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2020 – today
- 2022
[j20]Luis García-Jimeno, Coral Fustero Torre
, María José Jiménez-Santos, Gonzalo Gómez-López, Tomás Di Domenico, Fátima Al-Shahrour:
bollito: a flexible pipeline for comprehensive single-cell RNA-seq analyses. Bioinform. 38(4): 1155-1156 (2022)- [j19]Jose Manuel Rodriguez, Fernando Pozo, Daniel Cerdán-Vélez, Tomás Di Domenico, Jesús Vázquez, Michael L. Tress:
APPRIS: selecting functionally important isoforms. Nucleic Acids Res. 50(D1): 54-59 (2022) - 2021
- [j18]Adam Frankish, Mark Diekhans, Irwin Jungreis, Julien Lagarde, Jane E. Loveland, Jonathan M. Mudge, Cristina Sisu, James C. Wright, Joel Armstrong, If Barnes, Andrew E. Berry, Alexandra Bignell, Carles Boix, Silvia Carbonell Sala, Fiona Cunningham, Tomás Di Domenico, Sarah M. Donaldson, Ian T. Fiddes, Carlos García-Girón, Jose M. Gonzalez, Tiago Grego, Matthew Hardy, Thibaut Hourlier, Kevin L. Howe, Toby Hunt, Osagie G. Izuogu, Rory Johnson, Fergal J. Martin, Laura Martínez, Shamika Mohanan, Paul Muir, Fabio C. P. Navarro, Anne Parker, Baikang Pei, Fernando Pozo, Ferriol Calvet Riera, Magali Ruffier, Bianca M. Schmitt, Eloise Stapleton, Marie-Marthe Suner, Irina Sycheva, Barbara Uszczynska-Ratajczak, Maxim Y. Wolf, Jinrui Xu, Yucheng T. Yang, Andrew D. Yates, Daniel R. Zerbino, Yan Zhang, Jyoti Choudhary, Mark Gerstein, Roderic Guigó, Tim J. P. Hubbard, Manolis Kellis, Benedict Paten, Michael L. Tress, Paul Flicek:
GENCODE 2021. Nucleic Acids Res. 49(Database-Issue): D916-D923 (2021) - 2020
- [j17]Jose Manuel Rodriguez, Fernando Pozo, Tomás Di Domenico, Jesús Vázquez, Michael L. Tress:
An analysis of tissue-specific alternative splicing at the protein level. PLoS Comput. Biol. 16(10) (2020)
2010 – 2019
- 2019
- [j16]Javier Perales-Patón, Tomás Di Domenico, Coral Fustero Torre, Elena Piñeiro-Yáñez, Carlos Carretero-Puche, Héctor Tejero, Alfonso Valencia, Gonzalo Gómez-López, Fátima Al-Shahrour:
vulcanSpot: a tool to prioritize therapeutic vulnerabilities in cancer. Bioinform. 35(22): 4846-4848 (2019) - [j15]Adam Frankish, Mark Diekhans, Anne-Maud Ferreira, Rory Johnson, Irwin Jungreis, Jane E. Loveland, Jonathan M. Mudge, Cristina Sisu, James C. Wright, Joel Armstrong, If Barnes, Andrew E. Berry, Alexandra Bignell, Silvia Carbonell Sala, Jacqueline Chrast, Fiona Cunningham, Tomás Di Domenico, Sarah M. Donaldson, Ian T. Fiddes, Carlos García-Girón, Jose M. Gonzalez, Tiago Grego, Matthew Hardy, Thibaut Hourlier, Toby Hunt, Osagie G. Izuogu, Julien Lagarde, Fergal J. Martin, Laura Martínez, Shamika Mohanan, Paul Muir, Fabio C. P. Navarro, Anne Parker, Baikang Pei, Fernando Pozo, Magali Ruffier, Bianca M. Schmitt, Eloise Stapleton, Marie-Marthe Suner, Irina Sycheva, Barbara Uszczynska-Ratajczak, Jinrui Xu, Andrew D. Yates, Daniel R. Zerbino, Yan Zhang, Bronwen L. Aken, Jyoti Choudhary, Mark Gerstein, Roderic Guigó, Tim J. P. Hubbard, Manolis Kellis, Benedict Paten, Alexandre Reymond, Michael L. Tress, Paul Flicek:
GENCODE reference annotation for the human and mouse genomes. Nucleic Acids Res. 47(Database-Issue): D766-D773 (2019) - 2018
- [j14]Jose Manuel Rodriguez, Juan Rodriguez-Rivas, Tomás Di Domenico, Jesús Vázquez, Alfonso Valencia, Michael L. Tress:
APPRIS 2017: principal isoforms for multiple gene sets. Nucleic Acids Res. 46(Database-Issue): D213-D217 (2018) - 2015
- [j13]Ian Walsh, Manuel Giollo, Tomás Di Domenico, Carlo Ferrari, Olav Zimmermann, Silvio C. E. Tosatto:
Comprehensive large-scale assessment of intrinsic protein disorder. Bioinform. 31(2): 201-208 (2015) - [j12]Farzana Rahman, Katie Wilkins, Annika Jacobsen, Alexander Junge, Esmeralda Vicedo, Dan F. DeBlasio, Anupama Jigisha, Tomás Di Domenico:
Highlights from the tenth ISCB Student Council Symposium 2014. BMC Bioinform. 16(S-2): A1 (2015) - [j11]Emilio Potenza, Tomás Di Domenico, Ian Walsh, Silvio C. E. Tosatto:
MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins. Nucleic Acids Res. 43(Database-Issue): 315-320 (2015) - 2014
- [j10]Tomás Di Domenico, Cynthia Prudence, Esmeralda Vicedo, Emre Guney, Anupama Jigisha, Avinash Kumar Shanmugam:
Highlights from the ISCB Student Council Symposium 2013. BMC Bioinform. 15(S-3): A1 (2014) - [j9]Tomás Di Domenico, Emilio Potenza, Ian Walsh, R. Gonzalo Parra, Manuel Giollo, Giovanni Minervini, Damiano Piovesan, Awais Ihsan, Carlo Ferrari, Andrey V. Kajava, Silvio C. E. Tosatto:
RepeatsDB: a database of tandem repeat protein structures. Nucleic Acids Res. 42(Database-Issue): 352-357 (2014) - 2013
- [j8]Tomás Di Domenico, Ian Walsh, Silvio C. E. Tosatto:
Analysis and consensus of currently available intrinsic protein disorder annotation sources in the MobiDB database. BMC Bioinform. 14(S-7): S3 (2013) - [j7]Alex Bateman, Janet Kelso, Daniel Mietchen, Geoff MacIntyre, Tomás Di Domenico, Thomas Abeel, Darren W. Logan, Predrag Radivojac, Burkhard Rost:
ISCB Computational Biology Wikipedia Competition. PLoS Comput. Biol. 9(9) (2013) - 2012
- [j6]Ian Walsh, Alberto J. M. Martin, Tomás Di Domenico, Silvio C. E. Tosatto:
ESpritz: accurate and fast prediction of protein disorder. Bioinform. 28(4): 503-509 (2012) - [j5]Tomás Di Domenico, Ian Walsh, Alberto J. M. Martin, Silvio C. E. Tosatto:
MobiDB: a comprehensive database of intrinsic protein disorder annotations. Bioinform. 28(15): 2080-2081 (2012) - [j4]Ian Walsh, Francesco Sirocco, Giovanni Minervini, Tomás Di Domenico, Carlo Ferrari, Silvio C. E. Tosatto:
RAPHAEL: recognition, periodicity and insertion assignment of solenoid protein structures. Bioinform. 28(24): 3257-3264 (2012) - 2011
- [j3]Alberto J. M. Martin, Michele Vidotto, Filippo Boscariol, Tomás Di Domenico, Ian Walsh, Silvio C. E. Tosatto:
RING: networking interacting residues, evolutionary information and energetics in protein structures. Bioinform. 27(14): 2003-2005 (2011) - [j2]Ian Walsh, Alberto J. M. Martin, Tomás Di Domenico, Alessandro Vullo, Gianluca Pollastri, Silvio C. E. Tosatto:
CSpritz: accurate prediction of protein disorder segments with annotation for homology, secondary structure and linear motifs. Nucleic Acids Res. 39(Web-Server-Issue): 190-196 (2011) - 2010
- [j1]Cristina Marino Buslje, Elin Teppa, Tomás Di Domenico, José María Delfino, Morten Nielsen:
Networks of High Mutual Information Define the Structural Proximity of Catalytic Sites: Implications for Catalytic Residue Identification. PLoS Comput. Biol. 6(11) (2010)
Coauthor Index
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