
Salem Malikic
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2020 – today
- 2020
- [j8]Erfan Sadeqi Azer, Farid Rashidi Mehrabadi
, Salem Malikic, Xuan Cindy Li, Osnat Bartok, Kevin Litchfield
, Ronen Levy, Yardena Samuels, Alejandro A. Schäffer, E. Michael Gertz, Chi-Ping Day, Eva Pérez-Guijarro, Kerrie Marie, Maxwell P. Lee, Glenn Merlino, Funda Ergün, Süleyman Cenk Sahinalp:
PhISCS-BnB: a fast branch and bound algorithm for the perfect tumor phylogeny reconstruction problem. Bioinform. 36(Supplement-1): i169-i176 (2020) - [j7]Ermin Hodzic, Raunak Shrestha, Salem Malikic, Colin C. Collins, Kevin Litchfield, Samra Turajlic, Süleyman Cenk Sahinalp:
Identification of conserved evolutionary trajectories in tumors. Bioinform. 36(Supplement-1): i427-i435 (2020) - [j6]Moritz Gerstung
, Clemency Jolly, Ignaty Leshchiner, Stefan C. Dentro, Santiago Gonzalez, Thomas J. Mitchell
, Yulia Rubanova, Pavana Anur, Kaixian Yu, Maxime Tarabichi
, Amit G. Deshwar, Jeff Wintersinger, Kortine Kleinheinz, Ignacio Vázquez-García, Kerstin Haase, Lara Jerman, Subhajit Sengupta, Geoff MacIntyre, Salem Malikic, Nilgun Donmez, Dimitri G. Livitz, Marek Cmero, Jonas Demeulemeester, Steven E. Schumacher, Yu Fan, Xiaotong Yao
, Juhee Lee, Matthias Schlesner, Paul C. Boutros, David D. L. Bowtell, Hongtu Zhu, Gad Getz, Marcin Imielinski, Rameen Beroukhim, Süleyman Cenk Sahinalp, Yuan Ji, Martin Peifer, Florian Markowetz, Ville Mustonen
, Ke Yuan, Wenyi Wang
, Quaid D. Morris
, David J. Adams, Peter J. Campbell, Shaolong Cao, Elizabeth L. Christie
, Yupeng Cun, Kevin J. Dawson, Ruben M. Drews, Roland Eils
, Matthew Fittall
, Dale W. Garsed, Gavin Ha, Henry Lee-Six, Iñigo Martincorena, Layla Oesper, Myron Peto, Benjamin J. Raphael, Daniel T. Rosebrock, Adriana Salcedo, Ruian Shi, Seung Jun Shin, Oliver Spiro, Lincoln D. Stein, Shankar Vembu, David A. Wheeler, Tsun-Po Yang, Paul T. Spellman, David C. Wedge
, Peter Van Loo:
The evolutionary history of 2,658 cancers. Nat. 578(7793): 122-128 (2020)
2010 – 2019
- 2019
- [j5]Nikolai Karpov
, Salem Malikic, Md. Khaledur Rahman, Süleyman Cenk Sahinalp:
A multi-labeled tree dissimilarity measure for comparing "clonal trees" of tumor progression. Algorithms Mol. Biol. 14(1): 17:1-17:18 (2019) - [j4]Sahand Khakabimamaghani, Salem Malikic, Jeffrey Tang, Dujian Ding, Ryan D. Morin
, Leonid Chindelevitch
, Martin Ester:
Collaborative intra-tumor heterogeneity detection. Bioinform. 35(14): i379-i388 (2019) - 2018
- [c3]Salem Malikic, Katharina Jahn, Jack Kuipers, Süleyman Cenk Sahinalp, Niko Beerenwinkel:
Integrative Inference of Subclonal Tumour Evolution from Single-Cell and Bulk Sequencing Data. RECOMB 2018: 269-270 - [c2]Nikolai Karpov, Salem Malikic, Md. Khaledur Rahman
, Süleyman Cenk Sahinalp:
A Multi-labeled Tree Edit Distance for Comparing "Clonal Trees" of Tumor Progression. WABI 2018: 22:1-22:19 - 2017
- [j3]Nilgun Donmez, Salem Malikic
, Alexander W. Wyatt, Martin E. Gleave
, Colin C. Collins, Süleyman Cenk Sahinalp:
Clonality Inference from Single Tumor Samples Using Low-Coverage Sequence Data. J. Comput. Biol. 24(6): 515-523 (2017) - 2016
- [c1]Nilgun Donmez, Salem Malikic, Alexander W. Wyatt, Martin E. Gleave
, Colin C. Collins, Süleyman Cenk Sahinalp:
Clonality Inference from Single Tumor Samples Using Low Coverage Sequence Data. RECOMB 2016: 83-94 - 2015
- [j2]Salem Malikic
, Andrew W. McPherson, Nilgun Donmez, Cenk S. Sahinalp:
Clonality inference in multiple tumor samples using phylogeny. Bioinform. 31(9): 1349-1356 (2015) - [j1]Ibrahim Numanagic, Salem Malikic
, Victoria M. Pratt, Todd C. Skaar, David A. Flockhart, Süleyman Cenk Sahinalp:
Cypiripi: exact genotyping of CYP2D6 using high-throughput sequencing data. Bioinform. 31(12): 27-34 (2015)
Coauthor Index

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