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Publication search results
found 56 matches
- 2023
- Salaheddine Redouane, Houda Harmak, Zouhair Elkarhat, Hicham Charoute, Abderrahim Malki, Abdelhamid Barakat, Hassan Rouba:
Exploring the impact of CYP11A1's missense SNPs on the interaction between CYP11A1 and cholesterol: A comprehensive structural analysis and MD simulation study. Comput. Biol. Chem. 106: 107937 (2023) - Sithara Vivek, Jessica Faul, Bharat Thyagarajan, Weihua Guan:
Explainable variational autoencoder (E-VAE) model using genome-wide SNPs to predict dementia. J. Biomed. Informatics 148: 104536 (2023) - 2022
- Matteo Manfredi, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio:
E-SNPs&GO: embedding of protein sequence and function improves the annotation of human pathogenic variants. Bioinform. 38(23): 5168-5174 (2022) - Alexandr Boytsov, Sergey Abramov, Ariuna Z. Aiusheeva, Alexandra M. Kasianova, Eugene Baulin, Ivan A. Kuznetsov, Yurii S. Aulchenko, Semyon Kolmykov, Ivan S. Yevshin, Fedor A. Kolpakov, Ilya E. Vorontsov, Vsevolod J. Makeev, Ivan V. Kulakovskiy:
ANANASTRA: annotation and enrichment analysis of allele-specific transcription factor binding at SNPs. Nucleic Acids Res. 50(W1): 51-56 (2022) - Eiichi Tamiya:
Portable Electrochemical DNA Sensors Based on Gene Amplification Reactions to Screen and Identify Pathogen and SNPs. Sensors 22(5): 1865 (2022) - Evanjelin Mahmoodi, Anthony M. Musolf, James D. Malley, Daniel S. Kiser, Dwight Stambolian, Qing Li, Joan E. Bailey-Wilson:
Entanglement Mapping: A Novel Method to Detect Interacting SNPs in Genome-Wide Studies. CIBCB 2022: 1-10 - 2021
- Kimberly E. Taylor, K. Mark Ansel, Alexander Marson, Lindsey A. Criswell, Kyle Kai-How Farh:
PICS2: next-generation fine mapping via probabilistic identification of causal SNPs. Bioinform. 37(18): 3004-3007 (2021) - Younes Aftabi, Saleh Rafei, Habib Zarredar, Amir Amiri-Sadeghan, Mohsen Akbari-Shahpar, Zahra Khoshkam, Ensiyeh Seyedrezazadeh, Majid Khalili, Faramarz Mehrnejad, Sasan Fereidouni, B. Paige Lawrence:
Refinement of coding SNPs in the human aryl hydrocarbon receptor gene using ISNPranker: An integrative-SNP ranking web-tool. Comput. Biol. Chem. 90: 107416 (2021) - Serhan Yilmaz, Öznur Tastan, A. Ercüment Çiçek:
SPADIS: An Algorithm for Selecting Predictive and Diverse SNPs in GWAS. IEEE ACM Trans. Comput. Biol. Bioinform. 18(3): 1208-1216 (2021) - 2020
- E. Srinivasan, Nandhini Natarajan, R. Rajasekaran:
TTRMDB: A database for structural and functional analysis on the impact of SNPs over transthyretin (TTR) using bioinformatic tools. Comput. Biol. Chem. 87: 107290 (2020) - Yue Qu, Dat Tran, Elisa Martínez Marroquín:
Biogeographical Ancestry Inference from Genotype: A Comparison of Ancestral Informative SNPs and Genome-wide SNPs. SSCI 2020: 64-70 - 2019
- Juan Enrique Sánchez Lasheras, Sergio Luis Suárez Gómez, Jesús Daniel Santos Rodríguez, Gemma Castaño-Vinyals, Beatriz Pérez-Gómez, Adonina Tardón:
A multivariate regression approach for identification of SNPs importance in prostate cancer. J. Exp. Theor. Artif. Intell. 31(6): 817-828 (2019) - 2018
- Noor AlHuda Ali A. H. Saeed, Israa Hussein Hamzah, Alaa Naseer Mohammed Ali, Abdulwahab Ali Abuderman:
Prediction of single nucleotide polymorphisms (SNPs) in apolipoprotein E gene and their possible associations with a deleterious effect on the structure and functional properties: an in silico approach. Netw. Model. Anal. Health Informatics Bioinform. 7(1): 16 (2018) - Ronald J. Nowling, Scott J. Emrich:
Detecting Chromosomal Inversions from Dense SNPs by Combining PCA and Association Tests. BCB 2018: 270-276 - 2017
- Janne H. Korhonen, Kimmo Palin, Jussi Taipale, Esko Ukkonen:
Fast motif matching revisited: high-order PWMs, SNPs and indels. Bioinform. 33(4): 514-521 (2017) - 2016
- Mohamed M. Hassan, Shaza E. Omer, Rahma M. Khalf-allah, Razaz Y. Mustafa, Isra S. Ali, Sofia B. Mohamed:
Bioinformatics Approach for Prediction of Functional Coding/Noncoding Simple Polymorphisms (SNPs/Indels) in Human BRAF Gene. Adv. Bioinformatics 2016: 2632917:1-2632917:15 (2016) - Sercan Ergün, Serdar Oztuzcu:
Sequence-based analysis of 5′UTR and coding regions of CASP3 in terms of miRSNPs and SNPs in targetting miRNAs. Comput. Biol. Chem. 62: 70-74 (2016) - 2015
- Adolfo Flores Saiffe Farías, Enrique Jaime Herrera-López, Cristopher Jorge Moreno Vázquez, Wentian Li, Ernesto Prado Montes de Oca:
Predicting functional regulatory SNPs in the human antimicrobial peptide genes DEFB1 and CAMP in tuberculosis and HIV/AIDS. Comput. Biol. Chem. 59: 117-125 (2015) - John D. Eicher, Christa Landowski, Brian Stackhouse, Arielle Sloan, Wenjie Chen, Nicole Jensen, Ju-Ping Lien, Richard Leslie, Andrew D. Johnson:
GRASP v2.0: an update on the Genome-Wide Repository of Associations between SNPs and phenotypes. Nucleic Acids Res. 43(Database-Issue): 799-804 (2015) - Ilya E. Vorontsov, Ivan V. Kulakovskiy, Grigory Khimulya, Daria D. Nikolaeva, Vsevolod J. Makeev:
PERFECTOS-APE - Predicting Regulatory Functional Effect of SNPs by Approximate P-value Estimation. BIOINFORMATICS 2015: 102-108 - Ian Dunham, Eugene Kulesha, Valentina Iotchkova, Sandro Morganella, Ewan Birney:
FORGE: A tool to discover cell specific enrichments of GWAS associated SNPs in regulatory regions. F1000Research 4: 18 (2015) - 2014
- Luke Day, Ouala Abdelhadi Ep Souki, Andreas Alexander Albrecht, Kathleen Steinhöfel:
Accessibility of microRNA binding sites in metastable RNA secondary structures in the presence of SNPs. Bioinform. 30(3): 343-352 (2014) - Sercan Ergün, Serdar Oztuzcu:
Computational analysis of 3′UTR region of CASP3 with respect to miRSNPs and SNPs in targetting miRNAs. Comput. Biol. Chem. 53: 235-241 (2014) - Mojtabavi Naeini Marjan, Mesrian Tanha Hamzeh, Emamzadeh Rahman, Vallian Sadeq:
A computational prospect to aspirin side effects: Aspirin and COX-1 interaction analysis based on non-synonymous SNPs. Comput. Biol. Chem. 51: 57-62 (2014) - Hussein Sheikh Ali Mohamoud, Muhammad Ramzan Manwar Hussain, Ashraf A. El-Harouni, Noor Ahmad Shaik, Zaheer Ulhaq Qasmi, Amir Feisal Merican, Mukhtiar Baig, Yasir Anwar, Hani Asfour, Nabeel Bondagji, Jumana Yousuf Al-Aama:
First Comprehensive In Silico Analysis of the Functional and Structural Consequences of SNPs in Human GalNAc-T1 Gene. Comput. Math. Methods Medicine 2014: 904052:1-904052:15 (2014) - Saliha Ece Acuner Ozbabacan, Attila Gürsoy, Ruth Nussinov, Ozlem Keskin:
The Structural Pathway of Interleukin 1 (IL-1) Initiated Signaling Reveals Mechanisms of Oncogenic Mutations and SNPs in Inflammation and Cancer. PLoS Comput. Biol. 10(2) (2014) - 2013
- Phaik-Ling Ong, Yun-Huoy Choo, Nurul A. Emran:
Classification of SNPs for obesity analysis using FARNeM modelling. ISDA 2013: 265-270 - 2012
- Suresh K. Bhavnani, Gowtham Bellala, Sundar Victor, Kevin E. Bassler, Shyam Visweswaran:
The role of complementary bipartite visual analytical representations in the analysis of SNPs: a case study in ancestral informative markers. J. Am. Medical Informatics Assoc. 19(e1) (2012) - Haiquan Li, Younghee Lee, James L. Chen, Ellen Rebman, Jianrong Li, Yves A. Lussier:
Complex-disease networks of trait-associated single-nucleotide polymorphisms (SNPs) unveiled by information theory. J. Am. Medical Informatics Assoc. 19(2): 295-305 (2012) - Matthew E. Stokes, Shyam Visweswaran:
Network Label Propagation Yields Reproducible Biomarker SNPs in Alzheimer's Datasets. AMIA 2012
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