- Hong Huang, Hailiang Feng:
Gene Classification Using Parameter-Free Semi-Supervised Manifold Learning. IEEE ACM Trans. Comput. Biol. Bioinform. 9(3): 818-827 (2012) - Qinghua Huang, Dacheng Tao, Xuelong Li
, Alan Wee-Chung Liew
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Parallelized Evolutionary Learning for Detection of Biclusters in Gene Expression Data. IEEE ACM Trans. Comput. Biol. Bioinform. 9(2): 560-570 (2012) - Ozan Irsoy, Olcay Taner Yildiz
, Ethem Alpaydin
:
Design and Analysis of Classifier Learning Experiments in Bioinformatics: Survey and Case Studies. IEEE ACM Trans. Comput. Biol. Bioinform. 9(6): 1663-1675 (2012) - Neil Jacklin, Zhi Ding
, Wei Chen, Chunqi Chang
:
Noniterative Convex Optimization Methods for Network Component Analysis. IEEE ACM Trans. Comput. Biol. Bioinform. 9(5): 1472-1481 (2012) - Woo-Hyuk Jang, Suk Hoon Jung, Dong-Soo Han:
A Computational Model for Predicting Protein Interactions Based on Multidomain Collaboration. IEEE ACM Trans. Comput. Biol. Bioinform. 9(4): 1081-1090 (2012) - Peter D. Jarvis, Jeremy G. Sumner
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Markov Invariants for Phylogenetic Rate Matrices Derived from Embedded Submodels. IEEE ACM Trans. Comput. Biol. Bioinform. 9(3): 828-836 (2012) - Jonathan Q. Jiang, Lisa J. McQuay
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Predicting Protein Function by Multi-Label Correlated Semi-Supervised Learning. IEEE ACM Trans. Comput. Biol. Bioinform. 9(4): 1059-1069 (2012) - Haitao Jiang, Chunfang Zheng, David Sankoff, Binhai Zhu:
Scaffold Filling under the Breakpoint and Related Distances. IEEE ACM Trans. Comput. Biol. Bioinform. 9(4): 1220-1229 (2012) - Shaini Joseph, Shreyas Karnik, Pravin Nilawe, Vaidyanathan K. Jayaraman, Susan Idicula-Thomas:
ClassAMP: A Prediction Tool for Classification of Antimicrobial Peptides. IEEE ACM Trans. Comput. Biol. Bioinform. 9(5): 1535-1538 (2012) - Uday Kamath, Jack Compton, Rezarta Islamaj Dogan
, Kenneth A. De Jong, Amarda Shehu
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An Evolutionary Algorithm Approach for Feature Generation from Sequence Data and Its Application to DNA Splice Site Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 9(5): 1387-1398 (2012) - Bilge Karaçali
:
Hierarchical Motif Vectors for Prediction of Functional Sites in Amino Acid Sequences Using Quasi-Supervised Learning. IEEE ACM Trans. Comput. Biol. Bioinform. 9(5): 1432-1441 (2012) - Ioannis Karafyllidis
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Quantum Gate Circuit Model of Signal Integration in Bacterial Quorum Sensing. IEEE ACM Trans. Comput. Biol. Bioinform. 9(2): 571-579 (2012) - Shuichi Kawano
, Teppei Shimamura
, Atsushi Niida, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki
, Ryo Yoshida, Cristin G. Print
, Satoru Miyano
:
Identifying Gene Pathways Associated with Cancer Characteristics via Sparse Statistical Methods. IEEE ACM Trans. Comput. Biol. Bioinform. 9(4): 966-972 (2012) - Nabila Kazmi, M. Alamgir Hossain, Roger M. Phillips
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A Hybrid Cellular Automaton Model of Solid Tumor Growth and Bioreductive Drug Transport. IEEE ACM Trans. Comput. Biol. Bioinform. 9(6): 1595-1606 (2012) - Steven Kelk, Céline Scornavacca, Leo van Iersel:
On the Elusiveness of Clusters. IEEE ACM Trans. Comput. Biol. Bioinform. 9(2): 517-534 (2012) - Kyriakos Kentzoglanakis, Matthew Poole
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A Swarm Intelligence Framework for Reconstructing Gene Networks: Searching for Biologically Plausible Architectures. IEEE ACM Trans. Comput. Biol. Bioinform. 9(2): 358-371 (2012) - Haseong Kim, Erol Gelenbe
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Stochastic Gene Expression Modeling with Hill Function for Switch-Like Gene Responses. IEEE ACM Trans. Comput. Biol. Bioinform. 9(4): 973-979 (2012) - Hannes Klarner, Heike Siebert, Alexander Bockmayr
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Time Series Dependent Analysis of Unparametrized Thomas Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 9(5): 1338-1351 (2012) - Petros Kountouris
, Michalis Agathocleous, Vasilis J. Promponas
, Georgia Christodoulou, Simos Hadjicostas, Vassilis Vassiliades
, Chris Christodoulou
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A Comparative Study on Filtering Protein Secondary Structure Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 9(3): 731-739 (2012) - Milos Krejnik, Jirí Kléma
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Empirical Evidence of the Applicability of Functional Clustering through Gene Expression Classification. IEEE ACM Trans. Comput. Biol. Bioinform. 9(3): 788-798 (2012) - M. Oguzhan Külekci
, Jeffrey Scott Vitter
, Bojian Xu:
Efficient Maximal Repeat Finding Using the Burrows-Wheeler Transform and Wavelet Tree. IEEE ACM Trans. Comput. Biol. Bioinform. 9(2): 421-429 (2012) - Shanika Kuruppu, Bryan Beresford-Smith, Thomas C. Conway, Justin Zobel:
Iterative Dictionary Construction for Compression of Large DNA Data Sets. IEEE ACM Trans. Comput. Biol. Bioinform. 9(1): 137-149 (2012) - Cosmin Lazar, Jonatan Taminau, Stijn Meganck, David Steenhoff, Alain Coletta, Colin Molter, Virginie de Schaetzen, Robin Duque, Hugues Bersini, Ann Nowé:
A Survey on Filter Techniques for Feature Selection in Gene Expression Microarray Analysis. IEEE ACM Trans. Comput. Biol. Bioinform. 9(4): 1106-1119 (2012) - Shuai Cheng Li
, Dongbo Bu, Ming Li:
Residues with Similar Hexagon Neighborhoods Share Similar Side-Chain Conformations. IEEE ACM Trans. Comput. Biol. Bioinform. 9(1): 240-248 (2012) - Shuai Cheng Li
, Dongbo Bu, Ming Li:
Clustering 100, 000 Protein Structure Decoys in Minutes. IEEE ACM Trans. Comput. Biol. Bioinform. 9(3): 765-773 (2012) - Ying-Xin Li, Shuiwang Ji
, Sudhir Kumar
, Jieping Ye, Zhi-Hua Zhou:
Drosophila Gene Expression Pattern Annotation through Multi-Instance Multi-Label Learning. IEEE ACM Trans. Comput. Biol. Bioinform. 9(1): 98-112 (2012) - Bo Liao, Xiong Li, Wen Zhu, Zhi Cao:
A Novel Method to Select Informative SNPs and Their Application in Genetic Association Studies. IEEE ACM Trans. Comput. Biol. Bioinform. 9(5): 1529-1534 (2012) - Yu Lin
, Vaibhav Rajan
, Bernard M. E. Moret
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A Metric for Phylogenetic Trees Based on Matching. IEEE ACM Trans. Comput. Biol. Bioinform. 9(4): 1014-1022 (2012) - Li-Zhi Liu, Fang-Xiang Wu
, Wen-Jun Zhang
:
Inference of Biological S-System Using the Separable Estimation Method and the Genetic Algorithm. IEEE ACM Trans. Comput. Biol. Bioinform. 9(4): 955-965 (2012) - Xin Ma, Jing Guo, Hongde Liu, Jianming Xie, Xiao Sun:
Sequence-Based Prediction of DNA-Binding Residues in Proteins with Conservation and Correlation Information. IEEE ACM Trans. Comput. Biol. Bioinform. 9(6): 1766-1775 (2012)