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Publication search results
found 41 matches
- 2024
- Sarah J. Wait, Marc Expòsit, Sophia Lin, Michael Rappleye, Justin Daho Lee, Samuel A. Colby, Lily Torp, Anthony Asencio, Annette Smith, Michael Regnier, Farid Moussavi-Harami, David Baker, Christina K. Kim, Andre Berndt:
Machine learning-guided engineering of genetically encoded fluorescent calcium indicators. Nat. Comput. Sci. 4(3): 224-236 (2024) - 2023
- Cogan Shimizu, Shirly Stephen, Rui Zhu, Kitty Currier, Mark Schildhauer, Dean Rehberger, Pascal Hitzler, Krzysztof Janowicz, Colby K. Fisher, Mohammad Saeid Mahdavinejad, Antrea Christou, Adrita Barua, Abhilekha Dalal, Sanaz Saki Norouzi, Zilong Liu, Meilin Shi, Ling Cai, Gengchen Mai, Zhangyu Wang, Yuanyuan Tian:
The KnowWhereGraph Ontology: A Showcase. JOWO 2023 - Cogan Shimizu, Shirly Stephen, Antrea Christou, Kitty Currier, Mohammad Saeid Mahdavinejad, Sanaz Saki Norouzi, Abhilekha Dalal, Adrita Barua, Colby K. Fisher, Anthony D'Onofrio, Thomas Thelen, Krzysztof Janowicz, Dean Rehberger, Mark Schildhauer, Pascal Hitzler:
KnowWhereGraph-Lite: A Perspective of the KnowWhereGraph. KGSWC 2023: 199-212 - Mark Mazumder, Colby R. Banbury, Xiaozhe Yao, Bojan Karlas, William Gaviria Rojas, Sudnya Frederick Diamos, Greg Diamos, Lynn He, Alicia Parrish, Hannah Rose Kirk, Jessica Quaye, Charvi Rastogi, Douwe Kiela, David Jurado, David Kanter, Rafael Mosquera, Will Cukierski, Juan Ciro, Lora Aroyo, Bilge Acun, Lingjiao Chen, Mehul Raje, Max Bartolo, Evan Sabri Eyuboglu, Amirata Ghorbani, Emmett D. Goodman, Addison Howard, Oana Inel, Tariq Kane, Christine R. Kirkpatrick, D. Sculley, Tzu-Sheng Kuo, Jonas W. Mueller, Tristan Thrush, Joaquin Vanschoren, Margaret Warren, Adina Williams, Serena Yeung, Newsha Ardalani, Praveen K. Paritosh, Ce Zhang, James Y. Zou, Carole-Jean Wu, Cody Coleman, Andrew Y. Ng, Peter Mattson, Vijay Janapa Reddi:
DataPerf: Benchmarks for Data-Centric AI Development. NeurIPS 2023 - Jeffrey D. Rudie, Rachit Saluja, David A. Weiss, Pierre Nedelec, Evan Calabrese, John B. Colby, Benjamin Laguna, John Mongan, Steve Braunstein, Christopher Paul Hess, Andreas M. Rauschecker, Leo P. Sugrue, Javier E. Villanueva-Meyer:
The University of California San Francisco, Brain Metastases Stereotactic Radiosurgery (UCSF-BMSR) MRI Dataset. CoRR abs/2304.07248 (2023) - 2022
- Mark Mazumder, Colby R. Banbury, Xiaozhe Yao, Bojan Karlas, William Gaviria Rojas, Sudnya Frederick Diamos, Greg Diamos, Lynn He, Douwe Kiela, David Jurado, David Kanter, Rafael Mosquera, Juan Ciro, Lora Aroyo, Bilge Acun, Sabri Eyuboglu, Amirata Ghorbani, Emmett D. Goodman, Tariq Kane, Christine R. Kirkpatrick, Tzu-Sheng Kuo, Jonas Mueller, Tristan Thrush, Joaquin Vanschoren, Margaret Warren, Adina Williams, Serena Yeung, Newsha Ardalani, Praveen K. Paritosh, Ce Zhang, James Zou, Carole-Jean Wu, Cody Coleman, Andrew Y. Ng, Peter Mattson, Vijay Janapa Reddi:
DataPerf: Benchmarks for Data-Centric AI Development. CoRR abs/2207.10062 (2022) - 2021
- Madison R. Blumer, Christine H. Chang, Evangelina Brayfindley, Jamie R. Nuñez, Sean M. Colby, Ryan S. Renslow, Thomas O. Metz:
Mass Spectrometry Adduct Calculator. J. Chem. Inf. Model. 61(12): 5721-5725 (2021) - Martin Mladenov, Chih-Wei Hsu, Vihan Jain, Eugene Ie, Christopher Colby, Nicolas Mayoraz, Hubert Pham, Dustin Tran, Ivan Vendrov, Craig Boutilier:
RecSim NG: Toward Principled Uncertainty Modeling for Recommender Ecosystems. CoRR abs/2103.08057 (2021) - 2020
- Ernest Turro, William J. Astle, Karyn Megy, Stefan Gräf, Daniel Greene, Olga Shamardina, Hana Lango Allen, Alba Sanchis-Juan, Mattia Frontini, Chantal Thys, Jonathan Stephens, Rutendo Mapeta, Oliver S. Burren, Kate Downes, Matthias Haimel, Salih Tuna, Sri V. V. Deevi, Timothy J. Aitman, David L. H. Bennett, Paul Calleja, Keren Carss, Mark J. Caulfield, Patrick F. Chinnery, Peter H. Dixon, Daniel P. Gale, Roger James, Ania Koziell, Michael A. Laffan, Adam P. Levine, Eamonn R. Maher, Hugh S. Markus, Joannella Morales, Nicholas W. Morrell, Andrew D. Mumford, Elizabeth Ormondroyd, Stuart Rankin, Augusto Rendon, Sylvia Richardson, Irene Roberts, Noemi B. A. Roy, Moin A. Saleem, Kenneth G. C. Smith, Hannah Stark, Rhea Y. Y. Tan, Andreas C. Themistocleous, Adrian J. Thrasher, Hugh Watkins, Andrew R. Webster, Martin R. Wilkins, Catherine Williamson, James Whitworth, Sean Humphray, David R. Bentley, Stephen Abbs, Lara Abulhoul, Julian Adlard, Munaza Ahmed, Hana Alachkar, David J. Allsup, Jeff Almeida-King, Philip Ancliff, Richard Antrobus, Ruth Armstrong, Gavin Arno, Sofie Ashford, Anthony Attwood, Paul Aurora, Christian Babbs, Chiara Bacchelli, Tamam Bakchoul, Siddharth Banka, Tadbir Bariana, Julian Barwell, Joana Batista, Helen E. Baxendale, Phil L. Beales, Agnieszka Bierzynska, Tina Biss, Maria A. K. Bitner-Glindzicz, Graeme C. M. Black, Marta Bleda, Iulia Blesneac, Detlef Bockenhauer, Harm Bogaard, Christian J. Bourne, Sara Boyce, John R. Bradley, Eugene Bragin, Gerome Breen, Paul Brennan, Carole Brewer, Matthew Brown, Andrew C. Browning, Michael J. Browning, Rachel J. Buchan, Matthew S. Buckland, Teofila Bueser, Carmen Bugarin Diz, John Burn, Siobhan O. Burns, Nigel Burrows, Carolyn Campbell, Gerald Carr-White, Ruth Casey, Jenny Chambers, John Chambers, Melanie M. Y. Chan, Calvin Cheah, Floria Cheng, Manali Chitre, Martin T. Christian, Colin Church, Jill Clayton-Smith, Maureen Cleary, Naomi Clements Brod, Gerry Coghlan, Elizabeth Colby, Trevor R. P. Cole, Janine Collins, Peter W. Collins, Camilla Colombo, Cecilia J. Compton, Robin Condliffe, Stuart A. Cook, H. Terence Cook, Nichola Cooper, Paul A. Corris, Abigail Furnell, Fiona Cunningham, Nicola S. Curry, Antony J. Cutler, Matthew J. Daniels, Mehul Dattani, Louise C. Daugherty, John Davis, Anthony De Soyza, Timothy Dent, Charu Deshpande, Eleanor F. Dewhurst, Sofia Douzgou, Anna M. Drazyk, Elizabeth Drewe, Daniel Duarte, Tina Dutt, J. David M. Edgar, Karen Edwards, William Egner, Melanie N. Ekani, Perry Elliott, Wendy N. Erber, Marie Erwood, Maria C. Estiu, Dafydd Gareth Evans, Gillian Evans, Tamara Everington, Mélanie Eyries, Hiva Fassihi, Remi Favier, Jack Findhammer, Debra Fletcher, Frances A. Flinter, R. Andres Floto, Tom Fowler, James Fox, Amy J. Frary, Courtney E. French, Kathleen Freson, Henning Gall, Vijeya Ganesan, Michael Gattens, Claire Geoghegan, Terence S. A. Gerighty, Ali G. Gharavi, Stefano Ghio, Hossein-Ardeschir Ghofrani, J. Simon R. Gibbs, Kate Gibson, Kimberly C. Gilmour, Barbara Girerd, Nicholas S. Gleadall, Sarah Goddard, David B. Goldstein, Keith Gomez, Pavels Gordins, David Gosal, Jodie Graham, Luigi Grassi, Lynn Greenhalgh, Andreas Greinacher, Paolo Gresele, Philip Griffiths, Sofia Grigoriadou, Russell J. Grocock, Detelina Grozeva, Mark Gurnell, Scott Hackett, Charaka Hadinnapola, William M. Hague, Rosie Hague, Matthew Hall, Helen L. Hanson, Eshika Haque, Kirsty Harkness, Andrew R. Harper, Claire L. Harris, Daniel Hart, Ahamad Hassan, Grant Hayman, Alex Henderson, Archana Herwadkar, Jonathan Hoffman, Simon Holden, Rita Horvath, Henry Houlden, Arjan C. Houweling, Luke S. G. E. Howard, Fengyuan Hu, Gavin Hudson, Joseph Hughes, Aarnoud P. Huissoon, Marc Humbert, Sarah Hunter, Matthew E. Hurles, Melita Irving, Louise Izatt, Sally A. Johnson, Stephen Jolles, Jennifer Jolley, Dragana Josifova, Neringa Jurkute, Tim Karten, Johannes Karten, Mary A. Kasanicki, Hanadi Kazkaz, Rashid Kazmi, Peter Kelleher, Anne M. Kelly, Wilf Kelsall, Carly Kempster, David G. Kiely, Nathalie Kingston, Robert Klima, Nils Koelling, Myrto Kostadima, Gabor Kovacs, Roman Kreuzhuber, Taco W. Kuijpers, Ajith Kumar, Dinakantha Kumararatne, Manju A. Kurian, Fiona Lalloo, Michele Lambert, Allan Lawrie, D. Mark Layton, Nick Lench, Claire Lentaigne, Tracy Lester, Rachel Linger, Hilary Longhurst, Lorena E. Lorenzo, Eleni Louka, Paul A. Lyons, Rajiv D. Machado, Robert V. MacKenzie Ross, Bella Madan, Jesmeen Maimaris, Samantha Malka, Sarah Mangles, Kevin J. Marchbank, Stephen Marks, Hanns-Ulrich Marschall, Andrew G. Marshall, Jennifer Martin, Mary Mathias, Emma Matthews, Heather Maxwell, Paul McAlinden, Mark I. McCarthy, Harriet McKinney, Aoife McMahon, Stuart Meacham, Adam J. Mead, Ignacio Medina Castello, Sarju G. Mehta, Michel Michaelides, Carolyn Millar, Shehla N. Mohammed, Shahin Moledina, David Montani, Anthony T. Moore, Monika Mozere, Keith W. Muir, Andrea H. Nemeth, William G. Newman, Michael Newnham, Sadia Noorani, Paquita Nurden, Jennifer O'Sullivan, Samya Obaji, Chris Odhams, Steven Okoli, Andrea Olschewski, Horst Olschewski, Kai Ren Ong, S. Helen Oram, Willem H. Ouwehand, Claire Palles, Sofia Papadia, Soo-Mi Park, David Parry, Smita Patel, Joan Paterson, Andrew Peacock, Simon H. Pearce, John Peden, Kathelijne Peerlinck, Christopher J. Penkett, Joanna Pepke-Zaba, Romina Petersen, Clarissa Pilkington, Kenneth E. S. Poole, Radhika Prathalingam, Bethan Psaila, Angela Pyle, Richard Quinton, Shamima Rahman, Anupama Rao, F. Lucy Raymond, Paula J. Rayner-Matthews, Christine Rees, Tara Renton, Christopher J. Rhodes, Andrew S. C. Rice, Alex Richter, Leema Robert, Anthony Rogers, Sarah J. Rose, Robert Ross-Russell, Catherine Roughley, Deborah M. Ruddy, Omid Sadeghi-Alavijeh, Nilesh J. Samani, Crina Samarghitean, Ravishankar B. Sargur, Robert N. Sarkany, Simon Satchell, Sinisa Savic, John A. Sayer, Genevieve Sayer, Laura Scelsi, Andrew M. Schaefer, Sol Schulman, Richard Scott, Marie Scully, Claire Searle, Werner Seeger, Arjune Sen, W. A. Carrock Sewell, Denis Seyres, Neil Shah, Susan E. Shapiro, Adam C. Shaw, Patrick J. Short, Keith Sibson, Lucy Side, Ilenia Simeoni, Michael A. Simpson, Matthew C. Sims, Suthesh Sivapalaratnam, Damian Smedley, Katherine R. Smith, Katie Snape, Nicole Soranzo, Florent Soubrier, Laura Southgate, Olivera Spasic-Boskovic, Simon Staines, Emily Staples, Charles A. Steward, Kathleen E. Stirrups, Alex Stuckey, Jay Suntharalingam, Emilia M. Swietlik, Petros Syrris, R. Campbell Tait, Kate Talks, Katie Tate, John M. Taylor, Jenny C. Taylor, James E. Thaventhiran, Ellen Thomas, David Thomas, Moira J. Thomas, Patrick Thomas, Kate Thomson, Glen Threadgold, Tobias Tilly, Marc Tischkowitz, Catherine Titterton, John A. Todd, Cheng-Hock Toh, Bas Tolhuis, Ian P. Tomlinson, Mark Toshner, Matthew Traylor, Carmen Treacy, Paul Treadaway, Richard Trembath, Wojciech Turek, Philip Twiss, Tom Vale, Chris Van Geet, Natalie van Zuydam, Maarten Vandekuilen, Anthony M. Vandersteen, Marta Vazquez-Lopez, Julie von Ziegenweidt, Anton Vonk-Noordegraaf, Annette Wagner, Quinten Waisfisz, Suellen M. Walker, Neil Walker, Klaudia Walter, James S. Ware, Christopher Watt, Lucy Wedderburn, Wei Wei, Steven B. Welch, Julie Wessels, Sarah K. Westbury, John-Paul Westwood, John Wharton, Deborah Whitehorn, Andrew O. M. Wilkie, Brian T. Wilson, Edwin K. S. Wong, Nicholas W. Wood, Yvette Wood, Christopher Geoffrey Woods, Emma R. Woodward, Stephen J. Wort, Austen Worth, Michael Wright, Katherine Yates, Patrick F. K. Yong, Timothy Young, Ping Yu, Patrick Yu-Wai-Man, Eliska Zlamalova:
Whole-genome sequencing of patients with rare diseases in a national health system. Nat. 583(7814): 96-102 (2020) - Christa Cannell, Colby Tofel-Grehl, Kristin A. Searle:
Using Circuit Playground Express and Maps To Visualize Population Migration Data. ICLS 2020 - Martin Mladenov, Chih-Wei Hsu, Vihan Jain, Eugene Ie, Christopher Colby, Nicolas Mayoraz, Hubert Pham, Dustin Tran, Ivan Vendrov, Craig Boutilier:
Demonstrating Principled Uncertainty Modeling for Recommender Ecosystems with RecSim NG. RecSys 2020: 591-593 - 2019
- Kun Yang, Yi-Fan Chen, Georgios Roumpos, Chris Colby, John R. Anderson:
High performance Monte Carlo simulation of ising model on TPU clusters. SC 2019: 83:1-83:15 - Kun Yang, Yi-Fan Chen, George Roumpos, Chris Colby, John R. Anderson:
High Performance Monte Carlo Simulation of Ising Model on TPU Clusters. CoRR abs/1903.11714 (2019) - 2018
- Nicolás F. Soria Zurita, Mitchell K. Colby, Irem Y. Tumer, Christopher Hoyle, Kagan Tumer:
Design of Complex Engineered Systems Using Multi-Agent Coordination. J. Comput. Inf. Sci. Eng. 18(1) (2018) - 2017
- Xin Li, Yungil Kim, Emily K. Tsang, Joe R. Davis, Farhan N. Damani, Colby Chiang, Gaelen T. Hess, Zachary Zappala, Benjamin J. Strober, Alexandra J. Scott, Amy Li, Andrea Ganna, Michael C. Bassik, Jason D. Merker, François Aguet, Kristin G. Ardlie, Beryl B. Cummings, Ellen T. Gelfand, Gad Getz, Kane Hadley, Robert E. Handsaker, Katherine H. Huang, Seva Kashin, Konrad J. Karczewski, Monkol Lek, Xiao Li, Daniel G. MacArthur, Jared L. Nedzel, Duyen T. Nguyen, Michael S. Noble, Ayellet V. Segrè, Casandra A. Trowbridge, Taru Tukiainen, Nathan S. Abell, Brunilda Balliu, Ruth Barshir, Omer Basha, Alexis J. Battle, Gireesh K. Bogu, Andrew Brown, Christopher D. Brown, Stephane E. Castel, Lin S. Chen, Donald F. Conrad, Nancy J. Cox, Olivier Delaneau, Emmanouil T. Dermitzakis, Barbara E. Engelhardt, Eleazar Eskin, Pedro G. Ferreira, Laure Frésard, Eric R. Gamazon, Diego Garrido-Martín, Ariel D. H. Gewirtz, Genna Gliner, Michael J. Gloudemans, Roderic Guigó, Ira M. Hall, Buhm Han, Yuan He, Farhad Hormozdiari, Cedric Howald, Hae Kyung Im, Brian Jo, Eun Yong Kang, Sarah Kim-Hellmuth, Tuuli Lappalainen, Gen Li, Boxiang Liu, Serghei Mangul, Mark I. McCarthy, Ian C. McDowell, Pejman Mohammadi, Jean Monlong, Stephen B. Montgomery:
The impact of rare variation on gene expression across tissues. Nat. 550(7675): 239-243 (2017) - Richard Allen White III, Joseph Brown, Sean Colby, Christopher C. Overall, Joon-Yong Lee, Jeremy Zucker, Kurt R. Glaesemann, Christer Jansson, Janet K. Jansson:
ATLAS (Automatic Tool for Local Assembly Structures) - a comprehensive infrastructure for assembly, annotation, and genomic binning of metagenomic and metatranscriptomic data. PeerJ Prepr. 5: e2843 (2017) - Richard Allen White III, Ajay Panyala, Kevin Glass, Sean Colby, Kurt R. Glaesemann, Christer Jansson, Janet K. Jansson:
MerCat: a versatile k-mer counter and diversity estimator for database-independent property analysis obtained from metagenomic and/or metatranscriptomic sequencing data. PeerJ Prepr. 5: e2825 (2017) - 2015
- Mitchell K. Colby, Sepideh Kharaghani, Chris HolmesParker, Kagan Tumer:
Counterfactual Exploration for Improving Multiagent Learning. AAMAS 2015: 171-179 - 2014
- Christopher M. Hudson, Eric K. Hall, Glenn D. Colby:
AISR Missions on Intelsat EpicNG Ku-Band. MILCOM 2014: 1351-1355 - 2012
- James P. Carson, Andrew P. Kuprat, Sean M. Colby, Cassi A. Davis, Christopher A. Basciano, Kevin Greene, John Feo, Andrew Kennedy:
Detecting distance between injected microspheres and target tumor via 3D reconstruction of tissue sections. EMBC 2012: 1149-1152 - 2011
- Christopher Bennett, Richard McNeer, Colby Leider:
Urgency Analysis of Audible Alarms in The Operating Room. ISMIR 2011: 771-776 - 2009
- Jack Welch, Don Backer, Leo Blitz, Douglas C.-J. Bock, Geoffrey C. Bower, Calvin Cheng, Steve Croft, Matt Dexter, Greg Engargiola, Ed Fields, James Forster, Colby Gutierrez-Kraybill, Carl Heiles, Tamara Helfer, Susanne Jorgensen, Garrett Keating, John Lugten, Dave MacMahon, Oren Milgrome, Douglas Thornton, Lynn Urry, Joeri van Leeuwen, Dan Werthimer, Peter H. Williams, Melvin Wright, Jill Tarter, Robert Ackermann, Shannon Atkinson, Peter R. Backus, William Barott, Tucker Bradford, Michael Davis, David R. DeBoer, John Dreher, Gerry R. Harp, Jane Jordan, Tom Kilsdonk, Tom Pierson, Karen Randall, John Ross, G. Seth Shostak, Matt Fleming, Chris Cork, Artyom Vitouchkine, Niklas Wadefalk, Sander Weinreb:
The Allen Telescope Array: The First Widefield, Panchromatic, Snapshot Radio Camera for Radio Astronomy and SETI. Proc. IEEE 97(8): 1438-1447 (2009) - 2007
- Chris Metz, Colby Barth, Clarence Filsfils:
Beyond MPLS ... Less is More. IEEE Internet Comput. 11(5): 72-76 (2007) - Karim Abdel-Malek, Jingzhou Yang, Joo H. Kim, Timothy Marler, Steven Beck, Colby Swan, Laura A. Frey-Law, Anith Mathai, Chris Murphy, Salam Rahmatallah, Jasbir Arora:
Development of the Virtual-Human SantosTM. HCI (12) 2007: 490-499 - Colby Ranger, Ramanan Raghuraman, Arun Penmetsa, Gary R. Bradski, Christos Kozyrakis:
Evaluating MapReduce for Multi-core and Multiprocessor Systems. HPCA 2007: 13-24 - 2003
- Christopher Colby, Karl Crary, Robert Harper, Peter Lee, Frank Pfenning:
Automated techniques for provably safe mobile code. Theor. Comput. Sci. 290(2): 1175-1199 (2003) - 2002
- Jennifer Krueger, Denise Bedford, Merri Beth Lavagnino, Elizabeth Wu, Barbara McFadden Allen, Kimberly Parker, Christine Dufour, Pierrette Bergeron, Beverly Colby:
Wanted: Information specialist, manager, designer, analyst, architect. Sponsored by SIG MGT. ASIST 2002: 493-494 - 2000
- Thomas Ball, Christopher Colby, Peter J. Danielsen, Lalita Jategaonkar Jagadeesan, Radha Jagadeesan, Konstantin Läufer, Peter Mataga, Kenneth Rehor:
Sisl: Several Interfaces, Single Logic. Int. J. Speech Technol. 3(2): 93-108 (2000) - Christopher Colby, Peter Lee, George C. Necula:
A Proof-Carrying Code Architecture for Java. CAV 2000: 557-560 - Christopher Colby, Peter Lee, George C. Necula, Fred Blau, Mark Plesko, Kenneth Cline:
A certifying compiler for Java. PLDI 2000: 95-107
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