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@article{DBLP:journals/candc/RedouaneHECMBR23,
author = {Salaheddine Redouane and
Houda Harmak and
Zouhair Elkarhat and
Hicham Charoute and
Abderrahim Malki and
Abdelhamid Barakat and
Hassan Rouba},
title = {Exploring the impact of \emph{CYP11A1}'s missense SNPs on the interaction
between {CYP11A1} and cholesterol: {A} comprehensive structural analysis
and {MD} simulation study},
journal = {Comput. Biol. Chem.},
volume = {106},
pages = {107937},
year = {2023},
url = {https://doi.org/10.1016/j.compbiolchem.2023.107937},
doi = {10.1016/J.COMPBIOLCHEM.2023.107937},
timestamp = {Sun, 24 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/candc/RedouaneHECMBR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/VivekFTG23,
author = {Sithara Vivek and
Jessica Faul and
Bharat Thyagarajan and
Weihua Guan},
title = {Explainable variational autoencoder {(E-VAE)} model using genome-wide
SNPs to predict dementia},
journal = {J. Biomed. Informatics},
volume = {148},
pages = {104536},
year = {2023},
url = {https://doi.org/10.1016/j.jbi.2023.104536},
doi = {10.1016/J.JBI.2023.104536},
timestamp = {Mon, 15 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/VivekFTG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ManfrediSMC22,
author = {Matteo Manfredi and
Castrense Savojardo and
Pier Luigi Martelli and
Rita Casadio},
title = {E-SNPs{\&}GO: embedding of protein sequence and function improves
the annotation of human pathogenic variants},
journal = {Bioinform.},
volume = {38},
number = {23},
pages = {5168--5174},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btac678},
doi = {10.1093/BIOINFORMATICS/BTAC678},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ManfrediSMC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BoytsovAAKBKAKY22,
author = {Alexandr Boytsov and
Sergey Abramov and
Ariuna Z. Aiusheeva and
Alexandra M. Kasianova and
Eugene Baulin and
Ivan A. Kuznetsov and
Yurii S. Aulchenko and
Semyon Kolmykov and
Ivan S. Yevshin and
Fedor A. Kolpakov and
Ilya E. Vorontsov and
Vsevolod J. Makeev and
Ivan V. Kulakovskiy},
title = {{ANANASTRA:} annotation and enrichment analysis of allele-specific
transcription factor binding at SNPs},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{W1}},
pages = {51--56},
year = {2022},
url = {https://doi.org/10.1093/nar/gkac262},
doi = {10.1093/NAR/GKAC262},
timestamp = {Sun, 31 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/BoytsovAAKBKAKY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sensors/Tamiya22,
author = {Eiichi Tamiya},
title = {Portable Electrochemical {DNA} Sensors Based on Gene Amplification
Reactions to Screen and Identify Pathogen and SNPs},
journal = {Sensors},
volume = {22},
number = {5},
pages = {1865},
year = {2022},
url = {https://doi.org/10.3390/s22051865},
doi = {10.3390/S22051865},
timestamp = {Fri, 01 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/sensors/Tamiya22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibcb/MahmoodiMMKSLB22,
author = {Evanjelin Mahmoodi and
Anthony M. Musolf and
James D. Malley and
Daniel S. Kiser and
Dwight Stambolian and
Qing Li and
Joan E. Bailey{-}Wilson},
title = {Entanglement Mapping: {A} Novel Method to Detect Interacting SNPs
in Genome-Wide Studies},
booktitle = {{IEEE} Conference on Computational Intelligence in Bioinformatics
and Computational Biology, {CIBCB} 2022, Ottawa, ON, Canada, August
15-17, 2022},
pages = {1--10},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/CIBCB55180.2022.9863029},
doi = {10.1109/CIBCB55180.2022.9863029},
timestamp = {Wed, 07 Sep 2022 16:40:47 +0200},
biburl = {https://dblp.org/rec/conf/cibcb/MahmoodiMMKSLB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TaylorAMCF21,
author = {Kimberly E. Taylor and
K. Mark Ansel and
Alexander Marson and
Lindsey A. Criswell and
Kyle Kai{-}How Farh},
title = {{PICS2:} next-generation fine mapping via probabilistic identification
of causal SNPs},
journal = {Bioinform.},
volume = {37},
number = {18},
pages = {3004--3007},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab122},
doi = {10.1093/BIOINFORMATICS/BTAB122},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TaylorAMCF21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/AftabiRZAAKSKMF21,
author = {Younes Aftabi and
Saleh Rafei and
Habib Zarredar and
Amir Amiri{-}Sadeghan and
Mohsen Akbari{-}Shahpar and
Zahra Khoshkam and
Ensiyeh Seyedrezazadeh and
Majid Khalili and
Faramarz Mehrnejad and
Sasan Fereidouni and
B. Paige Lawrence},
title = {Refinement of coding SNPs in the human aryl hydrocarbon receptor gene
using ISNPranker: An integrative-SNP ranking web-tool},
journal = {Comput. Biol. Chem.},
volume = {90},
pages = {107416},
year = {2021},
url = {https://doi.org/10.1016/j.compbiolchem.2020.107416},
doi = {10.1016/J.COMPBIOLCHEM.2020.107416},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/candc/AftabiRZAAKSKMF21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YilmazTC21,
author = {Serhan Yilmaz and
{\"{O}}znur Tastan and
A. Erc{\"{u}}ment {\c{C}}i{\c{c}}ek},
title = {{SPADIS:} An Algorithm for Selecting Predictive and Diverse SNPs in
{GWAS}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {1208--1216},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2935437},
doi = {10.1109/TCBB.2019.2935437},
timestamp = {Sat, 20 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YilmazTC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/SrinivasanNR20,
author = {E. Srinivasan and
Nandhini Natarajan and
R. Rajasekaran},
title = {{TTRMDB:} {A} database for structural and functional analysis on the
impact of SNPs over transthyretin {(TTR)} using bioinformatic tools},
journal = {Comput. Biol. Chem.},
volume = {87},
pages = {107290},
year = {2020},
url = {https://doi.org/10.1016/j.compbiolchem.2020.107290},
doi = {10.1016/J.COMPBIOLCHEM.2020.107290},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/candc/SrinivasanNR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ssci/QuTM20,
author = {Yue Qu and
Dat Tran and
Elisa Mart{\'{\i}}nez Marroqu{\'{\i}}n},
title = {Biogeographical Ancestry Inference from Genotype: {A} Comparison of
Ancestral Informative SNPs and Genome-wide SNPs},
booktitle = {2020 {IEEE} Symposium Series on Computational Intelligence, {SSCI}
2020, Canberra, Australia, December 1-4, 2020},
pages = {64--70},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/SSCI47803.2020.9308171},
doi = {10.1109/SSCI47803.2020.9308171},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ssci/QuTM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jetai/LasherasGRCPT19,
author = {Juan Enrique S{\'{a}}nchez Lasheras and
Sergio Luis Su{\'{a}}rez G{\'{o}}mez and
Jes{\'{u}}s Daniel Santos Rodr{\'{\i}}guez and
Gemma Casta{\~{n}}o{-}Vinyals and
Beatriz P{\'{e}}rez{-}G{\'{o}}mez and
Adonina Tard{\'{o}}n},
title = {A multivariate regression approach for identification of SNPs importance
in prostate cancer},
journal = {J. Exp. Theor. Artif. Intell.},
volume = {31},
number = {6},
pages = {817--828},
year = {2019},
url = {https://doi.org/10.1080/0952813X.2018.1552319},
doi = {10.1080/0952813X.2018.1552319},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jetai/LasherasGRCPT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/netmahib/SaeedHAA18,
author = {Noor AlHuda Ali A. H. Saeed and
Israa Hussein Hamzah and
Alaa Naseer Mohammed Ali and
Abdulwahab Ali Abuderman},
title = {Prediction of single nucleotide polymorphisms (SNPs) in apolipoprotein
{E} gene and their possible associations with a deleterious effect
on the structure and functional properties: an in silico approach},
journal = {Netw. Model. Anal. Health Informatics Bioinform.},
volume = {7},
number = {1},
pages = {16},
year = {2018},
url = {https://doi.org/10.1007/s13721-018-0178-9},
doi = {10.1007/S13721-018-0178-9},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/netmahib/SaeedHAA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/NowlingE18,
author = {Ronald J. Nowling and
Scott J. Emrich},
editor = {Amarda Shehu and
Cathy H. Wu and
Christina Boucher and
Jing Li and
Hongfang Liu and
Mihai Pop},
title = {Detecting Chromosomal Inversions from Dense SNPs by Combining {PCA}
and Association Tests},
booktitle = {Proceedings of the 2018 {ACM} International Conference on Bioinformatics,
Computational Biology, and Health Informatics, {BCB} 2018, Washington,
DC, USA, August 29 - September 01, 2018},
pages = {270--276},
publisher = {{ACM}},
year = {2018},
url = {https://doi.org/10.1145/3233547.3233571},
doi = {10.1145/3233547.3233571},
timestamp = {Mon, 10 Jun 2024 20:41:10 +0200},
biburl = {https://dblp.org/rec/conf/bcb/NowlingE18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KorhonenPTU17,
author = {Janne H. Korhonen and
Kimmo Palin and
Jussi Taipale and
Esko Ukkonen},
title = {Fast motif matching revisited: high-order PWMs, SNPs and indels},
journal = {Bioinform.},
volume = {33},
number = {4},
pages = {514--521},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btw683},
doi = {10.1093/BIOINFORMATICS/BTW683},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KorhonenPTU17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/abi/HassanOKMAM16,
author = {Mohamed M. Hassan and
Shaza E. Omer and
Rahma M. Khalf{-}allah and
Razaz Y. Mustafa and
Isra S. Ali and
Sofia B. Mohamed},
title = {Bioinformatics Approach for Prediction of Functional Coding/Noncoding
Simple Polymorphisms (SNPs/Indels) in Human\emph{ BRAF} Gene},
journal = {Adv. Bioinformatics},
volume = {2016},
pages = {2632917:1--2632917:15},
year = {2016},
url = {https://doi.org/10.1155/2016/2632917},
doi = {10.1155/2016/2632917},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/abi/HassanOKMAM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/ErgunO16,
author = {Sercan Erg{\"{u}}n and
Serdar Oztuzcu},
title = {Sequence-based analysis of 5{\({'}\)}UTR and coding regions of
{CASP3} in terms of miRSNPs and SNPs in targetting miRNAs},
journal = {Comput. Biol. Chem.},
volume = {62},
pages = {70--74},
year = {2016},
url = {https://doi.org/10.1016/j.compbiolchem.2016.04.003},
doi = {10.1016/J.COMPBIOLCHEM.2016.04.003},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/candc/ErgunO16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/FariasLVLO15,
author = {Adolfo Flores Saiffe Far{\'{\i}}as and
Enrique Jaime Herrera{-}L{\'{o}}pez and
Cristopher Jorge Moreno V{\'{a}}zquez and
Wentian Li and
Ernesto Prado Montes de Oca},
title = {Predicting functional regulatory SNPs in the human antimicrobial peptide
genes {DEFB1} and {CAMP} in tuberculosis and {HIV/AIDS}},
journal = {Comput. Biol. Chem.},
volume = {59},
pages = {117--125},
year = {2015},
url = {https://doi.org/10.1016/j.compbiolchem.2015.09.002},
doi = {10.1016/J.COMPBIOLCHEM.2015.09.002},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/candc/FariasLVLO15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/EicherLSSCJLLJ15,
author = {John D. Eicher and
Christa Landowski and
Brian Stackhouse and
Arielle Sloan and
Wenjie Chen and
Nicole Jensen and
Ju{-}Ping Lien and
Richard Leslie and
Andrew D. Johnson},
title = {{GRASP} v2.0: an update on the Genome-Wide Repository of Associations
between SNPs and phenotypes},
journal = {Nucleic Acids Res.},
volume = {43},
number = {Database-Issue},
pages = {799--804},
year = {2015},
url = {https://doi.org/10.1093/nar/gku1202},
doi = {10.1093/NAR/GKU1202},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/EicherLSSCJLLJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biostec/VorontsovKKNM15,
author = {Ilya E. Vorontsov and
Ivan V. Kulakovskiy and
Grigory Khimulya and
Daria D. Nikolaeva and
Vsevolod J. Makeev},
editor = {Oscar Pastor and
Christine Sinoquet and
Ana L. N. Fred and
Hugo Gamboa and
Dirk Elias},
title = {{PERFECTOS-APE} - Predicting Regulatory Functional Effect of SNPs
by Approximate P-value Estimation},
booktitle = {{BIOINFORMATICS} 2015 - Proceedings of the International Conference
on Bioinformatics Models, Methods and Algorithms, Lisbon, Portugal,
12-15 January, 2015},
pages = {102--108},
publisher = {SciTePress},
year = {2015},
timestamp = {Thu, 21 Jan 2021 13:58:22 +0100},
biburl = {https://dblp.org/rec/conf/biostec/VorontsovKKNM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/DunhamKIMB15,
author = {Ian Dunham and
Eugene Kulesha and
Valentina Iotchkova and
Sandro Morganella and
Ewan Birney},
title = {{FORGE:} {A} tool to discover cell specific enrichments of {GWAS}
associated SNPs in regulatory regions},
journal = {F1000Research},
volume = {4},
pages = {18},
year = {2015},
url = {https://doi.org/10.12688/f1000research.6032.1},
doi = {10.12688/F1000RESEARCH.6032.1},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/f1000research/DunhamKIMB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DaySAS14,
author = {Luke Day and
Ouala Abdelhadi Ep Souki and
Andreas Alexander Albrecht and
Kathleen Steinh{\"{o}}fel},
title = {Accessibility of microRNA binding sites in metastable {RNA} secondary
structures in the presence of SNPs},
journal = {Bioinform.},
volume = {30},
number = {3},
pages = {343--352},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btt695},
doi = {10.1093/BIOINFORMATICS/BTT695},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DaySAS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/ErgunO14,
author = {Sercan Erg{\"{u}}n and
Serdar Oztuzcu},
title = {Computational analysis of 3{\({'}\)}UTR region of {CASP3} with
respect to miRSNPs and SNPs in targetting miRNAs},
journal = {Comput. Biol. Chem.},
volume = {53},
pages = {235--241},
year = {2014},
url = {https://doi.org/10.1016/j.compbiolchem.2014.10.004},
doi = {10.1016/J.COMPBIOLCHEM.2014.10.004},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/candc/ErgunO14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/MarjanHRS14,
author = {Mojtabavi Naeini Marjan and
Mesrian Tanha Hamzeh and
Emamzadeh Rahman and
Vallian Sadeq},
title = {A computational prospect to aspirin side effects: Aspirin and {COX-1}
interaction analysis based on non-synonymous SNPs},
journal = {Comput. Biol. Chem.},
volume = {51},
pages = {57--62},
year = {2014},
url = {https://doi.org/10.1016/j.compbiolchem.2014.05.002},
doi = {10.1016/J.COMPBIOLCHEM.2014.05.002},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/candc/MarjanHRS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmmm/MohamoudHESQMBAABA14,
author = {Hussein Sheikh Ali Mohamoud and
Muhammad Ramzan Manwar Hussain and
Ashraf A. El{-}Harouni and
Noor Ahmad Shaik and
Zaheer Ulhaq Qasmi and
Amir Feisal Merican and
Mukhtiar Baig and
Yasir Anwar and
Hani Asfour and
Nabeel Bondagji and
Jumana Yousuf Al{-}Aama},
title = {First Comprehensive \emph{In Silico} Analysis of the Functional and
Structural Consequences of SNPs in Human \emph{GalNAc-T1} Gene},
journal = {Comput. Math. Methods Medicine},
volume = {2014},
pages = {904052:1--904052:15},
year = {2014},
url = {https://doi.org/10.1155/2014/904052},
doi = {10.1155/2014/904052},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cmmm/MohamoudHESQMBAABA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/OzbabacanGNK14,
author = {Saliha Ece Acuner Ozbabacan and
Attila G{\"{u}}rsoy and
Ruth Nussinov and
Ozlem Keskin},
title = {The Structural Pathway of Interleukin 1 {(IL-1)} Initiated Signaling
Reveals Mechanisms of Oncogenic Mutations and SNPs in Inflammation
and Cancer},
journal = {PLoS Comput. Biol.},
volume = {10},
number = {2},
year = {2014},
url = {https://doi.org/10.1371/journal.pcbi.1003470},
doi = {10.1371/JOURNAL.PCBI.1003470},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/OzbabacanGNK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isda/OngCE13,
author = {Phaik{-}Ling Ong and
Yun{-}Huoy Choo and
Nurul A. Emran},
title = {Classification of SNPs for obesity analysis using FARNeM modelling},
booktitle = {13th International Conference on Intellient Systems Design and Applications,
{ISDA} 2013, Salangor, Malaysia, December 8-10, 2013},
pages = {265--270},
publisher = {{IEEE}},
year = {2013},
url = {https://doi.org/10.1109/ISDA.2013.6920746},
doi = {10.1109/ISDA.2013.6920746},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isda/OngCE13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/BhavnaniBVBV12,
author = {Suresh K. Bhavnani and
Gowtham Bellala and
Sundar Victor and
Kevin E. Bassler and
Shyam Visweswaran},
title = {The role of complementary bipartite visual analytical representations
in the analysis of SNPs: a case study in ancestral informative markers},
journal = {J. Am. Medical Informatics Assoc.},
volume = {19},
number = {e1},
year = {2012},
url = {https://doi.org/10.1136/amiajnl-2011-000745},
doi = {10.1136/AMIAJNL-2011-000745},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/BhavnaniBVBV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/LiLCRLL12,
author = {Haiquan Li and
Younghee Lee and
James L. Chen and
Ellen Rebman and
Jianrong Li and
Yves A. Lussier},
title = {Complex-disease networks of trait-associated single-nucleotide polymorphisms
(SNPs) unveiled by information theory},
journal = {J. Am. Medical Informatics Assoc.},
volume = {19},
number = {2},
pages = {295--305},
year = {2012},
url = {https://doi.org/10.1136/amiajnl-2011-000482},
doi = {10.1136/AMIAJNL-2011-000482},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/LiLCRLL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/StokesV12,
author = {Matthew E. Stokes and
Shyam Visweswaran},
title = {Network Label Propagation Yields Reproducible Biomarker SNPs in Alzheimer's
Datasets},
booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
Chicago, Illinois, USA, November 3-7, 2012},
publisher = {{AMIA}},
year = {2012},
url = {https://knowledge.amia.org/amia-55142-a2012a-1.636547/t-006-1.640361/f-001-1.640362/a-270-1.640400/a-271-1.640397},
timestamp = {Wed, 17 Apr 2024 11:48:03 +0200},
biburl = {https://dblp.org/rec/conf/amia/StokesV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ErtenALCK12,
author = {Sinan Erten and
Marzieh Ayati and
Yu Liu and
Mark R. Chance and
Mehmet Koyut{\"{u}}rk},
editor = {Sanjay Ranka and
Tamer Kahveci and
Mona Singh},
title = {Algorithms for detecting complementary SNPs within a region of interest
that are associated with diseases},
booktitle = {{ACM} International Conference on Bioinformatics, Computational Biology
and Biomedicine, BCB' 12, Orlando, FL, {USA} - October 08 - 10, 2012},
pages = {194--201},
publisher = {{ACM}},
year = {2012},
url = {https://doi.org/10.1145/2382936.2382961},
doi = {10.1145/2382936.2382961},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/ErtenALCK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/SuslovPESPK10,
author = {Valentin V. Suslov and
Petr M. Ponomarenko and
Vadim M. Efimov and
Ludmila K. Savinkova and
Mikhail P. Ponomarenko and
Nikolay A. Kolchanov},
title = {Snps in the {HIV-1} {TATA} Box and the Aids pandemic},
journal = {J. Bioinform. Comput. Biol.},
volume = {8},
number = {3},
pages = {607--625},
year = {2010},
url = {https://doi.org/10.1142/S0219720010004677},
doi = {10.1142/S0219720010004677},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/SuslovPESPK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/CalabriaMVMM10,
author = {Andrea Calabria and
Ettore Mosca and
Federica Viti and
Ivan Merelli and
Luciano Milanesi},
title = {SNPRanker: a tool for identification and scoring of SNPs associated
to target genes},
journal = {J. Integr. Bioinform.},
volume = {7},
number = {3},
year = {2010},
url = {https://doi.org/10.2390/biecoll-jib-2010-138},
doi = {10.2390/BIECOLL-JIB-2010-138},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/CalabriaMVMM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SacconeBTQMDTR10,
author = {Scott F. Saccone and
Raphael Bolze and
Prasanth Thomas and
Jiaxi Quan and
Gaurang Mehta and
Ewa Deelman and
Jay A. Tischfield and
John R. Rice},
title = {{SPOT:} a web-based tool for using biological databases to prioritize
SNPs after a genome-wide association study},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Web-Server-Issue},
pages = {201--209},
year = {2010},
url = {https://doi.org/10.1093/nar/gkq513},
doi = {10.1093/NAR/GKQ513},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SacconeBTQMDTR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/BushCTR09,
author = {William S. Bush and
Guanhua Chen and
Eric Torstenson and
Marylyn D. Ritchie},
title = {LD-Spline: Mapping SNPs on genotyping platforms to genomic regions
using patterns of linkage disequilibrium},
journal = {BioData Min.},
volume = {2},
pages = {7},
year = {2009},
url = {https://doi.org/10.1186/1756-0381-2-7},
doi = {10.1186/1756-0381-2-7},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/BushCTR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HoltTLNDWP09,
author = {Kathryn E. Holt and
Yik Y. Teo and
Heng Li and
Satheesh Nair and
Gordon Dougan and
John Wain and
Julian Parkhill},
title = {Detecting SNPs and estimating allele frequencies in clonal bacterial
populations by sequencing pooled {DNA}},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2074--2075},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp344},
doi = {10.1093/BIOINFORMATICS/BTP344},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HoltTLNDWP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LawrenceDMBCZ09,
author = {Robert Lawrence and
Aaron G. Day{-}Williams and
Richard Mott and
John Broxholme and
Lon R. Cardon and
Eleftheria Zeggini},
title = {{GLIDERS} - {A} web-based search engine for genome-wide linkage disequilibrium
between HapMap SNPs},
journal = {{BMC} Bioinform.},
volume = {10},
pages = {367},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-367},
doi = {10.1186/1471-2105-10-367},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LawrenceDMBCZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JohnsonHPNOB08,
author = {Andrew D. Johnson and
Robert E. Handsaker and
Sara L. Pulit and
Marcia M. Nizzari and
Christopher J. O'Donnell and
Paul I. W. de Bakker},
title = {{SNAP:} a web-based tool for identification and annotation of proxy
SNPs using HapMap},
journal = {Bioinform.},
volume = {24},
number = {24},
pages = {2938--2939},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn564},
doi = {10.1093/BIOINFORMATICS/BTN564},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JohnsonHPNOB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchwarzHEZBM08,
author = {Daniel F. Schwarz and
Oliver H{\"{a}}dicke and
Jeanette Erdmann and
Andreas Ziegler and
Daniel Bayer and
Steffen M{\"{o}}ller},
title = {SNPtoGO: characterizing SNPs by enriched {GO} terms},
journal = {Bioinform.},
volume = {24},
number = {1},
pages = {146--148},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btm551},
doi = {10.1093/BIOINFORMATICS/BTM551},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchwarzHEZBM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SongKGWT07,
author = {Young C. Song and
Edward A. Kawas and
Benjamin M. Good and
Mark D. Wilkinson and
Scott J. Tebbutt},
title = {DataBiNS: a BioMoby-based data-mining workflow for biological pathways
and non-synonymous SNPs},
journal = {Bioinform.},
volume = {23},
number = {6},
pages = {780--782},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btl648},
doi = {10.1093/BIOINFORMATICS/BTL648},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SongKGWT07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BurkeWPCSTB07,
author = {David F. Burke and
Catherine L. Worth and
Eva{-}Maria Priego and
Tammy M. K. Cheng and
Luc J. Smink and
John A. Todd and
Tom L. Blundell},
title = {Genome bioinformatic analysis of nonsynonymous SNPs},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-301},
doi = {10.1186/1471-2105-8-301},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BurkeWPCSTB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijbra/EbbertBOCM07,
author = {Mark T. W. Ebbert and
Wesley A. Beckstead and
Timothy O'Connor and
Mark J. Clement and
David A. McClellan},
title = {Pharmacogenomics: analysing SNPs in the {CYP2D6} gene using amino
acid properties},
journal = {Int. J. Bioinform. Res. Appl.},
volume = {3},
number = {4},
pages = {471--479},
year = {2007},
url = {https://doi.org/10.1504/IJBRA.2007.015415},
doi = {10.1504/IJBRA.2007.015415},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijbra/EbbertBOCM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SoleGVIM06,
author = {Xavier Sol{\'{e}} and
Elisabet Guin{\'{o}} and
Joan Valls and
Raquel Iniesta and
V{\'{\i}}ctor Moreno},
title = {SNPStats: a web tool for the analysis of association studies},
journal = {Bioinform.},
volume = {22},
number = {15},
pages = {1928--1929},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl268},
doi = {10.1093/BIOINFORMATICS/BTL268},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SoleGVIM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YueMM06,
author = {Peng Yue and
Eugene Melamud and
John Moult},
title = {SNPs3D: Candidate gene and {SNP} selection for association studies},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {166},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-166},
doi = {10.1186/1471-2105-7-166},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YueMM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/BakkerGAHH06,
author = {Paul I. W. de Bakker and
Robert R. Graham and
David Altshuler and
Brian E. Henderson and
Christopher A. Haiman},
editor = {Russ B. Altman and
Tiffany Murray and
Teri E. Klein and
A. Keith Dunker and
Lawrence Hunter},
title = {Transferability of Tag SNPs to Capture Common Genetic Variation in
{DNA} Repair Genes Across Multiple Populations},
booktitle = {Biocomputing 2006, Proceedings of the Pacific Symposium, Maui, Hawaii,
USA, 3-7 January 2006},
pages = {478--486},
publisher = {World Scientific},
year = {2006},
url = {http://psb.stanford.edu/psb-online/proceedings/psb06/debakker.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/BakkerGAHH06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DiMWHLDBHCYSKKMJC05,
author = {Xiaojun Di and
Hajime Matsuzaki and
Teresa A. Webster and
Earl Hubbell and
Guoying Liu and
Shoulian Dong and
Dan Bartell and
Jing Huang and
Richard Chiles and
Geoffrey Yang and
Mei{-}mei Shen and
David Kulp and
Giulia C. Kennedy and
Rui Mei and
Keith W. Jones and
Simon Cawley},
title = {Dynamic model based algorithms for screening and genotyping over 100K
SNPs on oligonucleotide microarrays},
journal = {Bioinform.},
volume = {21},
number = {9},
pages = {1958--1963},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti275},
doi = {10.1093/BIOINFORMATICS/BTI275},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DiMWHLDBHCYSKKMJC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KarchinDKTPEHS05,
author = {Rachel Karchin and
Mark Diekhans and
Libusha Kelly and
Daryl J. Thomas and
Ursula Pieper and
Narayanan Eswar and
David Haussler and
Andrej Sali},
title = {{LS-SNP:} large-scale annotation of coding non-synonymous SNPs based
on multiple information sources},
journal = {Bioinform.},
volume = {21},
number = {12},
pages = {2814--2820},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti442},
doi = {10.1093/BIOINFORMATICS/BTI442},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KarchinDKTPEHS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuGHSPVZH05,
author = {Hong Xu and
Simon G. Gregory and
Elizabeth R. Hauser and
Judith E. Stenger and
Margaret A. Pericak{-}Vance and
Jeffery M. Vance and
Stephan Z{\"{u}}chner and
Michael A. Hauser},
title = {SNPselector: a web tool for selecting SNPs for genetic association
studies},
journal = {Bioinform.},
volume = {21},
number = {22},
pages = {4181--4186},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti682},
doi = {10.1093/BIOINFORMATICS/BTI682},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuGHSPVZH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SavageBELLLMBSE05,
author = {David Savage and
Jacqueline Batley and
Timothy A. Erwin and
Erica Logan and
Christopher G. Love and
Geraldine A. C. Lim and
Emmanuel Mongin and
Gary Barker and
German C. Spangenberg and
David Edwards},
title = {SNPServer: a real-time {SNP} discovery tool},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Web-Server-Issue},
pages = {493--495},
year = {2005},
url = {https://doi.org/10.1093/nar/gki462},
doi = {10.1093/NAR/GKI462},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SavageBELLLMBSE05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/LinCHCG04,
author = {Eugene Lin and
Dennis Chen and
Yuchi Hwang and
Ashely Chang and
Z. John Gu},
title = {A Prediction Model for the Drug Efficacy of Interferon in {CHC} Patients
Based on SNPs},
booktitle = {3rd International {IEEE} Computer Society Computational Systems Bioinformatics
Conference, {CSB} 2004, Stanford, CA, USA, August 16-19, 2004},
pages = {658--659},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/CSB.2004.1332535},
doi = {10.1109/CSB.2004.1332535},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/LinCHCG04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icpads/SongLHGLZZCZ04,
author = {Justin J. Song and
Eric Q. Li and
Wei Hu and
Steven Ge and
Chunrong Lai and
Yimin Zhang and
Xuegong Zhang and
Wenguang Chen and
Weimin Zheng},
title = {Parallelization of Bayesian Network based SNPs Pattern Analysis and
Performance Characterization on {SMP/HT}},
booktitle = {10th International Conference on Parallel and Distributed Systems,
{ICPADS} 2004, Newport Beach, CA, USA, July 7-9, 2004},
pages = {315--322},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.ieeecomputersociety.org/10.1109/ICPADS.2004.62},
doi = {10.1109/ICPADS.2004.62},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icpads/SongLHGLZZCZ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ClarkDA02,
author = {Andrew G. Clark and
Emmanouil T. Dermitzakis and
Stylianos E. Antonarakis},
editor = {Sorin Istrail and
Michael S. Waterman and
Andrew G. Clark},
title = {Trisomic Phase Inference},
booktitle = {Computational Methods for SNPs and Haplotype Inference, {DIMACS/RECOMB}
Satellite Workshop, Piscataway, NJ, USA, November 21-22, 2002, Revised
Papers},
series = {Lecture Notes in Computer Science},
volume = {2983},
pages = {1--8},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/978-3-540-24719-7\_1},
doi = {10.1007/978-3-540-24719-7\_1},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ClarkDA02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HalldorssonBELYI02,
author = {Bjarni V. Halld{\'{o}}rsson and
Vineet Bafna and
Nathan Edwards and
Ross Lippert and
Shibu Yooseph and
Sorin Istrail},
editor = {Sorin Istrail and
Michael S. Waterman and
Andrew G. Clark},
title = {A Survey of Computational Methods for Determining Haplotypes},
booktitle = {Computational Methods for SNPs and Haplotype Inference, {DIMACS/RECOMB}
Satellite Workshop, Piscataway, NJ, USA, November 21-22, 2002, Revised
Papers},
series = {Lecture Notes in Computer Science},
volume = {2983},
pages = {26--47},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/978-3-540-24719-7\_3},
doi = {10.1007/978-3-540-24719-7\_3},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HalldorssonBELYI02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ThompsonC02,
author = {E. A. Thompson and
Nicola H. Chapman},
editor = {Sorin Istrail and
Michael S. Waterman and
Andrew G. Clark},
title = {Haplotype Blocks in Small Populations},
booktitle = {Computational Methods for SNPs and Haplotype Inference, {DIMACS/RECOMB}
Satellite Workshop, Piscataway, NJ, USA, November 21-22, 2002, Revised
Papers},
series = {Lecture Notes in Computer Science},
volume = {2983},
pages = {74--83},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/978-3-540-24719-7\_6},
doi = {10.1007/978-3-540-24719-7\_6},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ThompsonC02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/PonomarenkoMOFGP01,
author = {Julia V. Ponomarenko and
Tatyana I. Merkulova and
Galina Orlova and
Oleg N. Fokin and
Elena Gorshkova and
Mikhail P. Ponomarenko},
editor = {Edgar Wingender},
title = {Mining SNPs for Associating Disease Penetration with Transcription
Factor Binding Site Alterations},
booktitle = {Computer science and biology: Proceedings of the German Conference
on Bioinformatics, {GCB} 2001, October 7-10, 2001, Braunschweig, Germany},
pages = {112--117},
publisher = {German Research Center for Biotechnology},
year = {2001},
timestamp = {Tue, 15 Mar 2005 13:06:29 +0100},
biburl = {https://dblp.org/rec/conf/gcb/PonomarenkoMOFGP01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SempleMPE00,
author = {C. A. M. Semple and
S. W. Morris and
David J. Porteous and
Kathryn L. Evans},
title = {In silico identification of transcripts and SNPs from a region of
4p linked with bipolar affective disorder},
journal = {Bioinform.},
volume = {16},
number = {8},
pages = {735--738},
year = {2000},
url = {https://doi.org/10.1093/bioinformatics/16.8.735},
doi = {10.1093/BIOINFORMATICS/16.8.735},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SempleMPE00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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