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- Peter Händel
aka: Peter Handel
Royal Institute of Technology, Stockholm, Sweden
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Publication search results
found 269 matches
- 2024
- J. Harry Caufield
, Harshad Hegde
, Vincent Emonet
, Nomi L. Harris
, Marcin P. Joachimiak
, Nicolas Matentzoglu
, Hyeongsik Kim
, Sierra A. T. Moxon
, Justin T. Reese
, Melissa A. Haendel
, Peter N. Robinson
, Christopher J. Mungall
:
Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning. Bioinform. 40(3) (2024) - Tudor Groza, J. Harry Caufield, Dylan Gration, Gareth Baynam, Melissa A. Haendel, Peter N. Robinson, Christopher J. Mungall, Justin T. Reese:
An evaluation of GPT models for phenotype concept recognition. BMC Medical Informatics Decis. Mak. 24(1): 30 (2024) - 2023
- Lauren E. Chan, Anne E. Thessen, William D. Duncan, Nicolas Matentzoglu
, Charles Schmitt, Cynthia J. Grondin, Nicole A. Vasilevsky, Julie A. McMurry, Peter N. Robinson, Christopher J. Mungall, Melissa A. Haendel:
The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond. J. Biomed. Semant. 14(1): 3 (2023) - Peter Leese
, Adit Anand
, Andrew T. Girvin
, Amin Manna
, Saaya Patel
, Yun Jae Yoo
, Rachel Wong
, Melissa A. Haendel
, Christopher G. Chute
, Tellen D. Bennett
, Janos G. Hajagos
, Emily R. Pfaff
, Richard A. Moffitt
:
Clinical encounter heterogeneity and methods for resolving in networked EHR data: a study from N3C and RECOVER programs. J. Am. Medical Informatics Assoc. 30(6): 1125-1136 (2023) - Sijia Liu
, Andrew Wen
, Liwei Wang
, Huan He
, Sunyang Fu
, Robert T. Miller, Andrew E. Williams
, Daniel R. Harris
, Ramakanth Kavuluru
, Mei Liu
, Noor Abu-El-Rub, Dalton Schutte, Rui Zhang
, Masoud Rouhizadeh
, John D. Osborne
, Yongqun He
, Umit Topaloglu
, Stephanie S. Hong, Joel H. Saltz
, Thomas Schaffter
, Emily R. Pfaff
, Christopher G. Chute
, Tim Duong, Melissa A. Haendel
, Rafael Fuentes, Peter Szolovits
, Hua Xu
, Hongfang Liu
:
An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C). J. Am. Medical Informatics Assoc. 30(12): 2036-2040 (2023) - Tiffany J. Callahan
, Adrianne L. Stefanski, Jordan M. Wyrwa
, Chenjie Zeng, Anna Ostropolets, Juan M. Banda, William A. Baumgartner Jr., Richard D. Boyce, Elena Casiraghi
, Ben D. Coleman, Janine H. Collins
, Sara J. Deakyne Davies
, James A. Feinstein
, Asiyah Y. Lin, Blake Martin
, Nicolas A. Matentzoglu
, Daniella Meeker, Justin T. Reese, Jessica Sinclair, Sanya Bathla Taneja
, Katy E. Trinkley, Nicole A. Vasilevsky, Andrew E. Williams
, Xingmin Aaron Zhang, Joshua C. Denny, Patrick B. Ryan, George Hripcsak, Tellen D. Bennett, Melissa A. Haendel, Peter N. Robinson
, Lawrence E. Hunter, Michael G. Kahn
:
Ontologizing health systems data at scale: making translational discovery a reality. npj Digit. Medicine 6 (2023) - Joshua Niemeijer, Jan Ehrhardt, Timo Kepp, Jörg P. Schäfer, Heinz Handels:
Overcoming the sensor delta for semantic segmentation in OCT images. Medical Imaging: Computer-Aided Diagnosis 2023 - J. Harry Caufield, Tim E. Putman, Kevin Schaper, Deepak R. Unni, Harshad Hegde, Tiffany J. Callahan, Luca Cappelletti
, Sierra A. T. Moxon, Vida Ravanmehr, Seth Carbon, Lauren E. Chan, Katherina Cortes, Kent A. Shefchek, Glass Elsarboukh, James P. Balhoff, Tommaso Fontana, Nicolas Matentzoglu, Richard M. Bruskiewich, Anne E. Thessen, Nomi L. Harris, Monica C. Munoz-Torres, Melissa A. Haendel, Peter N. Robinson, Marcin P. Joachimiak, Christopher J. Mungall, Justin T. Reese:
KG-Hub - Building and Exchanging Biological Knowledge Graphs. CoRR abs/2302.10800 (2023) - J. Harry Caufield, Harshad Hegde, Vincent Emonet, Nomi L. Harris, Marcin P. Joachimiak, Nicolas Matentzoglu, HyeongSik Kim, Sierra A. T. Moxon, Justin T. Reese, Melissa A. Haendel, Peter N. Robinson, Christopher J. Mungall:
Structured prompt interrogation and recursive extraction of semantics (SPIRES): A method for populating knowledge bases using zero-shot learning. CoRR abs/2304.02711 (2023) - Tudor Groza, J. Harry Caufield, Dylan Gration, Gareth Baynam, Melissa A. Haendel, Peter N. Robinson, Chris Mungall, Justin T. Reese:
An evaluation of GPT models for phenotype concept recognition. CoRR abs/2309.17169 (2023) - 2022
- Nicolas Matentzoglu
, James P. Balhoff
, Susan M. Bello
, Chris Bizon
, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute
, William D. Duncan
, Chris T. A. Evelo
, Davera Gabriel, John Graybeal
, Alasdair J. G. Gray, Benjamin M. Gyori
, Melissa A. Haendel
, Henriette Harmse, Nomi L. Harris
, Ian Harrow, Harshad Hegde, Amelia L. Hoyt
, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler, Thomas Liener
, Qinqin Long
, James Malone, James A. McLaughlin
, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres
, David Osumi-Sutherland
, James A. Overton
, Bjoern Peters, Tim E. Putman
, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen
, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner
, Christopher J. Mungall
:
A Simple Standard for Sharing Ontological Mappings (SSSOM). Database J. Biol. Databases Curation 2022(2022) (2022) - Nicolas Matentzoglu
, Damien Goutte-Gattat
, Shawn Zheng Kai Tan
, James P. Balhoff
, Seth Carbon, Anita R. Caron
, William D. Duncan
, Joe E. Flack, Melissa A. Haendel
, Nomi L. Harris
, William R. Hogan
, Charles Tapley Hoyt
, Rebecca C. Jackson
, Hyeongsik Kim, Hüseyin Kir
, Martin Larralde
, Julie A. McMurry, James A. Overton
, Bjoern Peters
, Clare Pilgrim
, Raymund Stefancsik, Sofia M. C. Robb, Sabrina Toro
, Nicole A. Vasilevsky, Ramona L. Walls, Christopher J. Mungall
, David Osumi-Sutherland
:
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies. Database J. Biol. Databases Curation 2022(2022) (2022) - Jason A. Thomas, Randi E. Foraker
, Noa Zamstein, Jon D. Morrow
, Philip R. O. Payne
, Adam B. Wilcox, Melissa A. Haendel, Christopher G. Chute, Kenneth R. Gersing, Anita Walden, Tellen D. Bennett, David A. Eichmann, Justin Guinney
, Warren A. Kibbe, Hongfang Liu, Emily R. Pfaff, Peter N. Robinson, Joel H. Saltz, Heidi Spratt, Justin Starren, Christine Suver, Chunlei Wu, Davera Gabriel, Stephanie S. Hong, Kristin Kostka, Harold P. Lehmann, Richard A. Moffitt, Michele Morris, Matvey B. Palchuk, Xiaohan Tanner Zhang, Richard L. Zhu, Benjamin R. C. Amor, Mark M. Bissell, Marshall Clark, Andrew T. Girvin, Adam M. Lee, Robert T. Miller, Kellie M. Walters, Yooree Chae, Connor Cook, Alexandra Dest, Racquel R. Dietz, Thomas Dillon, Patricia A. Francis, Rafael Fuentes, Alexis Graves, Andrew J. Neumann, Shawn T. O'Neil, Usman Sheikh, Andréa M. Volz, Elizabeth Zampino, Christopher P. Austin, Samuel Bozzette, Mariam Deacy, Nicole Garbarini, Michael G. Kurilla, Sam G. Michael, Joni L. Rutter, Meredith Temple-O'Connor, Katie Rebecca Bradwell, Amin Manna, Nabeel Qureshi, Mary Morrison Saltz, Julie A. McMurry, Carolyn T. Bramante
, Jeremy Richard Harper, Wenndy Hernandez, Farrukh M. Koraishy, Federico Mariona, Saidulu Mattapally, Amit Saha, Satyanarayana Vedula, Yujuan Fu, Nisha Mathews, Ofer Mendelevitch:
Demonstrating an approach for evaluating synthetic geospatial and temporal epidemiologic data utility: results from analyzing >1.8 million SARS-CoV-2 tests in the United States National COVID Cohort Collaborative (N3C). J. Am. Medical Informatics Assoc. 29(8): 1350-1365 (2022) - Elena Casiraghi, Rachel Wong, Margaret Hall, Ben D. Coleman, Marco Notaro, Michael D. Evans, Jena S. Tronieri, Hannah Blau, Bryan Laraway, Tiffany J. Callahan, Lauren E. Chan, Carolyn T. Bramante, John B. Buse, Richard A. Moffitt, Til Sturmer, Steven G. Johnson, Yu Raymond Shao, Justin T. Reese, Peter N. Robinson, Alberto Paccanaro, Giorgio Valentini, Jared D. Huling, Kenneth Wilkins:
Tell Bennet, Christopher Chute, Peter DeWitt, Kenneth Gersing, Andrew Girvin, Melissa Haendel, Jeremy Harper, Janos Hajagos, Stephanie Hong, Emily Pfaff, Jane Reusch, Corneliu Antoniescu, Kimberly Robaski: A Methodological Framework for the Comparative Evaluation of Multiple Imputation Methods: Multiple Imputation of Race, Ethnicity and Body Mass Index in the U.S. National COVID Cohort Collaborative. CoRR abs/2206.06444 (2022) - Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron, William D. Duncan, Joe E. Flack, Melissa A. Haendel, Nomi L. Harris, William R. Hogan, Charles Tapley Hoyt, Rebecca C. Jackson, Hyeongsik Kim, Hüseyin Kir, Martin Larralde, Julie A. McMurry, James A. Overton, Bjoern Peters, Clare Pilgrim, Raymund Stefancsik, Sofia M. C. Robb, Sabrina Toro, Nicole A. Vasilevsky, Ramona L. Walls, Christopher J. Mungall, David Osumi-Sutherland:
Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies. CoRR abs/2207.02056 (2022) - Tiffany J. Callahan, Adrianne L. Stefanski, Jordan M. Wyrwa, Chenjie Zeng, Anna Ostropolets, Juan M. Banda, William A. Baumgartner Jr., Richard D. Boyce, Elena Casiraghi, Ben D. Coleman, Janine H. Collins, Sara J. Deakyne Davies, James A. Feinstein
, Melissa A. Haendel, Asiyah Y. Lin, Blake Martin, Nicolas Matentzoglu, Daniella Meeker, Justin T. Reese, Jessica Sinclair, Sanya Bathla Taneja, Katy E. Trinkley, Nicole A. Vasilevsky, Andrew E. Williams, Xingman A. Zhang, Peter N. Robinson, Patrick B. Ryan, George Hripcsak, Tellen D. Bennett, Lawrence E. Hunter, Michael G. Kahn:
Ontologizing Health Systems Data at Scale: Making Translational Discovery a Reality. CoRR abs/2209.04732 (2022) - 2021
- Rebecca C. Jackson
, Nicolas Matentzoglu
, James A. Overton
, Randi Vita
, James P. Balhoff
, Pier Luigi Buttigieg
, Seth Carbon
, Mélanie Courtot
, Alexander D. Diehl
, Damion M. Dooley
, William D. Duncan
, Nomi L. Harris
, Melissa A. Haendel
, Suzanna E. Lewis
, Darren A. Natale
, David Osumi-Sutherland
, Alan Ruttenberg
, Lynn M. Schriml
, Barry Smith
, Christian J. Stoeckert Jr.
, Nicole A. Vasilevsky
, Ramona L. Walls
, Jie Zheng
, Christopher J. Mungall
, Bjoern Peters
:
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies. Database J. Biol. Databases Curation 2021 (2021) - Melissa A. Haendel, Christopher G. Chute, Tellen D. Bennett, David A. Eichmann
, Justin Guinney, Warren A. Kibbe
, Philip R. O. Payne, Emily R. Pfaff
, Peter N. Robinson
, Joel H. Saltz, Heidi Spratt, Christine Suver, John Wilbanks, Adam B. Wilcox, Andrew E. Williams, Chunlei Wu, Clair Blacketer, Robert L. Bradford, James J. Cimino, Marshall Clark, Evan W. Colmenares, Patricia A. Francis, Davera Gabriel, Alexis Graves, Raju Hemadri, Stephanie S. Hong, George Hripcsak, Dazhi Jiao, Jeffrey G. Klann, Kristin Kostka, Adam M. Lee, Harold P. Lehmann, Lora Lingrey, Robert T. Miller, Michele Morris, Shawn N. Murphy, Karthik Natarajan, Matvey B. Palchuk, Usman Sheikh, Harold Solbrig, Shyam Visweswaran, Anita Walden, Kellie M. Walters, Griffin M. Weber, Xiaohan Tanner Zhang, Richard L. Zhu, Benjamin R. C. Amor, Andrew T. Girvin, Amin Manna, Nabeel Qureshi, Michael G. Kurilla, Sam G. Michael, Lili M. Portilla, Joni L. Rutter, Christopher P. Austin, Ken R. Gersing:
The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment. J. Am. Medical Informatics Assoc. 28(3): 427-443 (2021) - Sebastian Köhler, Michael A. Gargano, Nicolas Matentzoglu, Leigh Carmody
, David Lewis-Smith
, Nicole A. Vasilevsky
, Daniel Danis, Ganna Balagura
, Gareth Baynam, Amy M. Brower, Tiffany J. Callahan, Christopher G. Chute, Johanna L. Est, Peter D. Galer, Shiva Ganesan, Matthias Griese, Matthias Haimel, Julia Pazmandi, Marc Hanauer, Nomi L. Harris, Michael Hartnett, Maximilian Hastreiter, Fabian Hauck, Yongqun He, Tim Jeske
, Hugh Kearney
, Gerhard Kindle, Christoph Klein, Katrin Knoflach, Roland Krause
, David Lagorce, Julie A. McMurry, Jillian A. Miller, Monica C. Munoz-Torres, Rebecca L. Peters, Christina K. Rapp, Ana Rath, Shahmir A. Rind, Avi Z. Rosenberg
, Michael M. Segal, Markus G. Seidel
, Damian Smedley, Tomer Talmy
, Yarlalu Thomas, Samuel A. Wiafe, Julie Xian
, Zafer Yüksel
, Ingo Helbig, Christopher J. Mungall, Melissa A. Haendel
, Peter N. Robinson
:
The Human Phenotype Ontology in 2021. Nucleic Acids Res. 49(Database-Issue): D1207-D1217 (2021) - Justin T. Reese
, Deepak R. Unni
, Tiffany J. Callahan
, Luca Cappelletti
, Vida Ravanmehr, Seth Carbon
, Kent A. Shefchek, Benjamin M. Good
, James P. Balhoff
, Tommaso Fontana
, Hannah Blau
, Nicolas Matentzoglu
, Nomi L. Harris
, Monica C. Munoz-Torres, Melissa A. Haendel
, Peter N. Robinson, Marcin P. Joachimiak
, Christopher J. Mungall
:
KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response. Patterns 2(1): 100155 (2021) - Nicole A. Vasilevsky, Sabrina Toro, Nicolas Matentzoglu, Dazhi Jiao, Melissa A. Haendel, Peter N. Robinson, Christopher J. Mungall:
Reclassification of Infectious Disease in the Mondo Disease Ontology. ICBO 2021: 104-109 - Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Rui Zhang, John D. Osborne, Masoud Rouhizadeh, Yongqun He, Emily R. Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu:
An Open Natural Language Processing Development Framework for EHR-based Clinical Research: A case demonstration using the National COVID Cohort Collaborative (N3C). CoRR abs/2110.10780 (2021) - Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall:
A Simple Standard for Sharing Ontological Mappings (SSSOM). CoRR abs/2112.07051 (2021) - 2020
- Kent A. Shefchek
, Nomi L. Harris, Michael A. Gargano, Nicolas Matentzoglu
, Deepak R. Unni
, Matthew H. Brush, Dan Keith, Tom Conlin, Nicole A. Vasilevsky
, Xingmin Aaron Zhang, James P. Balhoff
, Larry Babb, Susan M. Bello, Hannah Blau, Yvonne M. Bradford, Seth Carbon, Leigh Carmody
, Lauren E. Chan, Valentina Cipriani, Alayne Cuzick
, Maria G. Della Rocca, Nathan A. Dunn, Shahim Essaid, Petra Fey, Christian A. Grove, Jean-Philippe F. Gourdine, Ada Hamosh, Midori A. Harris, Ingo Helbig, Maureen E. Hoatlin, Marcin P. Joachimiak
, Simon Jupp
, Kenneth B. Lett, Suzanna E. Lewis, Craig McNamara, Zoë May Pendlington
, Clare Pilgrim
, Tim E. Putman
, Vida Ravanmehr, Justin T. Reese, Erin Rooney Riggs, Sofia M. C. Robb, Paola Roncaglia
, James Seager
, Erik Segerdell
, Morgan Similuk, Andrea L. Storm, Courtney Thaxon, Anne E. Thessen, Julius O. B. Jacobsen, Julie A. McMurry, Tudor Groza
, Sebastian Köhler
, Damian Smedley, Peter N. Robinson
, Christopher J. Mungall, Melissa A. Haendel
, Monica C. Munoz-Torres
, David Osumi-Sutherland
:
The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species. Nucleic Acids Res. 48(Database-Issue): D704-D715 (2020) - Peter Händel, Özlem Tugfe Demir
, Emil Björnson
, Daniel Rönnow
:
Impact of Backward Crosstalk in 2 × 2 MIMO Transmitters on NMSE and Spectral Efficiency. IEEE Trans. Commun. 68(7): 4277-4292 (2020) - Johan Wahlström
, Isaac Skog
, Peter Händel
, Bill Bradley
, Samuel Madden, Hari Balakrishnan:
Smartphone Placement Within Vehicles. IEEE Trans. Intell. Transp. Syst. 21(2): 669-679 (2020) - Peter Händel
, Daniel Rönnow
:
MIMO and Massive MIMO Transmitter Crosstalk. IEEE Trans. Wirel. Commun. 19(3): 1882-1893 (2020) - Timo Kepp, Helge Sudkamp, Claus von der Burchard, Hendrik Schenke, Peter Koch, Gereon Hüttmann, Johann Roider, Mattias P. Heinrich
, Heinz Handels
:
Abstract: Segmentation of Retinal Low-Cost Optical Coherence Tomography Images Using Deep Learning. Bildverarbeitung für die Medizin 2020: 183 - Pol del Aguila Pla
, Lissy Pellaco, Satyam Dwivedi, Peter Händel, Joakim Jaldén:
Clock Synchronization Over Networks Using Sawtooth Models. ICASSP 2020: 5945-5949 - Arun Venkitaraman, Saikat Chatterjee, Peter Handel:
Gaussian Processes Over Graphs. ICASSP 2020: 5640-5644
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