of Perturbed Pathways in Breast Cancer Brain Metastases. ISMCO 2019: 3-28 - Haoyun Lei, Bochuan Lyu, E. Michael Gertz, Alejandro A. Schäffer, Xulian Shi, Kui Wu, Guibo Li, Liqin Xu
, Yong Hou, Michael Dean, Russell Schwartz:
Tumor Copy Number Deconvolution Integrating Bulk and Single-Cell Sequencing Data. RECOMB 2019: 174-189 - 2018
- Jesse Eaton, Jingyi Wang, Russell Schwartz:
Deconvolution and phylogeny inference of structural variations in tumor genomic samples. Bioinform. 34(13): i357-i365 (2018) - Marcus Thomas, Russell Schwartz
:
A method for efficient Bayesian optimization of self-assembly systems from scattering data. BMC Syst. Biol. 12(1): 65:1-65:17 (2018) - Nicola J. Mulder
, Russell Schwartz
, Michelle D. Brazas
, Cath Brooksbank
, Bruno A. Gaëta, Sarah L. Morgan
, Mark A. Pauley
, Anne G. Rosenwald, Gabriella Rustici
, Michael L. Sierk
, Tandy J. Warnow, Lonnie R. Welch:
The development and application of bioinformatics core competencies to improve bioinformatics training and education. PLoS Comput. Biol. 14(2) (2018) - Gaël Varoquaux, Yannick Schwartz, Russell A. Poldrack
, Baptiste Gauthier
, Danilo Bzdok
, Jean-Baptiste Poline
, Bertrand Thirion
:
Atlases of cognition with large-scale human brain mapping. PLoS Comput. Biol. 14(11) (2018) - Russell Schwartz:
Reconstructing Tumor Evolution and Progression in Structurally Variant Cancer Cells. COCOON 2018: x- - Haoyun Lei, Bochuan Lyu, E. Michael Gertz, Alejandro A. Schäffer, Russell Schwartz:
Tumor Copy Number Data Deconvolution Integrating Bulk and Single-cell Sequencing Data. ICCABS 2018: 1 - 2017
- Theodore Roman, Lu Xie, Russell Schwartz
:
Automated deconvolution of structured mixtures from heterogeneous tumor genomic data. PLoS Comput. Biol. 13(10) (2017) - Lu Xie, Gregory R. Smith
, Russell Schwartz
:
Derivative-Free Optimization of Rate Parameters of Capsid Assembly Models from Bulk in Vitro Data. IEEE ACM Trans. Comput. Biol. Bioinform. 14(4): 844-855 (2017)
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