- Ghazaleh Haratinezhad Torbati
, Gerhard Weikum
, Andrew Yates
:
Search-based Recommendation: the Case for Difficult Predictions. WWW (Companion Volume) 2023: 318-321 - Thong Nguyen, Sean MacAvaney, Andrew Yates:
A Unified Framework for Learned Sparse Retrieval. CoRR abs/2303.13416 (2023) - Vaishali Pal, Andrew Yates, Evangelos Kanoulas, Maarten de Rijke:
MultiTabQA: Generating Tabular Answers for Multi-Table Question Answering. CoRR abs/2305.12820 (2023) - Thong Nguyen, Sean MacAvaney, Andrew Yates:
Adapting Learned Sparse Retrieval for Long Documents. CoRR abs/2305.18494 (2023) - Yibin Lei, Liang Ding, Yu Cao, Changtong Zan, Andrew Yates, Dacheng Tao:
Unsupervised Dense Retrieval with Relevance-Aware Contrastive Pre-Training. CoRR abs/2306.03166 (2023) - Thong Nguyen, Andrew Yates:
Generative Retrieval as Dense Retrieval. CoRR abs/2306.11397 (2023) - Ming Li, Mozhdeh Ariannezhad, Andrew Yates, Maarten de Rijke:
Masked and Swapped Sequence Modeling for Next Novel Basket Recommendation in Grocery Shopping. CoRR abs/2308.01308 (2023) - Michael Unterkalmsteiner, Andrew Yates:
Expert-sourcing Domain-specific Knowledge: The Case of Synonym Validation. CoRR abs/2309.16798 (2023) - Andrew Yates, Michael Unterkalmsteiner:
Replicating Relevance-Ranked Synonym Discovery in a New Language and Domain. CoRR abs/2310.01507 (2023) - Ghazaleh Haratinezhad Torbati, Anna Tigunova, Andrew Yates, Gerhard Weikum:
Recommendations by Concise User Profiles from Review Text. CoRR abs/2311.01314 (2023) - 2022
- Xiongnan Jin
, Yooyoung Lee, Jonathan G. Fiscus, Haiying Guan, Amy N. Yates
, Andrew Delgado, Daniel Zhou:
MFC-Prov: Media forensics challenge image provenance evaluation and data analysis on large-scale datasets. Neurocomputing 470: 76-88 (2022) - Shahrzad Naseri
, Jeffrey Dalton, Andrew Yates, James Allan:
CEQE to SQET: A study of contextualized embeddings for query expansion. Inf. Retr. J. 25(2): 184-208 (2022) - Gregory E. Simon, Susan M. Shortreed, Jennifer M. Boggs, Gregory N. Clarke, Rebecca C. Rossom
, Julie E. Richards, Arne Beck, Brian K. Ahmedani, Karen J. Coleman, Bhumi Bhakta, Christine C. Stewart, Stacy Sterling, Michael Schoenbaum, R. Yates Coley, Marc Stone, Andrew D. Mosholder, Zimri S. Yaseen
:
Accuracy of ICD-10-CM encounter diagnoses from health records for identifying self-harm events. J. Am. Medical Informatics Assoc. 29(12): 2023-2031 (2022) - Fiona Cunningham
, James E. Allen, Jamie Allen
, Jorge Álvarez-Jarreta, M. Ridwan Amode, Irina M. Armean
, Olanrewaju Austine-Orimoloye, Andrey G. Azov
, If Barnes, Ruth Bennett
, Andrew E. Berry, Jyothish Bhai
, Alexandra Bignell, Konstantinos Billis
, Sanjay Boddu
, Lucy Brooks
, Mehrnaz Charkhchi, Carla A. Cummins
, Luca Da Rin Fioretto, Claire Davidson
, Kamalkumar Jayantilal Dodiya, Sarah M. Donaldson
, Bilal El Houdaigui
, Tamara El Naboulsi, Reham Fatima, Carlos García-Girón
, Thiago A. L. Genez, Jose Gonzalez Martinez
, Cristina Guijarro-Clarke
, Arthur Gymer, Matthew Hardy
, Zoe Hollis
, Thibaut Hourlier
, Toby Hunt
, Thomas Juettemann
, Vinay Kaikala, Mike P. Kay
, Ilias Lavidas
, Tuan Le, Diana Lemos
, José Carlos Marugán
, Shamika Mohanan
, Aleena Mushtaq, Marc Naven, Denye N. Oheh, Anne Parker, Andrew Parton, Malcolm Perry
, Ivana Pilizota
, Irina Prosovetskaia, Manoj Pandian Sakthivel, Ahamed Imran Abdul Salam, Bianca M. Schmitt
, Helen Schuilenburg
, Dan Sheppard, José G. Pérez-Silva
, William Stark
, Emily Steed
, Kyösti Sutinen, Ranjit Sukumaran, Dulika Sumathipala
, Marie-Marthe Suner
, Michal Szpak
, Anja Thormann, Francesca Floriana Tricomi
, David Urbina-Gómez
, Andres Veidenberg
, Thomas A. Walsh
, Brandon Walts
, Natalie L. Willhoft
, Andrea Winterbottom
, Elizabeth Wass
, Marc Chakiachvili
, Bethany Flint
, Adam Frankish
, Stefano Giorgetti, Leanne Haggerty
, Sarah E. Hunt
, Garth IIsley
, Jane E. Loveland
, Fergal J. Martin
, Benjamin Moore
, Jonathan M. Mudge
, Matthieu Muffato
, Emily Perry
, Magali Ruffier
, John G. Tate, David Thybert, Stephen J. Trevanion
, Sarah Dyer
, Peter W. Harrison
, Kevin L. Howe
, Andrew D. Yates
, Daniel R. Zerbino
, Paul Flicek
:
Ensembl 2022. Nucleic Acids Res. 50(D1): 988-995 (2022) - Nishadi De Silva
, Jyothish Bhai
, Marc Chakiachvili
, Bruno Contreras-Moreira
, Carla A. Cummins, Adam Frankish
, Astrid Gall
, Thiago Augusto Lopes Genez, Kevin L. Howe
, Sarah E. Hunt
, Fergal J. Martin
, Benjamin Moore
, Denye N. Oheh, Anne Parker, Andrew Parton, Magali Ruffier
, Manoj Pandian Sakthivel, Dan Sheppard, John G. Tate, Anja Thormann, David Thybert, Stephen J. Trevanion
, Andrea Winterbottom
, Daniel R. Zerbino
, Robert D. Finn
, Paul Flicek
, Andrew D. Yates
:
The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data. Nucleic Acids Res. 50(D1): 765-770 (2022) - Martin Urban
, Alayne Cuzick
, James Seager
, Valerie Wood
, Kim Rutherford
, Shilpa Yagwakote Venkatesh, Jashobanta Sahu, S. Vijaylakshmi Iyer, Lokanath Khamari, Nishadi De Silva
, Manuel Carbajo Martinez
, Helder Pedro
, Andrew D. Yates
, Kim E. Hammond-Kosack
:
PHI-base in 2022: a multi-species phenotype database for Pathogen-Host Interactions. Nucleic Acids Res. 50(D1): 837-847 (2022) - Andrew D. Yates
, James E. Allen, M. Ridwan Amode, Andrey G. Azov
, Matthieu Barba
, Andrés Becerra
, Jyothish Bhai
, Lahcen I. Campbell
, Manuel Carbajo Martinez
, Marc Chakiachvili
, Kapeel Chougule, Mikkel B. Christensen
, Bruno Contreras-Moreira
, Alayne Cuzick
, Luca Da Rin Fioretto, Paul Davis
, Nishadi De Silva
, Stavros Diamantakis
, Sarah Dyer
, Justin Elser, Carla V. Filippi, Astrid Gall
, Dionysios Grigoriadis
, Cristina Guijarro-Clarke
, Parul Gupta, Kim E. Hammond-Kosack
, Kevin L. Howe
, Pankaj Jaiswal
, Vinay Kaikala, Vivek Kumar, Sunita Kumari, Nick Langridge, Tuan Le, Manuel Luypaert
, Gareth Maslen, Thomas Maurel
, Benjamin Moore
, Matthieu Muffato
, Aleena Mushtaq, Guy Naamati
, Sushma Naithani
, Andrew Olson, Anne Parker, Michael Paulini, Helder Pedro, Emily Perry
, Justin Preece, Mark Quinton-Tulloch
, Faye Rodgers, Marc Rosello, Magali Ruffier
, James Seager
, Vasily Sitnik, Michal Szpak
, John G. Tate, Marcela K. Tello-Ruiz, Stephen J. Trevanion
, Martin Urban
, Doreen Ware, Sharon Wei, Gary Williams, Andrea Winterbottom
, Magdalena Zarowiecki
, Robert D. Finn
, Paul Flicek
:
Ensembl Genomes 2022: an expanding genome resource for non-vertebrates. Nucleic Acids Res. 50(D1): 996-1003 (2022) - Thong Nguyen, Andrew Yates, Ayah Zirikly, Bart Desmet, Arman Cohan:
Improving the Generalizability of Depression Detection by Leveraging Clinical Questionnaires. ACL (1) 2022: 8446-8459 - Hai Dang Tran, Andrew Yates:
Dense Retrieval with Entity Views. CIKM 2022: 1955-1964 - Ronak Pradeep, Yuqi Liu, Xinyu Zhang, Yilin Li, Andrew Yates, Jimmy Lin:
Squeezing Water from a Stone: A Bag of Tricks for Further Improving Cross-Encoder Effectiveness for Reranking. ECIR (1) 2022: 655-670 - Antonios Minas Krasakis
, Andrew Yates, Evangelos Kanoulas
:
Zero-shot Query Contextualization for Conversational Search. SIGIR 2022: 1880-1884 - Pooya Khandel, Ilya Markov, Andrew Yates, Ana Lucia Varbanescu:
ParClick: A Scalable Algorithm for EM-based Click Models. WWW 2022: 392-400 - Thong Nguyen, Andrew Yates, Ayah Zirikly, Bart Desmet, Arman Cohan:
Improving the Generalizability of Depression Detection by Leveraging Clinical Questionnaires. CoRR abs/2204.10432 (2022) - Antonios Minas Krasakis, Andrew Yates, Evangelos Kanoulas
:
Zero-shot Query Contextualization for Conversational Search. CoRR abs/2204.10613 (2022) - Maurits J. R. Bleeker, Andrew Yates, Maarten de Rijke:
Keep the Caption Information: Preventing Shortcut Learning in Contrastive Image-Caption Retrieval. CoRR abs/2204.13382 (2022) - 2021
- Jimmy Lin, Rodrigo Frassetto Nogueira
, Andrew Yates:
Pretrained Transformers for Text Ranking: BERT and Beyond. Synthesis Lectures on Human Language Technologies, Morgan & Claypool Publishers 2021, ISBN 978-3-031-01053-8, pp. 1-325 - Andrew D. Yates
, Jeremy Adams
, Somesh Chaturvedi, Robert Davies, Matthew R. Laird, Rasko Leinonen
, Rishi Nag, Nathan C. Sheffield, Oliver Hofmann
, Thomas M. Keane
:
Refget: standardized access to reference sequences. Bioinform. 38(1): 299-300 (2021) - Zhi Zheng
, Kai Hui, Ben He, Xianpei Han
, Le Sun
, Andrew Yates
:
Contextualized query expansion via unsupervised chunk selection for text retrieval. Inf. Process. Manag. 58(5): 102672 (2021) - Adam Frankish
, Mark Diekhans
, Irwin Jungreis
, Julien Lagarde
, Jane E. Loveland
, Jonathan M. Mudge
, Cristina Sisu
, James C. Wright
, Joel Armstrong, If Barnes, Andrew E. Berry
, Alexandra Bignell
, Carles Boix, Silvia Carbonell Sala, Fiona Cunningham
, Tomás Di Domenico, Sarah M. Donaldson
, Ian T. Fiddes, Carlos García-Girón
, Jose M. Gonzalez, Tiago Grego
, Matthew Hardy
, Thibaut Hourlier
, Kevin L. Howe
, Toby Hunt
, Osagie G. Izuogu
, Rory Johnson
, Fergal J. Martin
, Laura Martínez
, Shamika Mohanan
, Paul Muir, Fabio C. P. Navarro, Anne Parker, Baikang Pei, Fernando Pozo
, Ferriol Calvet Riera
, Magali Ruffier
, Bianca M. Schmitt
, Eloise Stapleton, Marie-Marthe Suner
, Irina Sycheva, Barbara Uszczynska-Ratajczak, Maxim Y. Wolf, Jinrui Xu
, Yucheng T. Yang
, Andrew D. Yates
, Daniel R. Zerbino
, Yan Zhang
, Jyoti Choudhary
, Mark Gerstein, Roderic Guigó, Tim J. P. Hubbard, Manolis Kellis, Benedict Paten, Michael L. Tress
, Paul Flicek
:
GENCODE 2021. Nucleic Acids Res. 49(Database-Issue): D916-D923 (2021) - Kevin L. Howe
, Premanand Achuthan, James E. Allen, Jamie Allen, Jorge Álvarez-Jarreta, M. Ridwan Amode, Irina M. Armean, Andrey G. Azov, Ruth Bennett, Jyothish Bhai, Konstantinos Billis, Sanjay Boddu, Mehrnaz Charkhchi, Carla A. Cummins, Luca Da Rin Fioretto, Claire Davidson, Kamalkumar Jayantilal Dodiya, Bilal El Houdaigui, Reham Fatima, Astrid Gall, Carlos García-Girón, Tiago Grego, Cristina Guijarro-Clarke, Leanne Haggerty, Anmol Hemrom, Thibaut Hourlier, Osagie G. Izuogu, Thomas Juettemann, Vinay Kaikala, Mike P. Kay, Ilias Lavidas, Tuan Le, Diana Lemos, Jose Gonzalez Martinez, José Carlos Marugán, Thomas Maurel, Aoife C. McMahon, Shamika Mohanan, Benjamin Moore, Matthieu Muffato, Denye N. Oheh, Dimitrios Paraschas, Anne Parker, Andrew Parton, Irina Prosovetskaia, Manoj Pandian Sakthivel, Ahamed Imran Abdul Salam, Bianca M. Schmitt, Helen Schuilenburg, Dan Sheppard, Emily Steed, Michal Szpak, Marek Szuba, Kieron R. Taylor, Anja Thormann, Glen Threadgold, Brandon Walts, Andrea Winterbottom, Marc Chakiachvili, Ameya Chaubal, Nishadi De Silva, Bethany Flint, Adam Frankish
, Sarah E. Hunt, Garth IIsley, Nick Langridge, Jane E. Loveland
, Fergal J. Martin, Jonathan M. Mudge, Joannella Morales, Emily Perry, Magali Ruffier, John G. Tate, David Thybert, Stephen J. Trevanion, Fiona Cunningham, Andrew D. Yates
, Daniel R. Zerbino, Paul Flicek
:
Ensembl 2021. Nucleic Acids Res. 49(Database-Issue): D884-D891 (2021)