- Takako Takai-Igarashi:
Ontology Based Standardization of Petri Net Modeling for Signaling Pathways. Silico Biol. 5(5-6): 529-536 (2005) - Juan Carlos Ulloa, Adriana Matiz, Leonardo Lareo, Maria Fernanda Gutiérrez:
Molecular Analysis of A 348 Base-Pair Segment of Open Reading Frame 2 of Human Astrovirus. A Characterization of Colombian Isolates. Silico Biol. 5(5-6): 537-546 (2005) - Matthias Wolf, Joachim Friedrich, Thomas Dandekar, Tobias Müller:
CBCAnalyzer: inferring phylogenies based on compensatory base changes in RNA secondary structures. Silico Biol. 5(3): 291-294 (2005) - 2004
- Ljudmilla Borisjuk, Mohammad-Reza Hajirezaei, Christian Klukas, Hardy Rolletschek, Falk Schreiber:
Integrating data from biological experiments into metabolic networks with the DBE information system. Silico Biol. 5(2): 93-102 (2004) - Gordon Broderick, Melania Rúaini, Eugene Chan, Michael J. Ellison:
A life-like virtual cell membrane using discrete automata. Silico Biol. 5(2): 163-178 (2004) - Michal Brylinski, Leszek Konieczny, Irena Roterman:
SPI - Structure predictability index for protein sequences. Silico Biol. 5(3): 227-237 (2004) - Ming Chen, Ralf Hofestädt:
An algorithm for linear metabolic pathway alignment. Silico Biol. 5(2): 111-128 (2004) - Thomas Dandekar, Steffen Schmidt:
Metabolites, pathway flexibility. Silico Biol. 5(2): 103-110 (2004) - Matteo Fattore, Patrizio Arrigo:
Knowledge Discovery and System Biology in molecular medicine: an application to neurodegenerative diseases. Silico Biol. 5(2): 199-208 (2004) - Marylens Hernández Guía, Abel González Pérez, Vladimir Espinosa Angarica, Ana Tereza Ribeiro de Vasconcelos, Julio Collado-Vides:
Complementing computationally predicted regulatory sites in Tractor_DB using a pattern matching approach. Silico Biol. 5(2): 209-219 (2004) - Ralf Hofestädt:
Preface - Dagstuhl Seminar on Integrative Bioinformatics. Silico Biol. 5(2): 81-82 (2004) - Ina Koch, Markus Schüler, Monika Heiner:
STEPP - Search Tool for Exploration of Petri net Paths: A new tool for Petri net-based path analysis in biochemical networks. Silico Biol. 5(2): 129-137 (2004) - Jacob Köhler, Christopher J. Rawlings, Paul Verrier, Rowan A. C. Mitchell, Andre Skusa, Alexander Rüegg, Stephan Philippi:
Linking experimental results, biological networks and sequence analysis methods using Ontologies and Generalized Data Structures. Silico Biol. 5(1): 33-44 (2004) - Asako Koike, Toshihisa Takagi:
PRIME: automatically extracted PRotein Interactions and Molecular Information databas. Silico Biol. 5(1): 9-20 (2004) - Vivian Lee, Evelyn Camon, Emily Dimmer, Daniel Barrell, Rolf Apweiler:
GOA? - Use of Gene Ontology Annotation (GOA) for biological interpretation of '-omics' data and for validation of automatic annotation tools. Silico Biol. 5(1): 5-8 (2004) - Marie-Paule Lefranc, Oliver Clément, Quentin Kaas, Elodie Duprat, Patrick Chastellan, Isabelle Coelho, Kora Combres, Chantal Ginestoux, Véronique Giudicelli, Denys Chaume, Gérard Lefranc:
IMGT-Choreography for immunogenetics and immunoinformatics. Silico Biol. 5(1): 45-60 (2004) - Holger Michael, Xin Chen, Ellen Fricke, Martin Haubrock, Remko Ricanek, Edgar Wingender:
Deriving an ontology for human gene expression sources from the CYTOMER? database on human organs and cell types. Silico Biol. 5(1): 61-66 (2004) - Manuela Pruess, Paul J. Kersey, Rolf Apweiler:
The Integr8 project - a resource for genomic and proteomic data. Silico Biol. 5(2): 179-185 (2004) - Meena K. Sakharkar, Bagavathi S. Perumal, Yun Ping Lim, Lee Pern Chern, Yiting Yu, Pandjassarame Kangueane:
Alternatively Spliced Human Genes by Exon Skipping - a database. Silico Biol. 5(3): 221-225 (2004) - Jasmin Saric, Lars Juhl Jensen, Isabel Rojas:
Large-scale extraction of gene regulation for model organisms in an ontological context. Silico Biol. 5(1): 21-32 (2004) - Kenji Satou, Kaoru Yamamoto:
Utilizing weakly controlled vocabulary for sentence segmentation in biomedical literature. Silico Biol. 5(1): 67-79 (2004) - Takako Takai-Igarashi, Toshihisa Takagi, Holger Michael, Edgar Wingender:
Preface - Third "Ontology Workshop on Ontology and Genomes". Silico Biol. 5(1): 1-3 (2004) - Andrei L. Turinsky, Andrew C. Ah-Seng, Paul M. K. Gordon, Julie N. Stromer, Morgan L. Taschuk, Emily W. Xu, Christoph W. Sensen:
Bioinformatics visualization and integration with open standards: the Bluejay genomic browser. Silico Biol. 5(2): 187-198 (2004) - Eberhard O. Voit, Simeone Marino, Raman Lall:
Challenges for the identification of biological systems from in vivo time series data. Silico Biol. 5(2): 83-92 (2004) - David S. Wishart, Robert Yang, David Arndt, Peter Tang, Joseph A. Cruz:
Dynamic cellular automata: a simple but powerful approach to cellular simulation. Silico Biol. 5(2): 139-161 (2004)