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@article{DBLP:journals/bmcbi/VermaRM24,
author = {Ghanshyam Verma and
Dietrich Rebholz{-}Schuhmann and
Michael G. Madden},
title = {Enabling personalised disease diagnosis by combining a patient's time-specific
gene expression profile with a biomedical knowledge base},
journal = {{BMC} Bioinform.},
volume = {25},
number = {1},
pages = {62},
year = {2024},
url = {https://doi.org/10.1186/s12859-024-05674-0},
doi = {10.1186/S12859-024-05674-0},
timestamp = {Tue, 20 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VermaRM24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/0027Y24,
author = {Chen Li and
Yoshihiro Yamanishi},
editor = {Michael J. Wooldridge and
Jennifer G. Dy and
Sriraam Natarajan},
title = {GxVAEs: Two Joint VAEs Generate Hit Molecules from Gene Expression
Profiles},
booktitle = {Thirty-Eighth {AAAI} Conference on Artificial Intelligence, {AAAI}
2024, Thirty-Sixth Conference on Innovative Applications of Artificial
Intelligence, {IAAI} 2024, Fourteenth Symposium on Educational Advances
in Artificial Intelligence, {EAAI} 2014, February 20-27, 2024, Vancouver,
Canada},
pages = {13455--13463},
publisher = {{AAAI} Press},
year = {2024},
url = {https://doi.org/10.1609/aaai.v38i12.29248},
doi = {10.1609/AAAI.V38I12.29248},
timestamp = {Tue, 02 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/aaai/0027Y24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bildmed/MonroyREOBVBM24,
author = {Luis Carlos Rivera Monroy and
Leonhard Rist and
Martin Eberhardt and
Christian Ostalecki and
Andreas Bauer and
Julio Vera and
Katharina Breininger and
Andreas K. Maier},
editor = {Andreas Maier and
Thomas M. Deserno and
Heinz Handels and
Klaus H. Maier{-}Hein and
Christoph Palm and
Thomas Tolxdorff},
title = {Comparative Analysis of Radiomic Features and Gene Expression Profiles
in Histopathology Data using Graph Neural Networks},
booktitle = {Bildverarbeitung f{\"{u}}r die Medizin 2024 - Proceedings, German
Conference on Medical Image Computing, Erlangen, March 10-12, 2024},
series = {Informatik Aktuell},
pages = {160--165},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-3-658-44037-4\_49},
doi = {10.1007/978-3-658-44037-4\_49},
timestamp = {Mon, 26 Feb 2024 10:39:04 +0100},
biburl = {https://dblp.org/rec/conf/bildmed/MonroyREOBVBM24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/aarc/MikhailovKSK23,
author = {Alexei M. Mikhailov and
Mikhail F. Karavai and
Vladimir A. Sivtsov and
Maria A. Kurnikova},
title = {Machine Learning for Diagnosis of Diseases with Complete Gene Expression
Profile},
journal = {Autom. Remote. Control.},
volume = {84},
number = {7},
pages = {727--733},
year = {2023},
url = {https://doi.org/10.1134/S0005117923070093},
doi = {10.1134/S0005117923070093},
timestamp = {Sat, 07 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/aarc/MikhailovKSK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/SebastianRK23,
author = {Softya Sebastian and
Swarup Roy and
Jugal Kalita},
title = {A generic parallel framework for inferring large-scale gene regulatory
networks from expression profiles: application to Alzheimer's disease
network},
journal = {Briefings Bioinform.},
volume = {24},
number = {1},
year = {2023},
url = {https://doi.org/10.1093/bib/bbac482},
doi = {10.1093/BIB/BBAC482},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/SebastianRK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenNLZL23,
author = {Jiaxing Chen and
Yen Kaow Ng and
Lu Lin and
Xianglilan Zhang and
Shuaicheng Li},
title = {On triangle inequalities of correlation-based distances for gene expression
profiles},
journal = {{BMC} Bioinform.},
volume = {24},
number = {1},
pages = {40},
year = {2023},
url = {https://doi.org/10.1186/s12859-023-05161-y},
doi = {10.1186/S12859-023-05161-Y},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenNLZL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cbm/HossenIRKHTFKM23,
author = {Md Bayazid Hossen and
Md Ariful Islam and
Md Selim Reza and
Md Kaderi Kibria and
Md Abu Horaira and
Khanis Farhana Tuly and
Md. Omar Faruqe and
Firoz Kabir and
Md. Nurul Haque Mollah},
title = {Robust identification of common genomic biomarkers from multiple gene
expression profiles for the prognosis, diagnosis, and therapies of
pancreatic cancer},
journal = {Comput. Biol. Medicine},
volume = {152},
pages = {106411},
year = {2023},
url = {https://doi.org/10.1016/j.compbiomed.2022.106411},
doi = {10.1016/J.COMPBIOMED.2022.106411},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cbm/HossenIRKHTFKM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mbec/KishoreVPMJ23,
author = {Akash Kishore and
Lokeswari Venkataramana and
D. Venkata Vara Prasad and
Akshaya Mohan and
Bhavya Jha},
title = {Enhancing the prediction of {IDC} breast cancer staging from gene
expression profiles using hybrid feature selection methods and deep
learning architecture},
journal = {Medical Biol. Eng. Comput.},
volume = {61},
number = {11},
pages = {2895--2919},
year = {2023},
url = {https://doi.org/10.1007/s11517-023-02892-1},
doi = {10.1007/S11517-023-02892-1},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mbec/KishoreVPMJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/KasianovKMBLP23,
author = {Artem S. Kasianov and
Anna V. Klepikova and
Alexey V. Mayorov and
Gleb S. Buzanov and
Maria D. Logacheva and
Aleksey A. Penin},
title = {Interspecific comparison of gene expression profiles using machine
learning},
journal = {PLoS Comput. Biol.},
volume = {19},
number = {1},
year = {2023},
url = {https://doi.org/10.1371/journal.pcbi.1010743},
doi = {10.1371/JOURNAL.PCBI.1010743},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/KasianovKMBLP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiXLMLFZL23,
author = {Aimin Li and
Siqi Xiong and
Junhuai Li and
Saurav Mallik and
Yajun Liu and
Rong Fei and
Hongfang Zhou and
Guangming Liu},
title = {AngClust: Angle Feature-Based Clustering for Short Time Series Gene
Expression Profiles},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1574--1580},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3192306},
doi = {10.1109/TCBB.2022.3192306},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiXLMLFZL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/YuZDG23,
author = {Liang Yu and
Huan Zhu and
Da Dong and
Lin Gao},
editor = {Xingpeng Jiang and
Haiying Wang and
Reda Alhajj and
Xiaohua Hu and
Felix Engel and
Mufti Mahmud and
Nadia Pisanti and
Xuefeng Cui and
Hong Song},
title = {Gene Expression Profile Prediction under Drug Action Based on Generative
Adversarial Networks},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2023, Istanbul, Turkiye, December 5-8, 2023},
pages = {203--208},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/BIBM58861.2023.10385855},
doi = {10.1109/BIBM58861.2023.10385855},
timestamp = {Thu, 14 Mar 2024 16:59:09 +0100},
biburl = {https://dblp.org/rec/conf/bibm/YuZDG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/daset/AbdullahY23,
author = {Mohammad Nasir Abdullah and
Bee Wah Yap},
editor = {Yap Bee Wah and
Dhiya Al{-}Jumeily Obe and
Michael W. Berry},
title = {Evaluation of Machine Learning Models for Breast Cancer Detection
in Microarray Gene Expression Profiles},
booktitle = {Data Science and Emerging Technologies - Proceedings of DaSET 2023,
Virtual Event, December 4-5, 2023},
series = {Lecture Notes on Data Engineering and Communications Technologies},
volume = {191},
pages = {563--576},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-981-97-0293-0\_40},
doi = {10.1007/978-981-97-0293-0\_40},
timestamp = {Mon, 06 May 2024 17:10:25 +0200},
biburl = {https://dblp.org/rec/conf/daset/AbdullahY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/evoapps/RojasVelazquezTRKR13,
author = {David Rojas{-}Velazquez and
Alberto Tonda and
Itzel Rodr{\'{\i}}guez{-}Guerra and
Aletta D. Kraneveld and
Alejandro Lopez Rincon},
editor = {Jo{\~{a}}o Correia and
Stephen L. Smith and
Raneem Qaddoura},
title = {Multi-objective Evolutionary Discretization of Gene Expression Profiles:
Application to {COVID-19} Severity Prediction},
booktitle = {Applications of Evolutionary Computation - 26th European Conference,
EvoApplications 2023, Held as Part of EvoStar 2023, Brno, Czech Republic,
April 12-14, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13989},
pages = {703--717},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-30229-9\_45},
doi = {10.1007/978-3-031-30229-9\_45},
timestamp = {Tue, 29 Aug 2023 15:18:02 +0200},
biburl = {https://dblp.org/rec/conf/evoapps/RojasVelazquezTRKR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2301-01769,
author = {Xihaier Luo and
Sean McCorkle and
Gilchan Park and
Vanessa L{\'{o}}pez{-}Marrero and
Shinjae Yoo and
Edward R. Dougherty and
Xiaoning Qian and
Francis J. Alexander and
Byung{-}Jun Yoon},
title = {Comprehensive analysis of gene expression profiles to radiation exposure
reveals molecular signatures of low-dose radiation response},
journal = {CoRR},
volume = {abs/2301.01769},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2301.01769},
doi = {10.48550/ARXIV.2301.01769},
eprinttype = {arXiv},
eprint = {2301.01769},
timestamp = {Fri, 13 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2301-01769.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2312-15825,
author = {Luis Carlos Rivera Monroy and
Leonhard Rist and
Martin Eberhardt and
Christian Ostalecki and
Andreas Bauer and
Julio Vera and
Katharina Breininger and
Andreas K. Maier},
title = {Comparative Analysis of Radiomic Features and Gene Expression Profiles
in Histopathology Data Using Graph Neural Networks},
journal = {CoRR},
volume = {abs/2312.15825},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2312.15825},
doi = {10.48550/ARXIV.2312.15825},
eprinttype = {arXiv},
eprint = {2312.15825},
timestamp = {Wed, 17 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2312-15825.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenLCZEZ22,
author = {Zhong Chen and
You Lu and
Bo Cao and
Wensheng Zhang and
Andrea Edwards and
Kun Zhang},
title = {Driver gene detection through Bayesian network integration of mutation
and expression profiles},
journal = {Bioinform.},
volume = {38},
number = {10},
pages = {2781--2790},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btac203},
doi = {10.1093/BIOINFORMATICS/BTAC203},
timestamp = {Mon, 13 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenLCZEZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenNLZL22,
author = {Jiaxing Chen and
Yen Kaow Ng and
Lu Lin and
Xianglilan Zhang and
Shuaicheng Li},
title = {Correction: On triangle inequalities of correlation-based distances
for gene expression profiles},
journal = {{BMC} Bioinform.},
volume = {23-S},
number = {3},
pages = {571},
year = {2022},
url = {https://doi.org/10.1186/s12859-023-05358-1},
doi = {10.1186/S12859-023-05358-1},
timestamp = {Mon, 05 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenNLZL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/entropy/MesaRodriguezGEV22,
author = {Ania Mesa{-}Rodr{\'{\i}}guez and
Augusto Gonzalez and
Ernesto Estevez{-}Rams and
Pedro A. Vald{\'{e}}s{-}Sosa},
title = {Cancer Segmentation by Entropic Analysis of Ordered Gene Expression
Profiles},
journal = {Entropy},
volume = {24},
number = {12},
pages = {1744},
year = {2022},
url = {https://doi.org/10.3390/e24121744},
doi = {10.3390/E24121744},
timestamp = {Tue, 31 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/entropy/MesaRodriguezGEV22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/ZhuZLOFYZ22,
author = {Yi{-}Heng Zhu and
Chengxin Zhang and
Yan Liu and
Gilbert S. Omenn and
Peter L. Freddolino and
Dong{-}Jun Yu and
Yang Zhang},
title = {TripletGO: Integrating Transcript Expression Profiles with Protein
Homology Inferences for Gene Function Prediction},
journal = {Genom. Proteom. Bioinform.},
volume = {20},
number = {5},
pages = {1013--1027},
year = {2022},
url = {https://doi.org/10.1016/j.gpb.2022.03.001},
doi = {10.1016/J.GPB.2022.03.001},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gpb/ZhuZLOFYZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmssc/DeshmukhVG22,
author = {Mandar Krishnarao Deshmukh and
Vinod M. Vaze and
Amit K. Gaikwad},
title = {Coyote-Wolf optimization-based deep neural network for cancer classification
using gene expression profiles},
journal = {Int. J. Model. Simul. Sci. Comput.},
volume = {13},
number = {6},
pages = {2250058:1--2250058:27},
year = {2022},
url = {https://doi.org/10.1142/S1793962322500581},
doi = {10.1142/S1793962322500581},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijmssc/DeshmukhVG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiuYLJTDHH22,
author = {Jinding Liu and
Fei Yin and
Kun Lang and
Wencai Jie and
Suxu Tan and
Rongjing Duan and
Shuiqing Huang and
Wen Huang},
title = {MetazExp: a database for gene expression and alternative splicing
profiles and their analyses based on 53 615 public RNA-seq samples
in 72 metazoan species},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{D1}},
pages = {1046--1054},
year = {2022},
url = {https://doi.org/10.1093/nar/gkab933},
doi = {10.1093/NAR/GKAB933},
timestamp = {Tue, 06 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/LiuYLJTDHH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhangZZXCNZPJSL22,
author = {Yuansheng Zhang and
Dong Zou and
Tongtong Zhu and
Tianyi Xu and
Ming Chen and
Guangyi Niu and
Wenting Zong and
Rong Pan and
Wei Jing and
Jian Sang and
Chang Liu and
Yujia Xiong and
Yubin Sun and
Shuang Zhai and
Huanxin Chen and
Wenming Zhao and
Jing{-}Fa Xiao and
Yiming Bao and
Lili Hao and
Zhang Zhang},
title = {Gene Expression Nebulas {(GEN):} a comprehensive data portal integrating
transcriptomic profiles across multiple species at both bulk and single-cell
levels},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{D1}},
pages = {1016--1024},
year = {2022},
url = {https://doi.org/10.1093/nar/gkab878},
doi = {10.1093/NAR/GKAB878},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZhangZZXCNZPJSL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nca/HanZLHLGC22,
author = {Fei Han and
Shaojun Zhu and
Qinghua Ling and
Henry Han and
Hailong Li and
Xinli Guo and
Jiechuan Cao},
title = {Gene-CWGAN: a data enhancement method for gene expression profile
based on improved {CWGAN-GP}},
journal = {Neural Comput. Appl.},
volume = {34},
number = {19},
pages = {16325--16339},
year = {2022},
url = {https://doi.org/10.1007/s00521-022-07417-9},
doi = {10.1007/S00521-022-07417-9},
timestamp = {Wed, 05 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nca/HanZLHLGC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MajumderTPS22,
author = {Subhasree Majumder and
Yogita Thakran and
Vipin Pal and
Kuldeep Singh},
title = {Fuzzy and Rough Set Theory Based Computational Framework for Mining
Genetic Interaction Triplets From Gene Expression Profiles for Lung
Adenocarcinoma},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3469--3481},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3120844},
doi = {10.1109/TCBB.2021.3120844},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MajumderTPS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SongPW22,
author = {Junrong Song and
Wei Peng and
Feng Wang},
title = {Identifying Cancer Patient Subgroups by Finding Co-Modules From the
Driver Mutation Profiles and Downstream Gene Expression Profiles},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2863--2872},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3106344},
doi = {10.1109/TCBB.2021.3106344},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SongPW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/LuoMPLYDQAY22,
author = {Xihaier Luo and
Sean McCorkle and
Gilchan Park and
Vanessa L{\'{o}}pez{-}Marrero and
Shinjae Yoo and
Edward R. Dougherty and
Xiaoning Qian and
Francis J. Alexander and
Byung{-}Jun Yoon},
editor = {Donald A. Adjeroh and
Qi Long and
Xinghua Mindy Shi and
Fei Guo and
Xiaohua Hu and
Srinivas Aluru and
Giri Narasimhan and
Jianxin Wang and
Mingon Kang and
Ananda Mondal and
Jin Liu},
title = {Comprehensive analysis of gene expression profiles to radiation exposure
reveals molecular signatures of low-dose radiation response},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2022, Las Vegas, NV, USA, December 6-8, 2022},
pages = {2366--2374},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/BIBM55620.2022.9995607},
doi = {10.1109/BIBM55620.2022.9995607},
timestamp = {Thu, 12 Jan 2023 09:26:28 +0100},
biburl = {https://dblp.org/rec/conf/bibm/LuoMPLYDQAY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gecco/MouhrimTRKR22,
author = {Nisrine Mouhrim and
Alberto Tonda and
Itzel Rodr{\'{\i}}guez{-}Guerra and
Aletta D. Kraneveld and
Alejandro Lopez Rincon},
editor = {Jonathan E. Fieldsend and
Markus Wagner},
title = {An evolutionary approach to the discretization of gene expression
profiles to predict the severity of {COVID-19}},
booktitle = {{GECCO} '22: Genetic and Evolutionary Computation Conference, Companion
Volume, Boston, Massachusetts, USA, July 9 - 13, 2022},
pages = {731--734},
publisher = {{ACM}},
year = {2022},
url = {https://doi.org/10.1145/3520304.3529001},
doi = {10.1145/3520304.3529001},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gecco/MouhrimTRKR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icimth/AuerAM022,
author = {Florian Auer and
Zhibek Abdykalykova and
Dominik M{\"{u}}ller and
Frank Kramer},
editor = {John Mantas and
Parisis Gallos and
Emmanouil Zoulias and
Arie Hasman and
Mowafa S. Househ and
Marianna Diomidous and
Joseph Liaskos and
Martha Charalampidou},
title = {Adaptation of {HL7} {FHIR} for the Exchange of Patients' Gene Expression
Profiles},
booktitle = {Advances in Informatics, Management and Technology in Healthcare,
{ICIMTH} 2022, 20th International Conference on Informatics, Management,
and Technology in Healthcare, Virtual Event / Athens, Greece, 1-3
July 2022},
series = {Studies in Health Technology and Informatics},
volume = {295},
pages = {332--335},
publisher = {{IOS} Press},
year = {2022},
url = {https://doi.org/10.3233/SHTI220730},
doi = {10.3233/SHTI220730},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icimth/AuerAM022.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isdmci/LiakhBDG22,
author = {Igor Liakh and
Sergii Babichev and
Bohdan Durnyak and
Iryna Gado},
editor = {Sergii Babichev and
Volodymyr Lytvynenko},
title = {Formation of Subsets of Co-expressed Gene Expression Profiles Based
on Joint Use of Fuzzy Inference System, Statistical Criteria and Shannon
Entropy},
booktitle = {Lecture Notes in Data Engineering, Computational Intelligence, and
Decision Making - 2022 International Scientific Conference "Intellectual
Systems of Decision-Making and Problems of Computational Intelligence",
Proceedings, {ISDMCI} 2022, Rivne, Ukraine, June 14-16, 2022},
series = {Lecture Notes on Data Engineering and Communications Technologies},
volume = {149},
pages = {25--41},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-16203-9\_2},
doi = {10.1007/978-3-031-16203-9\_2},
timestamp = {Sat, 04 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isdmci/LiakhBDG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwbbio/Bustos-AibarATA22,
author = {Mireia Bustos{-}Aibar and
Augusto Anguita{-}Ruiz and
{\'{A}}lvaro Torres{-}Martos and
Jes{\'{u}}s Alcal{\'{a}}{-}Fdez and
Francisco Javier Ruiz{-}Ojeda and
Marjorie Reyes{-}Farias and
Andrea Soria{-}Gondek and
Laura Herrero and
David S{\'{a}}nchez{-}Infantes and
Concepci{\'{o}}n Maria Aguilera},
editor = {Ignacio Rojas and
Olga Valenzuela and
Fernando Rojas and
Luis Javier Herrera and
Francisco M. Ortu{\~{n}}o},
title = {Gene Expression Profiles of Visceral and Subcutaneous Adipose Tissues
in Children with Overweight or Obesity: The {KIDADIPOSEQ} Project},
booktitle = {Bioinformatics and Biomedical Engineering - 9th International Work-Conference,
{IWBBIO} 2022, Maspalomas, Gran Canaria, Spain, June 27-30, 2022,
Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {13346},
pages = {42--46},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-07704-3\_4},
doi = {10.1007/978-3-031-07704-3\_4},
timestamp = {Tue, 26 Dec 2023 17:13:20 +0100},
biburl = {https://dblp.org/rec/conf/iwbbio/Bustos-AibarATA22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mie/AuerAM022,
author = {Florian Auer and
Zhibek Abdykalykova and
Dominik M{\"{u}}ller and
Frank Kramer},
editor = {Brigitte S{\'{e}}roussi and
Patrick Weber and
Ferdinand Dhombres and
Cyril Grouin and
Jan{-}David Liebe and
Sylvia Pelayo and
Andrea Pinna and
Bastien Rance and
Lucia Sacchi and
Adrien Ugon and
Arriel Benis and
Parisis Gallos},
title = {Implementation of Gene Expression Profiles in the {HL7} {FHIR} Standard},
booktitle = {Challenges of Trustable {AI} and Added-Value on Health - Proceedings
of {MIE} 2022, Medical Informatics Europe, Nice, France, May 27-30,
2022},
series = {Studies in Health Technology and Informatics},
volume = {294},
pages = {417--418},
publisher = {{IOS} Press},
year = {2022},
url = {https://doi.org/10.3233/SHTI220490},
doi = {10.3233/SHTI220490},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/mie/AuerAM022.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ricai/WuZ22,
author = {Di Wu and
Yafei Zhang},
title = {A Data Enhancement Method for Gene Expression Profile Based on Improved
conditional {SN-GAN}},
booktitle = {Proceedings of the 4th International Conference on Robotics, Intelligent
Control and Artificial Intelligence, {RICAI} 2022, Dongguan, China,
December 16-18, 2022},
pages = {1059--1064},
publisher = {{ACM}},
year = {2022},
url = {https://doi.org/10.1145/3584376.3584565},
doi = {10.1145/3584376.3584565},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ricai/WuZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/scdm/AhmadKT22,
author = {Farzana Kabir Ahmad and
Siti Sakira Kamaruddin and
Aysar Thamer Naser Tuaimah},
editor = {Rozaida Ghazali and
Nazri Mohd Nawi and
Mustafa Mat Deris and
Jemal H. Abawajy and
Nureize Arbaiy},
title = {Binary Bat Algorithm with Dynamic Bayesian Network for Feature Selection
on Cancer Gene Expression Profiles},
booktitle = {Recent Advances in Soft Computing and Data Mining - Proceedings of
the Fifth International Conference on Soft Computing and Data Mining
{(SCDM} 2022), May 30-31, 2022, Virtual Event},
series = {Lecture Notes in Networks and Systems},
volume = {457},
pages = {150--159},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-00828-3\_15},
doi = {10.1007/978-3-031-00828-3\_15},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/scdm/AhmadKT22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HuLLZG21,
author = {Fei{-}Fei Hu and
Chun{-}Jie Liu and
Lan{-}Lan Liu and
Qiong Zhang and
An{-}Yuan Guo},
title = {Expression profile of immune checkpoint genes and their roles in predicting
immunotherapy response},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa176},
doi = {10.1093/BIB/BBAA176},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/HuLLZG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangLWFW21,
author = {Xiaokang Wang and
Jinfeng Liu and
Danwen Wang and
Maohui Feng and
Xiongzhi Wu},
title = {Epigenetically regulated gene expression profiles reveal four molecular
subtypes with prognostic and therapeutic implications in colorectal
cancer},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa309},
doi = {10.1093/BIB/BBAA309},
timestamp = {Fri, 13 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/WangLWFW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangLLG21,
author = {Qiong Zhang and
Mei Luo and
Chun{-}Jie Liu and
An{-}Yuan Guo},
title = {{CCLA:} an accurate method and web server for cancer cell line authentication
using gene expression profiles},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa093},
doi = {10.1093/BIB/BBAA093},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ZhangLLG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FukushimaSHH21,
author = {Arika Fukushima and
Masahiro Sugimoto and
Satoru Hiwa and
Tomoyuki Hiroyasu},
title = {Bayesian approach for predicting responses to therapy from high-dimensional
time-course gene expression profiles},
journal = {{BMC} Bioinform.},
volume = {22},
number = {1},
pages = {132},
year = {2021},
url = {https://doi.org/10.1186/s12859-021-04052-4},
doi = {10.1186/S12859-021-04052-4},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FukushimaSHH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GaoHLLXSZZ21,
author = {Shengqiao Gao and
Lu Han and
Dan Luo and
Gang Liu and
Zhiyong Xiao and
Guangcun Shan and
Yongxiang Zhang and
Wenxia Zhou},
title = {Modeling drug mechanism of action with large scale gene-expression
profiles using GPAR, an artificial intelligence platform},
journal = {{BMC} Bioinform.},
volume = {22},
number = {1},
pages = {17},
year = {2021},
url = {https://doi.org/10.1186/s12859-020-03915-6},
doi = {10.1186/S12859-020-03915-6},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GaoHLLXSZZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/eswa/KochanTG21,
author = {Necla Kochan and
G. Yazgi T{\"{u}}t{\"{u}}nc{\"{u}} and
G{\"{o}}knur Giner},
title = {A new local covariance matrix estimation for the classification of
gene expression profiles in high dimensional RNA-Seq data},
journal = {Expert Syst. Appl.},
volume = {167},
pages = {114200},
year = {2021},
url = {https://doi.org/10.1016/j.eswa.2020.114200},
doi = {10.1016/J.ESWA.2020.114200},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/eswa/KochanTG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/NooriAA21,
author = {Soheir Noori and
Nabeel Al{-}A'Araji and
Eman Al{-}Shamery},
title = {Identifying protein complexes from protein-protein interaction networks
based on the gene expression profile and core-attachment approach},
journal = {J. Bioinform. Comput. Biol.},
volume = {19},
number = {3},
pages = {2150009:1--2150009:17},
year = {2021},
url = {https://doi.org/10.1142/S0219720021500098},
doi = {10.1142/S0219720021500098},
timestamp = {Mon, 26 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/NooriAA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/patterns/AneneKBM021,
author = {Chinedu Anthony Anene and
Faraz Khan and
Findlay Bewicke{-}Copley and
Eleni Maniati and
Jun Wang},
title = {{ACSNI:} An unsupervised machine-learning tool for prediction of tissue-specific
pathway components using gene expression profiles},
journal = {Patterns},
volume = {2},
number = {6},
pages = {100270},
year = {2021},
url = {https://doi.org/10.1016/j.patter.2021.100270},
doi = {10.1016/J.PATTER.2021.100270},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/patterns/AneneKBM021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/symmetry/BabichevYLD21,
author = {Sergii Babichev and
Lyudmyla Yasinska{-}Damri and
Igor Liakh and
Bohdan Durnyak},
title = {Comparison Analysis of Gene Expression Profiles Proximity Metrics},
journal = {Symmetry},
volume = {13},
number = {10},
pages = {1812},
year = {2021},
url = {https://doi.org/10.3390/sym13101812},
doi = {10.3390/SYM13101812},
timestamp = {Wed, 15 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/symmetry/BabichevYLD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/adma/Sazzed22,
author = {Salim Sazzed},
editor = {Bohan Li and
Lin Yue and
Jing Jiang and
Weitong Chen and
Xue Li and
Guodong Long and
Fei Fang and
Han Yu},
title = {Feature Selection in Gene Expression Profile Employing Relevancy and
Redundancy Measures and Binary Whale Optimization Algorithm {(BWOA)}},
booktitle = {Advanced Data Mining and Applications - 17th International Conference,
{ADMA} 2021, Sydney, NSW, Australia, February 2-4, 2022, Proceedings,
Part {I}},
series = {Lecture Notes in Computer Science},
volume = {13087},
pages = {45--60},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-95405-5\_4},
doi = {10.1007/978-3-030-95405-5\_4},
timestamp = {Sun, 28 May 2023 00:01:44 +0200},
biburl = {https://dblp.org/rec/conf/adma/Sazzed22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ai/Sazzed21,
author = {Salim Sazzed},
editor = {Luiza Antonie and
Pooya Moradian Zadeh},
title = {{ANOVA-SRC-BPSO:} a hybrid filter and swarm optimization-based method
for gene selection and cancer classification using gene expression
profiles},
booktitle = {Proceedings of the 34th Canadian Conference on Artificial Intelligence,
Canadian {AI} 2021, online, May 2021},
publisher = {Canadian Artificial Intelligence Association},
year = {2021},
url = {https://caiac.pubpub.org/pub/hay53dvq},
timestamp = {Thu, 28 Sep 2023 12:27:21 +0200},
biburl = {https://dblp.org/rec/conf/ai/Sazzed21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/LyuZYLLJBMB21,
author = {Minjie Lyu and
Yihan Zhang and
Luning Yang and
Xin Lin and
Yilin Li and
Huan Jin and
Anthony Graham Bellotti and
Nenad Mitic and
Vladimir Brusic},
editor = {Yufei Huang and
Lukasz A. Kurgan and
Feng Luo and
Xiaohua Hu and
Yidong Chen and
Edward R. Dougherty and
Andrzej Kloczkowski and
Yaohang Li},
title = {{PBMC} Cell Classification from Single Cell mRNA Expression by Artificial
Neural Networks, Profiles, Gene Markers, and Protein Markers},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2021, Houston, TX, USA, December 9-12, 2021},
pages = {3285--3290},
publisher = {{IEEE}},
year = {2021},
url = {https://doi.org/10.1109/BIBM52615.2021.9669826},
doi = {10.1109/BIBM52615.2021.9669826},
timestamp = {Thu, 28 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/LyuZYLLJBMB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/ZhaoHWFWGZNZ21,
author = {Cecheng Zhao and
Ziyang Huang and
Hui Wang and
Haitao Fu and
Dong Wang and
Yingjie Gao and
Haotian Zhu and
Xiaohui Niu and
Wen Zhang},
editor = {Yufei Huang and
Lukasz A. Kurgan and
Feng Luo and
Xiaohua Hu and
Yidong Chen and
Edward R. Dougherty and
Andrzej Kloczkowski and
Yaohang Li},
title = {A robust drug representation learning model for eliminating cell specificity
in gene expression profile and its application},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2021, Houston, TX, USA, December 9-12, 2021},
pages = {1191--1196},
publisher = {{IEEE}},
year = {2021},
url = {https://doi.org/10.1109/BIBM52615.2021.9669385},
doi = {10.1109/BIBM52615.2021.9669385},
timestamp = {Fri, 24 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibm/ZhaoHWFWGZNZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iddm/Yasinska-DamriL21,
author = {Lyudmyla Yasinska{-}Damri and
Igor Liakh and
Sergii Babichev and
Bohdan Durnyak},
editor = {Nataliya Shakhovska and
Addisson Salazar and
Ivan Izonin and
Jaime Campos},
title = {Evaluation of the Gene Expression Profiles Complex Proximity Metric
Effectiveness Based on a Hybrid Technique of Gene Expression Data
Extraction},
booktitle = {Proceedings of the 4th International Conference on Informatics {\&}
Data-Driven Medicine, Valencia, Spain, November 19 - 21, 2021},
series = {{CEUR} Workshop Proceedings},
volume = {3038},
pages = {150--160},
publisher = {CEUR-WS.org},
year = {2021},
url = {https://ceur-ws.org/Vol-3038/paper10.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:41 +0100},
biburl = {https://dblp.org/rec/conf/iddm/Yasinska-DamriL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ncaa/Zhu021,
author = {Shaojun Zhu and
Fei Han},
editor = {Haijun Zhang and
Zhi Yang and
Zhao Zhang and
Zhou Wu and
Tianyong Hao},
title = {A Data Enhancement Method for Gene Expression Profile Based on Improved
{WGAN-GP}},
booktitle = {Neural Computing for Advanced Applications - Second International
Conference, {NCAA} 2021, Guangzhou, China, August 27-30, 2021, Proceedings},
series = {Communications in Computer and Information Science},
volume = {1449},
pages = {242--254},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-981-16-5188-5\_18},
doi = {10.1007/978-981-16-5188-5\_18},
timestamp = {Wed, 06 Sep 2023 10:13:14 +0200},
biburl = {https://dblp.org/rec/conf/ncaa/Zhu021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/YangZXHZQXWF20,
author = {Yadong Yang and
Tao Zhang and
Rudan Xiao and
Xiaopeng Hao and
Huiqiang Zhang and
Hongzhu Qu and
Bingbing Xie and
Tao Wang and
Xiangdong Fang},
title = {Platform-independent approach for cancer detection from gene expression
profiles of peripheral blood cells},
journal = {Briefings Bioinform.},
volume = {21},
number = {3},
pages = {1006--1015},
year = {2020},
url = {https://doi.org/10.1093/bib/bbz027},
doi = {10.1093/BIB/BBZ027},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/YangZXHZQXWF20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/Sut20,
author = {Burcu Biterge S{\"{u}}t},
title = {Computational analysis of {TP53} vs. {CTNNB1} mutations in hepatocellular
carcinoma suggests distinct cancer subtypes with differential gene
expression profiles and chromatin states},
journal = {Comput. Biol. Chem.},
volume = {89},
pages = {107404},
year = {2020},
url = {https://doi.org/10.1016/j.compbiolchem.2020.107404},
doi = {10.1016/J.COMPBIOLCHEM.2020.107404},
timestamp = {Thu, 16 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/candc/Sut20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/ZhuZDHX20,
author = {Naiqiang Zhu and
Peng Zhang and
Lilong Du and
Jingyi Hou and
Baoshan Xu},
title = {Identification of key genes and expression profiles in osteoarthritis
by co-expressed network analysis},
journal = {Comput. Biol. Chem.},
volume = {85},
pages = {107225},
year = {2020},
url = {https://doi.org/10.1016/j.compbiolchem.2020.107225},
doi = {10.1016/J.COMPBIOLCHEM.2020.107225},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/candc/ZhuZDHX20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/WangCHSHYCSW20,
author = {Jun Wang and
Xiaowen Chen and
Funan He and
Xiao Song and
Shu Huang and
Wucheng Yue and
Yipei Chen and
Zhixi Su and
Chenghui Wang},
title = {Global Analysis of Gene Expression Profiles Provides Novel Insights
into the Development and Evolution of the Large Crustacean \emph{Eriocheir
sinensis}},
journal = {Genom. Proteom. Bioinform.},
volume = {18},
number = {4},
pages = {443--454},
year = {2020},
url = {https://doi.org/10.1016/j.gpb.2019.01.006},
doi = {10.1016/J.GPB.2019.01.006},
timestamp = {Tue, 20 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gpb/WangCHSHYCSW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijbra/JuniorCL20,
author = {Nivison Ruy Rocha Nery J{\'{u}}nior and
Daniela Barreiro Claro and
Janet C. Lindow},
title = {Similar gene expression profiles define leptospirosis clinical outcomes},
journal = {Int. J. Bioinform. Res. Appl.},
volume = {16},
number = {4},
pages = {373--386},
year = {2020},
url = {https://doi.org/10.1504/IJBRA.2020.113021},
doi = {10.1504/IJBRA.2020.113021},
timestamp = {Thu, 18 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijbra/JuniorCL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/AiLLWG20,
author = {Dongmei Ai and
Gang Liu and
Xiaoxin Li and
Yuduo Wang and
Man Guo},
title = {Calculation of immune cell proportion from batch tumor gene expression
profile based on support vector regression},
journal = {J. Bioinform. Comput. Biol.},
volume = {18},
number = {5},
pages = {2050030:1--2050030:15},
year = {2020},
url = {https://doi.org/10.1142/S0219720020500304},
doi = {10.1142/S0219720020500304},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/AiLLWG20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/LiXZLOW20,
author = {Hong{-}Dong Li and
Yunpei Xu and
Xiaoshu Zhu and
Quan Liu and
Gilbert S. Omenn and
Jianxin Wang},
title = {ClusterMine: {A} knowledge-integrated clustering approach based on
expression profiles of gene sets},
journal = {J. Bioinform. Comput. Biol.},
volume = {18},
number = {3},
pages = {2040009:1--2040009:25},
year = {2020},
url = {https://doi.org/10.1142/S0219720020400090},
doi = {10.1142/S0219720020400090},
timestamp = {Fri, 17 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/LiXZLOW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/MomenzadehSR20,
author = {Mohammadreza Momenzadeh and
Mohammadreza Sehhati and
Hossein Rabbani},
title = {Using hidden Markov model to predict recurrence of breast cancer based
on sequential patterns in gene expression profiles},
journal = {J. Biomed. Informatics},
volume = {111},
pages = {103570},
year = {2020},
url = {https://doi.org/10.1016/j.jbi.2020.103570},
doi = {10.1016/J.JBI.2020.103570},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
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author = {Guozhang Hu and
Rui Wang and
Bo Wei and
Le Wang and
Qi Yang and
Daliang Kong and
Chao Du},
title = {Prognostic Markers Identification in Glioma by Gene Expression Profile
Analysis},
journal = {J. Comput. Biol.},
volume = {27},
number = {1},
pages = {81--90},
year = {2020},
url = {https://doi.org/10.1089/cmb.2019.0217},
doi = {10.1089/CMB.2019.0217},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/HuWWWYKD20.bib},
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@article{DBLP:journals/jcb/WangDZ20,
author = {Ruike Wang and
Xia Du and
Yaqin Zhi},
title = {Screening of Critical Genes Involved in Metastasis and Prognosis of
High-Grade Serous Ovarian Cancer by Gene Expression Profile Data},
journal = {J. Comput. Biol.},
volume = {27},
number = {7},
pages = {1104--1114},
year = {2020},
url = {https://doi.org/10.1089/cmb.2019.0235},
doi = {10.1089/CMB.2019.0235},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/WangDZ20.bib},
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author = {Weiqing Wang and
Shaohua Wang and
Xiao Chu and
Hui Liu and
Ming Xiang},
title = {Predicting the Lung Squamous Cell Carcinoma Diagnosis and Prognosis
Markers by Unique {DNA} Methylation and Gene Expression Profiles},
journal = {J. Comput. Biol.},
volume = {27},
number = {7},
pages = {1041--1054},
year = {2020},
url = {https://doi.org/10.1089/cmb.2019.0138},
doi = {10.1089/CMB.2019.0138},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/WangWCLX20.bib},
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author = {Chenchen Feng and
Chao Song and
Yuejuan Liu and
Fengcui Qian and
Yu Gao and
Ziyu Ning and
Qiuyu Wang and
Yong Jiang and
Yanyu Li and
Meng Li and
Jiaxin Chen and
Jian Zhang and
Chunquan Li},
title = {KnockTF: a comprehensive human gene expression profile database with
knockdown/knockout of transcription factors},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Database-Issue},
pages = {D93--D100},
year = {2020},
url = {https://doi.org/10.1093/nar/gkz881},
doi = {10.1093/NAR/GKZ881},
timestamp = {Fri, 19 Jan 2024 00:00:00 +0100},
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@article{DBLP:journals/sensors/YuanSH20,
author = {Leiming Yuan and
Yiye Sun and
Guangzao Huang},
title = {Using Class-Specific Feature Selection for Cancer Detection with Gene
Expression Profile Data of Platelets},
journal = {Sensors},
volume = {20},
number = {5},
pages = {1528},
year = {2020},
url = {https://doi.org/10.3390/s20051528},
doi = {10.3390/S20051528},
timestamp = {Thu, 29 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/sensors/YuanSH20.bib},
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author = {Mohamed Loey Ramadan AbdElNabi and
Mohammed Wajeeh Jasim and
Hazem M. El{-}Bakry and
Mohamed Hamed N. Taha and
Nour Eldeen Mahmoud Khalifa},
title = {Breast and Colon Cancer Classification from Gene Expression Profiles
Using Data Mining Techniques},
journal = {Symmetry},
volume = {12},
number = {3},
pages = {408},
year = {2020},
url = {https://doi.org/10.3390/sym12030408},
doi = {10.3390/SYM12030408},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
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author = {Haifen Chen and
D. A. K. Maduranga and
Piyushkumar A. Mundra and
Jie Zheng},
title = {Bayesian Data Fusion of Gene Expression and Histone Modification Profiles
for Inference of Gene Regulatory Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {17},
number = {2},
pages = {516--525},
year = {2020},
url = {https://doi.org/10.1109/TCBB.2018.2869590},
doi = {10.1109/TCBB.2018.2869590},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
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@article{DBLP:journals/tcbb/ZhangXZ20,
author = {Wei Zhang and
Jia Xu and
Xiufen Zou},
title = {Predicting Essential Proteins by Integrating Network Topology, Subcellular
Localization Information, Gene Expression Profile and {GO} Annotation
Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {17},
number = {6},
pages = {2053--2061},
year = {2020},
url = {https://doi.org/10.1109/TCBB.2019.2916038},
doi = {10.1109/TCBB.2019.2916038},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
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@inproceedings{DBLP:conf/bibm/ZhangYB20,
author = {Yihan Zhang and
Luning Yang and
Vladimir Brusic},
editor = {Taesung Park and
Young{-}Rae Cho and
Xiaohua Hu and
Illhoi Yoo and
Hyun Goo Woo and
Jianxin Wang and
Julio C. Facelli and
Seungyoon Nam and
Mingon Kang},
title = {Automation of Gene Expression Profile Analysis in Single Cell Data},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2020, Virtual Event, South Korea, December 16-19, 2020},
pages = {1329--1334},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/BIBM49941.2020.9313510},
doi = {10.1109/BIBM49941.2020.9313510},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibm/ZhangYB20.bib},
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@inproceedings{DBLP:conf/healthcom/PengZYLLH0W20,
author = {Shaoliang Peng and
Lei Zhang and
Yaning Yang and
Wei Liu and
Fei Li and
Hao Hong and
Kenli Li and
Shulin Wang},
title = {A deep metric learning algorithm for similarity measure of the gene
expression profile},
booktitle = {22nd {IEEE} International Conference on E-health Networking, Application
{\&} Services, HealthCom 2020, Shenzhen, China, March 1-2, 2021},
pages = {1--6},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/HEALTHCOM49281.2021.9398919},
doi = {10.1109/HEALTHCOM49281.2021.9398919},
timestamp = {Thu, 22 Apr 2021 14:37:45 +0200},
biburl = {https://dblp.org/rec/conf/healthcom/PengZYLLH0W20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@inproceedings{DBLP:conf/icic/GaoCMZAZY20,
author = {Yujia Gao and
Yiqiong Chen and
Zhiyu Ma and
Tao Zeng and
Iftikhar Ahmad and
Youhua Zhang and
Zhenyu Yue},
editor = {De{-}Shuang Huang and
Kang{-}Hyun Jo},
title = {Identification of Rice Drought-Resistant Gene Based on Gene Expression
Profiles and Network Analysis Algorithm},
booktitle = {Intelligent Computing Theories and Application - 16th International
Conference, {ICIC} 2020, Bari, Italy, October 2-5, 2020, Proceedings,
Part {II}},
series = {Lecture Notes in Computer Science},
volume = {12464},
pages = {290--301},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-60802-6\_26},
doi = {10.1007/978-3-030-60802-6\_26},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icic/GaoCMZAZY20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@inproceedings{DBLP:conf/isdmci/BabichevKDS20,
author = {Sergii Babichev and
Orest Khamula and
Bohdan Durnyak and
Jir{\'{\i}} Skvor},
editor = {Sergii Babichev and
Volodymyr Lytvynenko and
Waldemar W{\'{o}}jcik and
Svetlana Vyshemyrskaya},
title = {Technique of Gene Expression Profiles Selection Based on {SOTA} Clustering
Algorithm Using Statistical Criteria and Shannon Entropy},
booktitle = {Lecture Notes in Computational Intelligence and Decision Making -
Proceedings of the 2020 International Scientific Conference "Intellectual
Systems of Decision-making and Problems of Computational Intelligence",
{ISDMCI} 2020, Kherson, Ukraine, May 25-29, 2020},
series = {Advances in Intelligent Systems and Computing},
volume = {1246},
pages = {23--38},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-54215-3\_2},
doi = {10.1007/978-3-030-54215-3\_2},
timestamp = {Thu, 16 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isdmci/BabichevKDS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@misc{DBLP:data/10/Taguchi20a,
author = {Y{-}h. Taguchi},
title = {Novel Method for the Prediction of Drug-Drug Interactions Based on
Gene Expression Profiles},
publisher = {{IEEE} DataPort},
year = {2020},
month = jun,
howpublished = {\url{https://doi.org/10.21227/dch5-pm30}},
note = {Accessed on YYYY-MM-DD.},
url = {https://doi.org/10.21227/dch5-pm30},
doi = {10.21227/DCH5-PM30},
timestamp = {Wed, 15 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/data/10/Taguchi20a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Lu Han and
Guangcun Shan and
H. Y. Wang and
Shengqiao Gao and
Wenxia Zhou},
title = {Accelerating drug repurposing for {COVID-19} via modeling drug mechanism
of action with large scale gene-expression profiles},
journal = {CoRR},
volume = {abs/2005.07567},
year = {2020},
url = {https://arxiv.org/abs/2005.07567},
eprinttype = {arXiv},
eprint = {2005.07567},
timestamp = {Wed, 13 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2005-07567.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Nada Almugren and
Hala M. Alshamlan},
title = {New Bio-Marker Gene Discovery Algorithms for Cancer Gene Expression
Profile},
journal = {{IEEE} Access},
volume = {7},
pages = {136907--136913},
year = {2019},
url = {https://doi.org/10.1109/ACCESS.2019.2942413},
doi = {10.1109/ACCESS.2019.2942413},
timestamp = {Thu, 07 Nov 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/access/AlmugrenA19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/LeeCCJLTLC19,
author = {Chien{-}Yueh Lee and
Amrita Chattopadhyay and
Li{-}Mei Chiang and
Jyh{-}Ming Jimmy Juang and
Liang{-}Chuan Lai and
Mong{-}Hsun Tsai and
Tzu{-}Pin Lu and
Eric Y. Chuang},
title = {VariED: the first integrated database of gene annotation and expression
profiles for variants related to human diseases},
journal = {Database J. Biol. Databases Curation},
volume = {2019},
pages = {baz075},
year = {2019},
url = {https://doi.org/10.1093/database/baz075},
doi = {10.1093/DATABASE/BAZ075},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/LeeCCJLTLC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bioinformatics/HouDF19,
author = {Rui Hou and
Elena Denisenko and
Alistair R. R. Forrest},
title = {scMatch: a single-cell gene expression profile annotation tool using
reference datasets},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4688--4695},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz292},
doi = {10.1093/BIOINFORMATICS/BTZ292},
timestamp = {Mon, 15 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HouDF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Wei Zhou and
Karel K. M. Koudijs and
Stefan B{\"{o}}hringer},
title = {Influence of batch effect correction methods on drug induced differential
gene expression profiles},
journal = {{BMC} Bioinform.},
volume = {20},
number = {1},
pages = {437:1--437:14},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-3028-6},
doi = {10.1186/S12859-019-3028-6},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhouKB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Teppei Matsubara and
Tomoshiro Ochiai and
Morihiro Hayashida and
Tatsuya Akutsu and
Jose C. Nacher},
title = {Convolutional neural network approach to lung cancer classification
integrating protein interaction network and gene expression profiles},
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volume = {17},
number = {3},
pages = {1940007:1--1940007:11},
year = {2019},
url = {https://doi.org/10.1142/S0219720019400079},
doi = {10.1142/S0219720019400079},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/MatsubaraOHAN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/WangPLZY19,
author = {Liang Wang and
Yuquan Pei and
Shaolei Li and
Shanyuan Zhang and
Yue Yang},
title = {Distinct Molecular Mechanisms Analysis of Three Lung Cancer Subtypes
Based on Gene Expression Profiles},
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volume = {26},
number = {10},
pages = {1140--1155},
year = {2019},
url = {https://doi.org/10.1089/cmb.2019.0046},
doi = {10.1089/CMB.2019.0046},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/WangPLZY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Tao Chen},
title = {The classification of gene expression profiles based on improved rotation
forest algorithm},
journal = {J. Intell. Fuzzy Syst.},
volume = {37},
number = {3},
pages = {3125--3135},
year = {2019},
url = {https://doi.org/10.3233/JIFS-179115},
doi = {10.3233/JIFS-179115},
timestamp = {Sat, 25 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jifs/Chen19b.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Mingze He and
Kokulapalan Wimalanathan and
Peng Liu and
Carolyn J. Lawrence{-}Dill},
title = {Compare Expression Profiles for Pre-defined Gene Groups with C-REx},
journal = {J. Open Source Softw.},
volume = {4},
number = {37},
pages = {1255},
year = {2019},
url = {https://doi.org/10.21105/joss.01255},
doi = {10.21105/JOSS.01255},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jossw/HeWLL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/tcbb/MajumderSS19,
author = {Aurpan Majumder and
Mrityunjay Sarkar and
Prolay Sharma},
title = {A Composite Mode Differential Gene Regulatory Architecture based on
Temporal Expression Profiles},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {16},
number = {6},
pages = {1785--1793},
year = {2019},
url = {https://doi.org/10.1109/TCBB.2018.2828418},
doi = {10.1109/TCBB.2018.2828418},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MajumderSS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@inproceedings{DBLP:conf/bibm/TranRE19,
author = {Tuan Tran and
Tania Rajpersaud and
Chinwe Ekenna},
editor = {Illhoi Yoo and
Jinbo Bi and
Xiaohua Hu},
title = {Predicting the Expression Profile for Plasmodium Falciparum Genes
during the Blood Stage Life Cycle},
booktitle = {2019 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2019, San Diego, CA, USA, November 18-21, 2019},
pages = {736--740},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/BIBM47256.2019.8983161},
doi = {10.1109/BIBM47256.2019.8983161},
timestamp = {Fri, 09 Apr 2021 17:11:15 +0200},
biburl = {https://dblp.org/rec/conf/bibm/TranRE19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@inproceedings{DBLP:conf/emnlp/CaoC19,
author = {Meng Cao and
Jackie Chi Kit Cheung},
editor = {Kentaro Inui and
Jing Jiang and
Vincent Ng and
Xiaojun Wan},
title = {Referring Expression Generation Using Entity Profiles},
booktitle = {Proceedings of the 2019 Conference on Empirical Methods in Natural
Language Processing and the 9th International Joint Conference on
Natural Language Processing, {EMNLP-IJCNLP} 2019, Hong Kong, China,
November 3-7, 2019},
pages = {3161--3170},
publisher = {Association for Computational Linguistics},
year = {2019},
url = {https://doi.org/10.18653/v1/D19-1312},
doi = {10.18653/V1/D19-1312},
timestamp = {Thu, 07 Apr 2022 09:14:07 +0200},
biburl = {https://dblp.org/rec/conf/emnlp/CaoC19.bib},
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@inproceedings{DBLP:conf/eusflat/BabichevBFS19,
author = {Sergii Babichev and
Jir{\'{\i}} Barilla and
Jir{\'{\i}} Fiser and
Jir{\'{\i}} Skvor},
editor = {Vil{\'{e}}m Nov{\'{a}}k and
Vladim{\'{\i}}r Mar{\'{\i}}k and
Martin Stepnicka and
Mirko Navara and
Petr Hurt{\'{\i}}k},
title = {A Hybrid Model of Gene Expression Profiles Reducing Based on the Complex
Use of Fuzzy Inference System and Clustering Quality Criteria},
booktitle = {Proceedings of the 11th Conference of the European Society for Fuzzy
Logic and Technology, {EUSFLAT} 2019, Prague, Czech Republic, September
9-13, 2019},
series = {Atlantis Studies in Uncertainty Modelling},
volume = {1},
publisher = {Atlantis Press},
year = {2019},
url = {https://doi.org/10.2991/eusflat-19.2019.20},
doi = {10.2991/EUSFLAT-19.2019.20},
timestamp = {Fri, 29 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eusflat/BabichevBFS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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author = {Meng Cao and
Jackie Chi Kit Cheung},
title = {Referring Expression Generation Using Entity Profiles},
journal = {CoRR},
volume = {abs/1909.01528},
year = {2019},
url = {http://arxiv.org/abs/1909.01528},
eprinttype = {arXiv},
eprint = {1909.01528},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1909-01528.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Nan Papili Gao and
S. M. Minhaz Ud{-}Dean and
Olivier Gandrillon and
Rudiyanto Gunawan},
title = {{SINCERITIES:} inferring gene regulatory networks from time-stamped
single cell transcriptional expression profiles},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {258--266},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx575},
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timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaoUGG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Yuanfang Guan and
Tingyang Li and
Hongjiu Zhang and
Fan Zhu and
Gilbert S. Omenn},
title = {Prioritizing predictive biomarkers for gene essentiality in cancer
cells with mRNA expression data and {DNA} copy number profile},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {3975--3982},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty467},
doi = {10.1093/BIOINFORMATICS/BTY467},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuanLZZO18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Y{-}h. Taguchi},
title = {Tensor decomposition-based and principal-component-analysis-based
unsupervised feature extraction applied to the gene expression and
methylation profiles in the brains of social insects with multiple
castes},
journal = {{BMC} Bioinform.},
volume = {19-S},
number = {4},
pages = {99:1--99:13},
year = {2018},
url = {https://doi.org/10.1186/s12859-018-2068-7},
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timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Taguchi18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Jie{-}Huei Wang and
Yi{-}Hau Chen},
title = {Overlapping group screening for detection of gene-gene interactions:
application to gene expression profiles with survival trait},
journal = {{BMC} Bioinform.},
volume = {19},
number = {1},
pages = {335:1--335:14},
year = {2018},
url = {https://doi.org/10.1186/s12859-018-2372-2},
doi = {10.1186/S12859-018-2372-2},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WangC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/data/Babichev18,
author = {Sergii Babichev},
title = {An Evaluation of the Information Technology of Gene Expression Profiles
Processing Stability for Different Levels of Noise Components},
journal = {Data},
volume = {3},
number = {4},
pages = {48},
year = {2018},
url = {https://doi.org/10.3390/data3040048},
doi = {10.3390/DATA3040048},
timestamp = {Fri, 19 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/data/Babichev18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijon/FerdousBVLW18,
author = {Mohsina Mahmuda Ferdous and
Yanchun Bao and
Veronica Vinciotti and
Xiaohui Liu and
Paul Wilson},
title = {Predicting gene expression from genome wide protein binding profiles},
journal = {Neurocomputing},
volume = {275},
pages = {1490--1499},
year = {2018},
url = {https://doi.org/10.1016/j.neucom.2017.09.094},
doi = {10.1016/J.NEUCOM.2017.09.094},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijon/FerdousBVLW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/NikdelfazJ18,
author = {Ozra Nikdelfaz and
Saeed Jalili},
title = {Disease genes prediction by {HMM} based PU-learning using gene expression
profiles},
journal = {J. Biomed. Informatics},
volume = {81},
pages = {102--111},
year = {2018},
url = {https://doi.org/10.1016/j.jbi.2018.03.006},
doi = {10.1016/J.JBI.2018.03.006},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/NikdelfazJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/kbs/WangACLA18,
author = {Aiguo Wang and
Ning An and
Guilin Chen and
Li Liu and
Gil Alterovitz},
title = {Subtype dependent biomarker identification and tumor classification
from gene expression profiles},
journal = {Knowl. Based Syst.},
volume = {146},
pages = {104--117},
year = {2018},
url = {https://doi.org/10.1016/j.knosys.2018.01.025},
doi = {10.1016/J.KNOSYS.2018.01.025},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/kbs/WangACLA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/MatsubaraOHAN18,
author = {Teppei Matsubara and
Tomoshiro Ochiai and
Morihiro Hayashida and
Tatsuya Akutsu and
Jose C. Nacher},
title = {Convolutional Neural Network Approach to Lung Cancer Classification
Integrating Protein Interaction Network and Gene Expression Profiles},
booktitle = {18th {IEEE} International Conference on Bioinformatics and Bioengineering,
{BIBE} 2018, Taichung, Taiwan, October 29-31, 2018},
pages = {151--154},
publisher = {{IEEE}},
year = {2018},
url = {https://doi.org/10.1109/BIBE.2018.00036},
doi = {10.1109/BIBE.2018.00036},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibe/MatsubaraOHAN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dsmp/BabichevLSKV18,
author = {Sergii Babichev and
Volodymyr Lytvynenko and
Jir{\'{\i}} Skvor and
Maxim Korobchynskyi and
Maria Voronenko},
title = {Information Technology of Gene Expression Profiles Processing for
Purpose of Gene Regulatory Networks Reconstruction},
booktitle = {Second International Conference on Data Stream Mining {\&} Processing,
{DSMP} 2018, Lviv, Ukraine, August 21-25, 2018},
pages = {336--341},
publisher = {{IEEE}},
year = {2018},
url = {https://doi.org/10.1109/DSMP.2018.8478452},
doi = {10.1109/DSMP.2018.8478452},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dsmp/BabichevLSKV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/siu/OzgulBT18,
author = {Ozan Firat {\"{O}}zg{\"{u}}l and
Batuhan Bardak and
Mehmet Tan},
title = {Predicting drug activity by image encoded gene expression profiles},
booktitle = {26th Signal Processing and Communications Applications Conference,
{SIU} 2018, Izmir, Turkey, May 2-5, 2018},
pages = {1--4},
publisher = {{IEEE}},
year = {2018},
url = {https://doi.org/10.1109/SIU.2018.8404799},
doi = {10.1109/SIU.2018.8404799},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/siu/OzgulBT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1805-01506,
author = {Md Mehedi Hassan Onik and
Shakhawat Ahmmed Nobin and
Adnan Ferdous Ashrafi and
Tareque Mohmud Chowdhury},
title = {Prediction of a Gene Regulatory Network from Gene Expression Profiles
With Linear Regression and Pearson Correlation Coefficient},
journal = {CoRR},
volume = {abs/1805.01506},
year = {2018},
url = {http://arxiv.org/abs/1805.01506},
eprinttype = {arXiv},
eprint = {1805.01506},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1805-01506.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1806-04863,
author = {Farzad Abdolhosseini and
Behrooz Azarkhalili and
Abbas Maazallahi and
Aryan Kamal and
Seyed Abolfazl Motahari and
Ali Sharifi{-}Zarchi and
Hamidreza Chitsaz},
title = {Cell Identity Codes: Understanding Cell Identity from Gene Expression
Profiles using Deep Neural Networks},
journal = {CoRR},
volume = {abs/1806.04863},
year = {2018},
url = {http://arxiv.org/abs/1806.04863},
eprinttype = {arXiv},
eprint = {1806.04863},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1806-04863.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/artmed/LiXCHWLLQCX17,
author = {Xiangyi Li and
Yingjie Xu and
Hui Cui and
Tao Huang and
Disong Wang and
Baofeng Lian and
Wei Li and
Guangrong Qin and
Lanming Chen and
Lu Xie},
title = {Prediction of synergistic anti-cancer drug combinations based on drug
target network and drug induced gene expression profiles},
journal = {Artif. Intell. Medicine},
volume = {83},
pages = {35--43},
year = {2017},
url = {https://doi.org/10.1016/j.artmed.2017.05.008},
doi = {10.1016/J.ARTMED.2017.05.008},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/artmed/LiXCHWLLQCX17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/asc/SalemAE17,
author = {Hanaa Salem and
Gamal Attiya and
Nawal A. El{-}Fishawy},
title = {Classification of human cancer diseases by gene expression profiles},
journal = {Appl. Soft Comput.},
volume = {50},
pages = {124--134},
year = {2017},
url = {https://doi.org/10.1016/j.asoc.2016.11.026},
doi = {10.1016/J.ASOC.2016.11.026},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/asc/SalemAE17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KleinSZ17,
author = {Michael I. Klein and
David F. Stern and
Hongyu Zhao},
title = {{GRAPE:} a pathway template method to characterize tissue-specific
functionality from gene expression profiles},
journal = {{BMC} Bioinform.},
volume = {18},
number = {1},
pages = {317},
year = {2017},
url = {https://doi.org/10.1186/s12859-017-1711-z},
doi = {10.1186/S12859-017-1711-Z},
timestamp = {Thu, 28 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KleinSZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HuhtinenHLLPS17,
author = {Anna Huhtinen and
Vesa Hongisto and
Asta Laiho and
Eliisa L{\"{o}}yttyniemi and
Dirk Pijnenburg and
Mika Scheinin},
title = {Gene expression profiles and signaling mechanisms in {\(\alpha\)}2B-adrenoceptor-evoked
proliferation of vascular smooth muscle cells},
journal = {{BMC} Syst. Biol.},
volume = {11},
number = {1},
pages = {65:1--65:30},
year = {2017},
url = {https://doi.org/10.1186/s12918-017-0439-8},
doi = {10.1186/S12918-017-0439-8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HuhtinenHLLPS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/XieHHLLHW17,
author = {Fanfan Xie and
Mingxiong He and
Li He and
Keqin Liu and
Menglong Li and
Guoquan Hu and
Zhining Wen},
title = {Bipartite network analysis reveals metabolic gene expression profiles
that are highly associated with the clinical outcomes of acute myeloid
leukemia},
journal = {Comput. Biol. Chem.},
volume = {67},
pages = {150--157},
year = {2017},
url = {https://doi.org/10.1016/j.compbiolchem.2017.01.002},
doi = {10.1016/J.COMPBIOLCHEM.2017.01.002},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/candc/XieHHLLHW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijbra/KeretsuS17,
author = {Seketoulie Keretsu and
Rosy Sarmah},
title = {Identification of protein complexes in protein-protein interaction
networks by core-attachment approach incorporating gene expression
profile},
journal = {Int. J. Bioinform. Res. Appl.},
volume = {13},
number = {4},
pages = {313--328},
year = {2017},
url = {https://doi.org/10.1504/IJBRA.2017.10007988},
doi = {10.1504/IJBRA.2017.10007988},
timestamp = {Fri, 11 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijbra/KeretsuS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isci/MajiSP17,
author = {Pradipta Maji and
Ekta Shah and
Sushmita Paul},
title = {RelSim: An integrated method to identify disease genes using gene
expression profiles and {PPIN} based similarity measure},
journal = {Inf. Sci.},
volume = {384},
pages = {110--125},
year = {2017},
url = {https://doi.org/10.1016/j.ins.2016.06.034},
doi = {10.1016/J.INS.2016.06.034},
timestamp = {Wed, 14 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isci/MajiSP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/paa/SalemAE17,
author = {Hanaa Salem and
Gamal Attiya and
Nawal A. El{-}Fishawy},
title = {Early diagnosis of breast cancer by gene expression profiles},
journal = {Pattern Anal. Appl.},
volume = {20},
number = {2},
pages = {567--578},
year = {2017},
url = {https://doi.org/10.1007/s10044-016-0574-7},
doi = {10.1007/S10044-016-0574-7},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/paa/SalemAE17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/BhallaSR17,
author = {Sherry Bhalla and
Suresh Sharma and
Gajendra Pal Singh Raghava},
editor = {Nurit Haspel and
Lenore J. Cowen and
Amarda Shehu and
Tamer Kahveci and
Giuseppe Pozzi},
title = {Challenges in Prediction of different Cancer Stages using Gene Expression
Profile of Cancer Patients},
booktitle = {Proceedings of the 8th {ACM} International Conference on Bioinformatics,
Computational Biology, and Health Informatics, {BCB} 2017, Boston,
MA, USA, August 20-23, 2017},
pages = {602},
publisher = {{ACM}},
year = {2017},
url = {https://doi.org/10.1145/3107411.3108211},
doi = {10.1145/3107411.3108211},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/BhallaSR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bhi/LiWWXW17,
author = {Danping Li and
Lei Wang and
Jiajun Wang and
Zhong Xue and
Stephen T. C. Wong},
title = {Transductive local fisher discriminant analysis for gene expression
profile-based cancer classification},
booktitle = {2017 {IEEE} {EMBS} International Conference on Biomedical {\&}
Health Informatics, {BHI} 2017, Orland, FL, USA, February 16-19, 2017},
pages = {49--52},
publisher = {{IEEE}},
year = {2017},
url = {https://doi.org/10.1109/BHI.2017.7897202},
doi = {10.1109/BHI.2017.7897202},
timestamp = {Wed, 16 Oct 2019 14:14:51 +0200},
biburl = {https://dblp.org/rec/conf/bhi/LiWWXW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biostec/JuniorO17,
author = {S{\'{e}}rgio Mosquim J{\'{u}}nior and
Juliana de Oliveira},
editor = {Hesham H. Ali and
Ana L. N. Fred and
Hugo Gamboa and
M{\'{a}}rio Vaz},
title = {Comparative Study on Data Mining Techniques Applied to Breast Cancer
Gene Expression Profiles},
booktitle = {Proceedings of the 10th International Joint Conference on Biomedical
Engineering Systems and Technologies {(BIOSTEC} 2017) - Volume 3:
BIOINFORMATICS, Porto, Portugal, February 21-23, 2017},
pages = {168--175},
publisher = {SciTePress},
year = {2017},
url = {https://doi.org/10.5220/0006170201680175},
doi = {10.5220/0006170201680175},
timestamp = {Thu, 15 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/biostec/JuniorO17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/WuLW17,
author = {Shuyang Wu and
Anthony Law and
Mark E. Whipple},
editor = {Adi V. Gundlapalli and
Marie{-}Christine Jaulent and
Dongsheng Zhao},
title = {A Bayesian Network Model of Head and Neck Squamous Cell Carcinoma
Incorporating Gene Expression Profiles},
booktitle = {{MEDINFO} 2017: Precision Healthcare through Informatics - Proceedings
of the 16th World Congress on Medical and Health Informatics, Hangzhou,
China, 21-25 August 2017},
series = {Studies in Health Technology and Informatics},
volume = {245},
pages = {634--638},
publisher = {{IOS} Press},
year = {2017},
url = {https://doi.org/10.3233/978-1-61499-830-3-634},
doi = {10.3233/978-1-61499-830-3-634},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/WuLW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sac/YelbayGJ17,
author = {Belma Yelbay and
Alexander Gow and
Hasan M. Jamil},
editor = {Ahmed Seffah and
Birgit Penzenstadler and
Carina Alves and
Xin Peng},
title = {Ranking novel regulatory genes in gene expression profiles using NetExpress},
booktitle = {Proceedings of the Symposium on Applied Computing, {SAC} 2017, Marrakech,
Morocco, April 3-7, 2017},
pages = {24--27},
publisher = {{ACM}},
year = {2017},
url = {https://doi.org/10.1145/3019612.3021289},
doi = {10.1145/3019612.3021289},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sac/YelbayGJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vinci/ShamaLDMC17,
author = {Saila Shama and
Philip Lu and
Narumol Doungpan and
Asawin Meechai and
Jonathan H. Chan},
editor = {Robert P. Biuk{-}Aghai and
Jie Li and
Shigeo Takahashi},
title = {Gene-set profiles: visualizing dissimilarity within gene co-expression
networks for biomarker identification},
booktitle = {Proceedings of the 10th International Symposium on Visual Information
Communication and Interaction, {VINCI} 2017, Bangkok, Thailand, August
14-16, 2017},
pages = {79--80},
publisher = {{ACM}},
year = {2017},
url = {https://doi.org/10.1145/3105971.3108448},
doi = {10.1145/3105971.3108448},
timestamp = {Tue, 06 Nov 2018 16:57:23 +0100},
biburl = {https://dblp.org/rec/conf/vinci/ShamaLDMC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1708-04988,
author = {Assya Trofimov and
S{\'{e}}bastien Lemieux and
Claude Perreault},
title = {Warp: a method for neural network interpretability applied to gene
expression profiles},
journal = {CoRR},
volume = {abs/1708.04988},
year = {2017},
url = {http://arxiv.org/abs/1708.04988},
eprinttype = {arXiv},
eprint = {1708.04988},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1708-04988.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1709-02082,
author = {Romain Lopez and
Jeffrey Regier and
Michael I. Jordan and
Nir Yosef},
title = {A deep generative model for gene expression profiles from single-cell
{RNA} sequencing},
journal = {CoRR},
volume = {abs/1709.02082},
year = {2017},
url = {http://arxiv.org/abs/1709.02082},
eprinttype = {arXiv},
eprint = {1709.02082},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1709-02082.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NohG16,
author = {Heeju Noh and
Rudiyanto Gunawan},
title = {Inferring gene targets of drugs and chemical compounds from gene expression
profiles},
journal = {Bioinform.},
volume = {32},
number = {14},
pages = {2120--2127},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw148},
doi = {10.1093/BIOINFORMATICS/BTW148},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NohG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biosystems/OchiaiN16,
author = {Tomoshiro Ochiai and
Jose C. Nacher},
title = {Predicting link directionality in gene regulation from gene expression
profiles using volatility-constrained correlation},
journal = {Biosyst.},
volume = {145},
pages = {9--18},
year = {2016},
url = {https://doi.org/10.1016/j.biosystems.2016.05.003},
doi = {10.1016/J.BIOSYSTEMS.2016.05.003},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biosystems/OchiaiN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LyuL16,
author = {Yafei Lyu and
Qunhua Li},
title = {A semi-parametric statistical model for integrating gene expression
profiles across different platforms},
journal = {{BMC} Bioinform.},
volume = {17},
number = {{S-1}},
pages = {5},
year = {2016},
url = {https://doi.org/10.1186/s12859-015-0847-y},
doi = {10.1186/S12859-015-0847-Y},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LyuL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Ud-DeanHKG16,
author = {S. M. Minhaz Ud{-}Dean and
Sandra Heise and
Steffen Klamt and
Rudiyanto Gunawan},
title = {TRaCE+: Ensemble inference of gene regulatory networks from transcriptional
expression profiles of gene knock-out experiments},
journal = {{BMC} Bioinform.},
volume = {17},
pages = {252},
year = {2016},
url = {https://doi.org/10.1186/s12859-016-1137-z},
doi = {10.1186/S12859-016-1137-Z},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Ud-DeanHKG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/KeretsuS16,
author = {Seketoulie Keretsu and
Rosy Sarmah},
title = {Weighted edge based clustering to identify protein complexes in protein-protein
interaction networks incorporating gene expression profile},
journal = {Comput. Biol. Chem.},
volume = {65},
pages = {69--79},
year = {2016},
url = {https://doi.org/10.1016/j.compbiolchem.2016.10.001},
doi = {10.1016/J.COMPBIOLCHEM.2016.10.001},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/candc/KeretsuS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ida/VanithaDV16,
author = {C. Devi Arockia Vanitha and
D. Devaraj and
M. Venkatesulu},
title = {Multiclass cancer diagnosis in microarray gene expression profile
using mutual information and Support Vector Machine},
journal = {Intell. Data Anal.},
volume = {20},
number = {6},
pages = {1425--1439},
year = {2016},
url = {https://doi.org/10.3233/IDA-150203},
doi = {10.3233/IDA-150203},
timestamp = {Fri, 26 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ida/VanithaDV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/KibingeOHSSASK16,
author = {Nelson Kibinge and
Naoaki Ono and
Masafumi Horie and
Tetsuo Sato and
Tadao Sugiura and
Md. Altaf{-}Ul{-}Amin and
Akira Saito and
Shigehiko Kanaya},
title = {Integrated pathway-based transcription regulation network mining and
visualization based on gene expression profiles},
journal = {J. Biomed. Informatics},
volume = {61},
pages = {194--202},
year = {2016},
url = {https://doi.org/10.1016/j.jbi.2016.04.002},
doi = {10.1016/J.JBI.2016.04.002},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/KibingeOHSSASK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/JoeN16,
author = {Soobok Joe and
Hojung Nam},
title = {Prognostic factor analysis for breast cancer using gene expression
profiles},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {16},
number = {{S-1}},
pages = {56},
year = {2016},
url = {https://doi.org/10.1186/s12911-016-0292-5},
doi = {10.1186/S12911-016-0292-5},
timestamp = {Sun, 06 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/JoeN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BaggerSSLPSWRP16,
author = {Frederik Otzen Bagger and
Damir Sasivarevic and
Sina Hadi Sohi and
Linea G{\o}ricke Laursen and
Sachin Pundhir and
Casper Kaae S{\o}nderby and
Ole Winther and
Nicolas Rapin and
Bo T. Porse},
title = {BloodSpot: a database of gene expression profiles and transcriptional
programs for healthy and malignant haematopoiesis},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {917--924},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1101},
doi = {10.1093/NAR/GKV1101},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BaggerSSLPSWRP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WuJTAS16,
author = {Chunlei Wu and
Xuefeng Jin and
Ginger Tsueng and
Cyrus Afrasiabi and
Andrew I. Su},
title = {BioGPS: building your own mash-up of gene annotations and expression
profiles},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {313--316},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1104},
doi = {10.1093/NAR/GKV1104},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WuJTAS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/GolkaramHDP16,
author = {Mahdi Golkaram and
Stefan Hellander and
Brian Drawert and
Linda R. Petzold},
title = {Macromolecular Crowding Regulates the Gene Expression Profile by Limiting
Diffusion},
journal = {PLoS Comput. Biol.},
volume = {12},
number = {11},
year = {2016},
url = {https://doi.org/10.1371/journal.pcbi.1005122},
doi = {10.1371/JOURNAL.PCBI.1005122},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/GolkaramHDP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/SotaSTNM16,
author = {Yoshiaki Sota and
Shigeto Seno and
Yoichi Takenaka and
Shinzaburo Noguchi and
Hideo Matsuda},
title = {Comparative Analysis of Transformation Methods for Gene Expression
Profiles in Breast Cancer Datasets},
booktitle = {16th {IEEE} International Conference on Bioinformatics and Bioengineering,
{BIBE} 2016, Taichung, Taiwan, October 31 - November 2, 2016},
pages = {328--333},
publisher = {{IEEE} Computer Society},
year = {2016},
url = {https://doi.org/10.1109/BIBE.2016.51},
doi = {10.1109/BIBE.2016.51},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibe/SotaSTNM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iiaiaai/LeeH16,
author = {Sheng{-}An Lee and
Kuo{-}Chuan Huang},
title = {Differential Expression Profile of Genetic Network for Parkinson's
Disease},
booktitle = {5th {IIAI} International Congress on Advanced Applied Informatics,
{IIAI-AAI} 2016, Kumamoto, Japan, July 10-14, 2016},
pages = {1186--1187},
publisher = {{IEEE} Computer Society},
year = {2016},
url = {https://doi.org/10.1109/IIAI-AAI.2016.202},
doi = {10.1109/IIAI-AAI.2016.202},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iiaiaai/LeeH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AntanaviciuteDC15,
author = {Agne Antanaviciute and
Catherine Daly and
Laura A. Crinnion and
Alexander F. Markham and
Christopher M. Watson and
David T. Bonthron and
Ian M. Carr},
title = {GeneTIER: prioritization of candidate disease genes using tissue-specific
gene expression profiles},
journal = {Bioinform.},
volume = {31},
number = {16},
pages = {2728--2735},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv196},
doi = {10.1093/BIOINFORMATICS/BTV196},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AntanaviciuteDC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HendrickxJBCKK15,
author = {Diana M. Hendrickx and
Danyel G. J. Jennen and
Jacob J. Bried{\'{e}} and
Rachel Cavill and
Theo M. de Kok and
Jos C. S. Kleinjans},
title = {Pattern recognition methods to relate time profiles of gene expression
with phenotypic data: a comparative study},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2115--2122},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv108},
doi = {10.1093/BIOINFORMATICS/BTV108},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HendrickxJBCKK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangYZJ15,
author = {Quan Wang and
Hui Yu and
Zhongming Zhao and
Peilin Jia},
title = {EW{\_}dmGWAS: edge-weighted dense module search for genome-wide association
studies and gene expression profiles},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2591--2594},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv150},
doi = {10.1093/BIOINFORMATICS/BTV150},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangYZJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZulkowerPRGJ15,
author = {Valentin Zulkower and
Michel Page and
Delphine Ropers and
Johannes Geiselmann and
Hidde de Jong},
title = {Robust reconstruction of gene expression profiles from reporter gene
data using linear inversion},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {71--79},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv246},
doi = {10.1093/BIOINFORMATICS/BTV246},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZulkowerPRGJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TaskesenBRR15,
author = {Erdogan Taskesen and
Sepideh Babaei and
Marcel J. T. Reinders and
Jeroen de Ridder},
title = {Integration of gene expression and DNA-methylation profiles improves
molecular subtype classification in acute myeloid leukemia},
journal = {{BMC} Bioinform.},
volume = {16},
number = {{S-4}},
pages = {S5},
year = {2015},
url = {https://doi.org/10.1186/1471-2105-16-S4-S5},
doi = {10.1186/1471-2105-16-S4-S5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TaskesenBRR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TaskesenSR15,
author = {Erdogan Taskesen and
Frank J. T. Staal and
Marcel J. T. Reinders},
title = {An integrated approach of gene expression and DNA-methylation profiles
of {WNT} signaling genes uncovers novel prognostic markers in Acute
Myeloid Leukemia},
journal = {{BMC} Bioinform.},
volume = {16},
number = {{S-4}},
pages = {S4},
year = {2015},
url = {https://doi.org/10.1186/1471-2105-16-S4-S4},
doi = {10.1186/1471-2105-16-S4-S4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TaskesenSR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmmm/ZhangLWSM15,
author = {Yulin Zhang and
Kebo Lv and
Shudong Wang and
Jionglong Su and
Dazhi Meng},
title = {Modeling Gene Networks in\emph{ Saccharomyces cerevisiae} Based on
Gene Expression Profiles},
journal = {Comput. Math. Methods Medicine},
volume = {2015},
pages = {621264:1--621264:10},
year = {2015},
url = {https://doi.org/10.1155/2015/621264},
doi = {10.1155/2015/621264},
timestamp = {Sat, 25 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cmmm/ZhangLWSM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isci/NguyenKCN15,
author = {Thanh Nguyen and
Abbas Khosravi and
Douglas C. Creighton and
Saeid Nahavandi},
title = {Hidden Markov models for cancer classification using gene expression
profiles},
journal = {Inf. Sci.},
volume = {316},
pages = {293--307},
year = {2015},
url = {https://doi.org/10.1016/j.ins.2015.04.012},
doi = {10.1016/J.INS.2015.04.012},
timestamp = {Tue, 09 Jan 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/isci/NguyenKCN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/LimLCW15,
author = {Kevin Lim and
Zhenhua Li and
Kwok Pui Choi and
Limsoon Wong},
title = {A quantum leap in the reproducibility, precision, and sensitivity
of gene expression profile analysis even when sample size is extremely
small},
journal = {J. Bioinform. Comput. Biol.},
volume = {13},
number = {4},
pages = {1550018:1--1550018:18},
year = {2015},
url = {https://doi.org/10.1142/S0219720015500183},
doi = {10.1142/S0219720015500183},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/LimLCW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/netmahib/BellS15,
author = {Francis Bell and
Ahmet Sacan},
title = {Content-based search of gene expression databases using binary fingerprints
of differential expression profiles},
journal = {Netw. Model. Anal. Health Informatics Bioinform.},
volume = {4},
number = {1},
pages = {4},
year = {2015},
url = {https://doi.org/10.1007/s13721-015-0076-3},
doi = {10.1007/S13721-015-0076-3},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/netmahib/BellS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/KimZT15,
author = {Minseung Kim and
Violeta Zorraquino and
Ilias Tagkopoulos},
title = {Microbial Forensics: Predicting Phenotypic Characteristics and Environmental
Conditions from Large-Scale Gene Expression Profiles},
journal = {PLoS Comput. Biol.},
volume = {11},
number = {3},
year = {2015},
url = {https://doi.org/10.1371/journal.pcbi.1004127},
doi = {10.1371/JOURNAL.PCBI.1004127},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/KimZT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KimCCC15,
author = {Jeong{-}Rae Kim and
Sang{-}Mok Choo and
Hyung{-}Seok Choi and
Kwang{-}Hyun Cho},
title = {Identification of Gene Networks with Time Delayed Regulation Based
on Temporal Expression Profiles},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {12},
number = {5},
pages = {1161--1168},
year = {2015},
url = {https://doi.org/10.1109/TCBB.2015.2394312},
doi = {10.1109/TCBB.2015.2394312},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KimCCC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bmei/PanZ15,
author = {Meng Pan and
Jie Zhang},
editor = {Li Bai and
Lipo Wang and
Liangshan Shao and
Jinguang Sun and
Zhiyong Tao and
Sen Lin},
title = {Selecting and combining biomarkers by gene expression profiles for
colon cancer classification},
booktitle = {8th International Conference on Biomedical Engineering and Informatics,
{BMEI} 2015, Shenyang, China, October 14-16, 2015},
pages = {548--553},
publisher = {{IEEE}},
year = {2015},
url = {https://doi.org/10.1109/BMEI.2015.7401565},
doi = {10.1109/BMEI.2015.7401565},
timestamp = {Wed, 16 Oct 2019 14:14:50 +0200},
biburl = {https://dblp.org/rec/conf/bmei/PanZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cikm/JoeN15,
author = {Soobok Joe and
Hojung Nam},
editor = {Doheon Lee and
Min Song and
Karin Verspoor},
title = {Prognostic Factor Analysis for Breast Cancer Using Gene Expression
Profiles},
booktitle = {Proceedings of the {ACM} Ninth International Workshop on Data and
Text Mining in Biomedical Informatics, {DTMBIO} 2015, Melbourne, Australia,
October 23, 2015},
pages = {16},
publisher = {{ACM}},
year = {2015},
url = {https://doi.org/10.1145/2811163.2811170},
doi = {10.1145/2811163.2811170},
timestamp = {Thu, 17 Feb 2022 16:43:16 +0100},
biburl = {https://dblp.org/rec/conf/cikm/JoeN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangWHWWWW14,
author = {Ningtao Wang and
Yaqun Wang and
Han Hao and
Luojun Wang and
Zhong Wang and
Jianxin Wang and
Rongling Wu},
title = {A bi-Poisson model for clustering gene expression profiles by RNA-seq},
journal = {Briefings Bioinform.},
volume = {15},
number = {4},
pages = {534--541},
year = {2014},
url = {https://doi.org/10.1093/bib/bbt029},
doi = {10.1093/BIB/BBT029},
timestamp = {Tue, 14 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangWHWWWW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/OellrichS14,
author = {Anika Oellrich and
Damian Smedley},
title = {Linking tissues to phenotypes using gene expression profiles},
journal = {Database J. Biol. Databases Curation},
volume = {2014},
year = {2014},
url = {https://doi.org/10.1093/database/bau017},
doi = {10.1093/DATABASE/BAU017},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/OellrichS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ZhangYCXMM14,
author = {Qingzhou Zhang and
Bo Yang and
Xujiao Chen and
Jing Xu and
Changlin Mei and
Zhiguo Mao},
title = {Renal Gene Expression Database {(RGED):} a relational database of
gene expression profiles in kidney disease},
journal = {Database J. Biol. Databases Curation},
volume = {2014},
year = {2014},
url = {https://doi.org/10.1093/database/bau092},
doi = {10.1093/DATABASE/BAU092},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/ZhangYCXMM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuangZWLWLJG14,
author = {Yue Huang and
Xiaodong Zhu and
Lishi Wang and
Xiaoyun Liu and
Robert W. Williams and
Lu Lu and
Yan Jiao and
Weikuan Gu},
title = {Genome wide analysis of sex difference in gene expression profiles
of bone formations},
journal = {{BMC} Bioinform.},
volume = {15},
number = {{S-10}},
pages = {P3},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-S10-P3},
doi = {10.1186/1471-2105-15-S10-P3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuangZWLWLJG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LenchikCKG14,
author = {Nataliya I. Lenchik and
Hao Chen and
Dorothy N. Kakoola and
Ivan Gerling},
title = {Differences in gene expression profiles between individual islets
from case {\#}6213},
journal = {{BMC} Bioinform.},
volume = {15},
number = {{S-10}},
pages = {P18},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-S10-P18},
doi = {10.1186/1471-2105-15-S10-P18},
timestamp = {Wed, 22 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LenchikCKG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RajK14,
author = {Vinay Raj and
Susan Kadlubar},
title = {Identification of gene expression profiles associated with prognostic
groups of patients with Merkel cell carcinoma},
journal = {{BMC} Bioinform.},
volume = {15},
number = {{S-10}},
pages = {P20},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-S10-P20},
doi = {10.1186/1471-2105-15-S10-P20},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RajK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PatilN14,
author = {Ashwini Patil and
Kenta Nakai},
title = {TimeXNet: Identifying active gene sub-networks using time-course gene
expression profiles},
journal = {{BMC} Syst. Biol.},
volume = {8},
number = {{S-4}},
pages = {S2},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-S4-S2},
doi = {10.1186/1752-0509-8-S4-S2},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PatilN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmmm/LiuCKHCH14,
author = {Li{-}Yu Daisy Liu and
Li{-}Yun Chang and
Wen{-}Hung Kuo and
Hsiao{-}Lin Hwa and
King{-}Jen Chang and
Fon{-}Jou Hsieh},
title = {A Supervised Network Analysis on Gene Expression Profiles of Breast
Tumors Predicts a 41-Gene Prognostic Signature of the Transcription
Factor \emph{MYB} across Molecular Subtypes},
journal = {Comput. Math. Methods Medicine},
volume = {2014},
pages = {813067:1--813067:19},
year = {2014},
url = {https://doi.org/10.1155/2014/813067},
doi = {10.1155/2014/813067},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cmmm/LiuCKHCH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/csda/CoffeyHH14,
author = {Norma Bargary and
John Hinde and
E. Holian},
title = {Clustering longitudinal profiles using P-splines and mixed effects
models applied to time-course gene expression data},
journal = {Comput. Stat. Data Anal.},
volume = {71},
pages = {14--29},
year = {2014},
url = {https://doi.org/10.1016/j.csda.2013.04.001},
doi = {10.1016/J.CSDA.2013.04.001},
timestamp = {Mon, 23 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/csda/CoffeyHH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijon/FanCSW14,
author = {Weiwei Fan and
Bolin Chen and
Gopalan Selvaraj and
Fang{-}Xiang Wu},
title = {Discovering biological patterns from short time-series gene expression
profiles with integrating {PPI} data},
journal = {Neurocomputing},
volume = {145},
pages = {3--13},
year = {2014},
url = {https://doi.org/10.1016/j.neucom.2014.02.068},
doi = {10.1016/J.NEUCOM.2014.02.068},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijon/FanCSW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DittmarMMGV14,
author = {W. James Dittmar and
Lauren McIver and
Pawel Michalak and
Harold R. Garner and
Gregorio Valdez},
title = {EvoCor: a platform for predicting functionally related genes using
phylogenetic and expression profiles},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Webserver-Issue},
pages = {72--75},
year = {2014},
url = {https://doi.org/10.1093/nar/gku442},
doi = {10.1093/NAR/GKU442},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DittmarMMGV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuCYWLLH14,
author = {Zhiwen Yu and
Hongsheng Chen and
Jane You and
Hau{-}San Wong and
Jiming Liu and
Le Li and
Guoqiang Han},
title = {Double Selection Based Semi-Supervised Clustering Ensemble for Tumor
Clustering from Gene Expression Profiles},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {11},
number = {4},
pages = {727--740},
year = {2014},
url = {https://doi.org/10.1109/TCBB.2014.2315996},
doi = {10.1109/TCBB.2014.2315996},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YuCYWLLH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/KimWZ14,
author = {Chang Sik Kim and
Qing Wen and
Shu{-}Dong Zhang},
editor = {Huiru Jane Zheng and
Werner Dubitzky and
Xiaohua Hu and
Jin{-}Kao Hao and
Daniel P. Berrar and
Kwang{-}Hyun Cho and
Yadong Wang and
David R. Gilbert},
title = {Integrative analysis of chemo-transcriptomic profiles for drug-feature
specific gene expression signatures},
booktitle = {2014 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2014, Belfast, United Kingdom, November 2-5, 2014},
pages = {113--118},
publisher = {{IEEE} Computer Society},
year = {2014},
url = {https://doi.org/10.1109/BIBM.2014.6999138},
doi = {10.1109/BIBM.2014.6999138},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/KimWZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icpr/LiYLYWH14,
author = {Le Li and
Zhiwen Yu and
Jiming Liu and
Jane You and
Hau{-}San Wong and
Guoqiang Han},
title = {Multi-view Based AdaBoost Classifier Ensemble for Class Prediction
from Gene Expression Profiles},
booktitle = {22nd International Conference on Pattern Recognition, {ICPR} 2014,
Stockholm, Sweden, August 24-28, 2014},
pages = {178--183},
publisher = {{IEEE} Computer Society},
year = {2014},
url = {https://doi.org/10.1109/ICPR.2014.40},
doi = {10.1109/ICPR.2014.40},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icpr/LiYLYWH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/ca/Quon13,
author = {Gerald T. Quon},
title = {Probabilistic Models for the Analysis of Gene Expression Profiles},
school = {University of Toronto, Canada},
year = {2013},
url = {http://hdl.handle.net/1807/36295},
timestamp = {Fri, 29 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/ca/Quon13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenSZ13,
author = {Xiaowei Chen and
Frank J. Slack and
Hongyu Zhao},
title = {Joint analysis of expression profiles from multiple cancers improves
the identification of microRNA-gene interactions},
journal = {Bioinform.},
volume = {29},
number = {17},
pages = {2137--2145},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt341},
doi = {10.1093/BIOINFORMATICS/BTT341},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenSZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LaguninIRFP13,
author = {Alexey Lagunin and
Sergey Ivanov and
Anastasia V. Rudik and
Dmitry Filimonov and
Vladimir Poroikov},
title = {DIGEP-Pred: web service for \emph{in silico} prediction of drug-induced
gene expression profiles based on structural formula},
journal = {Bioinform.},
volume = {29},
number = {16},
pages = {2062--2063},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt322},
doi = {10.1093/BIOINFORMATICS/BTT322},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LaguninIRFP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeKZT13,
author = {Young{-}Suk Lee and
Arjun Krishnan and
Qian Zhu and
Olga G. Troyanskaya},
title = {Ontology-aware classification of tissue and cell-type signals in gene
expression profiles across platforms and technologies},
journal = {Bioinform.},
volume = {29},
number = {23},
pages = {3036--3044},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt529},
doi = {10.1093/BIOINFORMATICS/BTT529},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeKZT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimOK13,
author = {Jaehee Kim and
Robert Todd Ogden and
Haseong Kim},
title = {A method to identify differential expression profiles of time-course
gene data with Fourier transformation},
journal = {{BMC} Bioinform.},
volume = {14},
pages = {310},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-310},
doi = {10.1186/1471-2105-14-310},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimOK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhongWPCL13,
author = {Yi Zhong and
Ying{-}Wooi Wan and
Kaifang Pang and
Lionel M. L. Chow and
Zhandong Liu},
title = {Digital sorting of complex tissues for cell type-specific gene expression
profiles},
journal = {{BMC} Bioinform.},
volume = {14},
pages = {89},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-89},
doi = {10.1186/1471-2105-14-89},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhongWPCL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cbm/Garcia-GomezGEFS13,
author = {Juan Miguel Garc{\'{\i}}a{-}G{\'{o}}mez and
Juan G{\'{o}}mez{-}Sanch{\'{\i}}s and
Pablo Escandell{-}Montero and
Elies Fuster{-}Garc{\'{\i}}a and
Emilio Soria{-}Olivas},
title = {Sparse Manifold Clustering and Embedding to discriminate gene expression
profiles of glioblastoma and meningioma tumors},
journal = {Comput. Biol. Medicine},
volume = {43},
number = {11},
pages = {1863--1869},
year = {2013},
url = {https://doi.org/10.1016/j.compbiomed.2013.08.025},
doi = {10.1016/J.COMPBIOMED.2013.08.025},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cbm/Garcia-GomezGEFS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmpb/SunL13,
author = {Xiaoyong Sun and
Jun Li},
title = {pairheatmap: Comparing expression profiles of gene groups in heatmaps},
journal = {Comput. Methods Programs Biomed.},
volume = {112},
number = {3},
pages = {599--606},
year = {2013},
url = {https://doi.org/10.1016/j.cmpb.2013.07.010},
doi = {10.1016/J.CMPB.2013.07.010},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cmpb/SunL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijdmb/BaskaranKK13,
author = {N. Baskaran and
Chee Keong Kwoh and
Kam M. Hui},
title = {Comprehensive detection of cancer gene expression profiles and gene
networks are impacted by the choice of pre-processing algorithm and
gene-selection method},
journal = {Int. J. Data Min. Bioinform.},
volume = {7},
number = {4},
pages = {416--435},
year = {2013},
url = {https://doi.org/10.1504/IJDMB.2013.054228},
doi = {10.1504/IJDMB.2013.054228},
timestamp = {Fri, 28 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijdmb/BaskaranKK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PizarroHLH13,
author = {Angel D. Pizarro and
Katharina Hayer and
Nicholas F. Lahens and
John B. Hogenesch},
title = {CircaDB: a database of mammalian circadian gene expression profiles},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1009--1013},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1161},
doi = {10.1093/NAR/GKS1161},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PizarroHLH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ChengUGW13,
author = {Chao Cheng and
Matthew Ung and
Gavin D. Grant and
Michael L. Whitfield},
title = {Transcription Factor Binding Profiles Reveal Cyclic Expression of
Human Protein-coding Genes and Non-coding RNAs},
journal = {PLoS Comput. Biol.},
volume = {9},
number = {7},
year = {2013},
url = {https://doi.org/10.1371/journal.pcbi.1003132},
doi = {10.1371/JOURNAL.PCBI.1003132},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/ChengUGW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/LiCWWP13,
author = {Min Li and
Weijie Chen and
Jianxin Wang and
Fang{-}Xiang Wu and
Yi Pan},
editor = {Guo{-}Zheng Li and
Sunghoon Kim and
Michael Hughes and
Geoffrey J. McLachlan and
Hongye Sun and
Xiaohua Hu and
Habtom W. Ressom and
Baoyan Liu and
Michael N. Liebman},
title = {Identifying dynamic protein complexes based on gene expression profiles
and {PPI} networks},
booktitle = {2013 {IEEE} International Conference on Bioinformatics and Biomedicine,
Shanghai, China, December 18-21, 2013},
pages = {5},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/BIBM.2013.6732610},
doi = {10.1109/BIBM.2013.6732610},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/LiCWWP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/daeng/AlshamlanBA13,
author = {Hala M. Alshamlan and
Ghada Badr and
Yousef A. Alohali},
editor = {Tutut Herawan and
Mustafa Mat Deris and
Jemal H. Abawajy},
title = {A Comparative Study of Cancer Classification Methods Using Microarray
Gene Expression Profile},
booktitle = {Proceedings of the First International Conference on Advanced Data
and Information Engineering, DaEng 2013, Kuala Lumpur, Malaysia, December
16-18, 2013},
series = {Lecture Notes in Electrical Engineering},
volume = {285},
pages = {389--398},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-981-4585-18-7\_44},
doi = {10.1007/978-981-4585-18-7\_44},
timestamp = {Mon, 28 Aug 2017 15:32:32 +0200},
biburl = {https://dblp.org/rec/conf/daeng/AlshamlanBA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/fuzzIEEE/HuangCCYS13,
author = {Sheng{-}Yao Huang and
Yi{-}Cheng Chen and
I{-}Fang Chung and
Feng{-}Yi Yang and
Chun{-}Hung Su},
title = {Finding marker genes from high dimensional expression profiles: Divide-and-conquer
exploiting a fuzzy rule based framework},
booktitle = {{FUZZ-IEEE} 2013, {IEEE} International Conference on Fuzzy Systems,
Hyderabad, India, 7-10 July, 2013, Proceedings},
pages = {1--6},
publisher = {{IEEE}},
year = {2013},
url = {https://doi.org/10.1109/FUZZ-IEEE.2013.6622529},
doi = {10.1109/FUZZ-IEEE.2013.6622529},
timestamp = {Wed, 16 Oct 2019 14:14:52 +0200},
biburl = {https://dblp.org/rec/conf/fuzzIEEE/HuangCCYS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmla/Hang13,
author = {X. Hang},
title = {Gene Expression Profile Classification Using Random Projection and
Sparse Representation},
booktitle = {12th International Conference on Machine Learning and Applications,
{ICMLA} 2013, Miami, FL, USA, December 4-7, 2013, Volume 2},
pages = {411--414},
publisher = {{IEEE}},
year = {2013},
url = {https://doi.org/10.1109/ICMLA.2013.157},
doi = {10.1109/ICMLA.2013.157},
timestamp = {Wed, 16 Oct 2019 14:14:53 +0200},
biburl = {https://dblp.org/rec/conf/icmla/Hang13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iconip/YunGNS13,
author = {Jiang Yun and
Xie Guocheng and
Chen Na and
Chen Shan},
editor = {Minho Lee and
Akira Hirose and
Zeng{-}Guang Hou and
Rhee Man Kil},
title = {A New Gene Expression Profiles Classifying Approach Based on Neighborhood
Rough Set and Probabilistic Neural Networks Ensemble},
booktitle = {Neural Information Processing - 20th International Conference, {ICONIP}
2013, Daegu, Korea, November 3-7, 2013. Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {8227},
pages = {484--489},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-42042-9\_60},
doi = {10.1007/978-3-642-42042-9\_60},
timestamp = {Tue, 14 May 2019 10:00:42 +0200},
biburl = {https://dblp.org/rec/conf/iconip/YunGNS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwann/Aguiar-PulidoSRED13,
author = {Vanessa Aguiar{-}Pulido and
Victoria Su{\'{a}}rez{-}Ulloa and
Daniel Rivero and
Jos{\'{e}} M. Eir{\'{\i}}n{-}L{\'{o}}pez and
Juli{\'{a}}n Dorado},
editor = {Ignacio Rojas and
Gonzalo Joya Caparr{\'{o}}s and
Joan Cabestany},
title = {Clustering of Gene Expression Profiles Applied to Marine Research},
booktitle = {Advances in Computational Intelligence - 12th International Work-Conference
on Artificial Neural Networks, {IWANN} 2013, Puerto de la Cruz, Tenerife,
Spain, June 12-14, 2013, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {7902},
pages = {453--462},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-38679-4\_45},
doi = {10.1007/978-3-642-38679-4\_45},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iwann/Aguiar-PulidoSRED13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1305-5750,
author = {Khalid Raza and
Rajni Jaiswal},
title = {Reconstruction and Analysis of Cancer-specific Gene Regulatory Networks
from Gene Expression Profiles},
journal = {CoRR},
volume = {abs/1305.5750},
year = {2013},
url = {http://arxiv.org/abs/1305.5750},
eprinttype = {arXiv},
eprint = {1305.5750},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1305-5750.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HuangSL12,
author = {Norman Huang and
Parantu K. Shah and
Cheng Li},
title = {Lessons from a decade of integrating cancer copy number alterations
with gene expression profiles},
journal = {Briefings Bioinform.},
volume = {13},
number = {3},
pages = {305--316},
year = {2012},
url = {https://doi.org/10.1093/bib/bbr056},
doi = {10.1093/BIB/BBR056},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/HuangSL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BravoPMIL12,
author = {H{\'{e}}ctor Corrada Bravo and
Vasyl Pihur and
Matthew N. McCall and
Rafael A. Irizarry and
Jeffrey T. Leek},
title = {Gene expression anti-profiles as a basis for accurate universal cancer
signatures},
journal = {{BMC} Bioinform.},
volume = {13},
pages = {272},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-272},
doi = {10.1186/1471-2105-13-272},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BravoPMIL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangNM12,
author = {Kui Wang and
Shu{-}Kay Ng and
Geoffrey J. McLachlan},
title = {Clustering of time-course gene expression profiles using normal mixture
models with autoregressive random effects},
journal = {{BMC} Bioinform.},
volume = {13},
pages = {300},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-300},
doi = {10.1186/1471-2105-13-300},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangNM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LaviDS12,
author = {Ofer Lavi and
Gideon Dror and
Ron Shamir},
title = {Network-Induced Classification Kernels for Gene Expression Profile
Analysis},
journal = {J. Comput. Biol.},
volume = {19},
number = {6},
pages = {694--709},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0065},
doi = {10.1089/CMB.2012.0065},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/LaviDS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BelcastroGSSDOB12,
author = {Vincenzo Belcastro and
Francesco Gregoretti and
Velia Siciliano and
Michele Santoro and
Giovanni D'Angelo and
Gennaro Oliva and
Diego di Bernardo},
title = {Reverse Engineering and Analysis of Genome-Wide Gene Regulatory Networks
from Gene Expression Profiles Using High-Performance Computing},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {668--678},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.60},
doi = {10.1109/TCBB.2011.60},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BelcastroGSSDOB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuLYWH12,
author = {Zhiwen Yu and
Le Li and
Jane You and
Hau{-}San Wong and
Guoqiang Han},
title = {SC{\({^3}\)}: Triple Spectral Clustering-Based Consensus Clustering
Framework for Class Discovery from Cancer Gene Expression Profiles},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1751--1765},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.108},
doi = {10.1109/TCBB.2012.108},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YuLYWH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tsmc/MitraG12,
author = {Sushmita Mitra and
Sampreeti Ghosh},
title = {Feature Selection and Clustering of Gene Expression Profiles Using
Biological Knowledge},
journal = {{IEEE} Trans. Syst. Man Cybern. Part {C}},
volume = {42},
number = {6},
pages = {1590--1599},
year = {2012},
url = {https://doi.org/10.1109/TSMCC.2012.2209416},
doi = {10.1109/TSMCC.2012.2209416},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tsmc/MitraG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/Balov12,
author = {Nikolay Balov},
title = {A discrete Bayesian network framework for discrimination of gene expression
profiles},
booktitle = {2012 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2012, Philadelphia, PA, USA, October 4-7, 2012},
pages = {1--7},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/BIBM.2012.6392692},
doi = {10.1109/BIBM.2012.6392692},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/Balov12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/KimB12,
author = {Hyunsoo Kim and
Markus Bredel},
title = {Predicting survial by cancer pathway gene expression profiles in the
{TCGA}},
booktitle = {2012 {IEEE} International Conference on Bioinformatics and Biomedicine
Workshops, {BIBMW} 2012, Philadelphia, USA, October 4-7, 2012},
pages = {872--875},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/BIBMW.2012.6470256},
doi = {10.1109/BIBMW.2012.6470256},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/KimB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/LiYWN12,
author = {Xutao Li and
Yunming Ye and
Qingyao Wu and
Michael K. Ng},
title = {MultiFacTV: Finding modules from higher-order gene expression profiles
with time dimension},
booktitle = {2012 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2012, Philadelphia, PA, USA, October 4-7, 2012},
pages = {1--6},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/BIBM.2012.6392641},
doi = {10.1109/BIBM.2012.6392641},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/LiYWN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmla/WangOZL12,
author = {Dingding Wang and
Mitsunori Ogihara and
Erliang Zeng and
Tao Li},
title = {Combining Gene Expression Profiles and Protein-Protein Interactions
for Identifying Functional Modules},
booktitle = {11th International Conference on Machine Learning and Applications,
ICMLA, Boca Raton, FL, USA, December 12-15, 2012. Volume 1},
pages = {114--119},
publisher = {{IEEE}},
year = {2012},
url = {https://doi.org/10.1109/ICMLA.2012.28},
doi = {10.1109/ICMLA.2012.28},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icmla/WangOZL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ieaaie/YuCYLH12,
author = {Zhiwen Yu and
Hantao Chen and
Jane You and
Le Li and
Guoqiang Han},
editor = {He Jiang and
Wei Ding and
Moonis Ali and
Xindong Wu},
title = {{SOM} 2 {CE:} Double Self-Organizing Map Based Cluster Ensemble Framework
and its Application in Cancer Gene Expression Profiles},
booktitle = {Advanced Research in Applied Artificial Intelligence - 25th International
Conference on Industrial Engineering and Other Applications of Applied
Intelligent Systems, {IEA/AIE} 2012, Dalian, China, June 9-12, 2012.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7345},
pages = {351--360},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-31087-4\_37},
doi = {10.1007/978-3-642-31087-4\_37},
timestamp = {Sat, 09 Apr 2022 12:40:54 +0200},
biburl = {https://dblp.org/rec/conf/ieaaie/YuCYLH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wob/JaskowiakCC12,
author = {Pablo A. Jaskowiak and
Ricardo J. G. B. Campello and
Ivan G. Costa},
editor = {Marc{\'{\i}}lio Carlos Pereira de Souto and
Maricel G. Kann},
title = {Evaluating Correlation Coefficients for Clustering Gene Expression
Profiles of Cancer},
booktitle = {Advances in Bioinformatics and Computational Biology - 7th Brazilian
Symposium on Bioinformatics, {BSB} 2012, Campo Grande, Brazil, August
15-17, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7409},
pages = {120--131},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-31927-3\_11},
doi = {10.1007/978-3-642-31927-3\_11},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wob/JaskowiakCC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/basesearch/Wu11b,
author = {Di Wu},
title = {Finding hidden relationships between gene expression profiles with
application to breast cancer biology},
school = {University of Melbourne, Australia},
year = {2011},
url = {https://hdl.handle.net/11343/36278},
timestamp = {Wed, 04 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/basesearch/Wu11b.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/KilpinenOK11,
author = {Sami Kilpinen and
Kalle A. Ojala and
Olli{-}P. Kallioniemi},
title = {Alignment of gene expression profiles from test samples against a
reference database: New method for context-specific interpretation
of microarray data},
journal = {BioData Min.},
volume = {4},
pages = {5},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-5},
doi = {10.1186/1756-0381-4-5},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/KilpinenOK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OhKBT11,
author = {Sunghee Oh and
Dongwan D. Kang and
Guy N. Brock and
George C. Tseng},
title = {Biological impact of missing-value imputation on downstream analyses
of gene expression profiles},
journal = {Bioinform.},
volume = {27},
number = {1},
pages = {78--86},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq613},
doi = {10.1093/BIOINFORMATICS/BTQ613},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OhKBT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SeifertSSG11,
author = {Michael Seifert and
Marc Strickert and
Alexander Schliep and
Ivo Grosse},
title = {Exploiting prior knowledge and gene distances in the analysis of tumor
expression profiles with extended Hidden Markov Models},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1645--1652},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr199},
doi = {10.1093/BIOINFORMATICS/BTR199},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SeifertSSG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SilvaWDBMM11,
author = {A. Sofia Silva and
Shona H. Wood and
Sipko van Dam and
Sven Berres and
Anne McArdle and
Jo{\~{a}}o Pedro de Magalh{\~{a}}es},
title = {Gathering insights on disease etiology from gene expression profiles
of healthy tissues},
journal = {Bioinform.},
volume = {27},
number = {23},
pages = {3300--3305},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr559},
doi = {10.1093/BIOINFORMATICS/BTR559},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SilvaWDBMM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BensoCPSH11,
author = {Alfredo Benso and
Stefano Di Carlo and
Gianfranco Politano and
Alessandro Savino and
Hafeez Hafeezurrehman},
title = {Building gene expression profile classifiers with a simple and efficient
rejection option in {R}},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-13}},
pages = {S3},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S13-S3},
doi = {10.1186/1471-2105-12-S13-S3},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BensoCPSH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangZ11a,
author = {Zhihua Zhang and
Michael Q. Zhang},
title = {Histone modification profiles are predictive for tissue/cell-type
specific expression of both protein-coding and microRNA genes},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {155},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-155},
doi = {10.1186/1471-2105-12-155},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangZ11a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangJCGW11,
author = {Luwen Zhang and
Xiangchun Ju and
Yumin Cheng and
Xiuyun Guo and
Tieqiao Wen},
title = {Identifying Tmem59 related gene regulatory network of mouse neural
stem cell from a compendium of expression profiles},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {152},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-152},
doi = {10.1186/1752-0509-5-152},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangJCGW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/eswa/ZainuddinO11,
author = {Zarita Zainuddin and
Pauline Ong},
title = {Reliable multiclass cancer classification of microarray gene expression
profiles using an improved wavelet neural network},
journal = {Expert Syst. Appl.},
volume = {38},
number = {11},
pages = {13711--13722},
year = {2011},
url = {https://doi.org/10.1016/j.eswa.2011.04.164},
doi = {10.1016/J.ESWA.2011.04.164},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/eswa/ZainuddinO11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/LicameleG11,
author = {Louis Licamele and
Lise Getoor},
title = {A Method for the Detection of Meaningful and Reproducible Group Signatures
from Gene Expression Profiles},
journal = {J. Bioinform. Comput. Biol.},
volume = {9},
number = {3},
pages = {431--451},
year = {2011},
url = {https://doi.org/10.1142/S0219720011005598},
doi = {10.1142/S0219720011005598},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/LicameleG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jclinbioinf/BhattacharyaTSDSBSRM11,
author = {Soumyaroop Bhattacharya and
Shivraj Tyagi and
Sorachai Srisuma and
Dawn L. DeMeo and
Steven Shapiro and
Raphael Bueno and
Edwin K. Silverman and
John J. Reilly and
Thomas J. Mariani},
title = {Peripheral blood gene expression profiles in {COPD} subjects},
journal = {J. Clin. Bioinform.},
volume = {1},
pages = {12},
year = {2011},
url = {https://doi.org/10.1186/2043-9113-1-12},
doi = {10.1186/2043-9113-1-12},
timestamp = {Thu, 02 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jclinbioinf/BhattacharyaTSDSBSRM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/HsiaoCSHCH11,
author = {Tzu{-}Hung Hsiao and
Hung{-}I Harry Chen and
Patricia C. Sanchez{-}Diaz and
Jaclyn Y. Hung and
Yidong Chen and
Yufei Huang},
title = {Gene sets enrichment analysis of miRNA expression profile},
booktitle = {2011 {IEEE} International Conference on Bioinformatics and Biomedicine
Workshops, {BIBMW} 2011, Atlanta, GA, USA, November 12-15, 2011},
pages = {449--454},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/BIBMW.2011.6112413},
doi = {10.1109/BIBMW.2011.6112413},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/HsiaoCSHCH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bmei/WangWDZ11,
author = {Chun{-}E. Wang and
Rui{-}Kai Wang and
Jin{-}Ying Dai and
Tuan{-}Jie Zhao},
editor = {Yongsheng Ding and
Yonghong Peng and
Riyi Shi and
Kuangrong Hao and
Lipo Wang},
title = {Phylogeny and expression profile analyses of oleate- and linoleate-desaturase
genes in soybean},
booktitle = {4th International Conference on Biomedical Engineering and Informatics,
{BMEI} 2011, Shanghai, China, October 15-17, 2011},
pages = {1584--1587},
publisher = {{IEEE}},
year = {2011},
url = {https://doi.org/10.1109/BMEI.2011.6098571},
doi = {10.1109/BMEI.2011.6098571},
timestamp = {Wed, 16 Oct 2019 14:14:50 +0200},
biburl = {https://dblp.org/rec/conf/bmei/WangWDZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gensips/HsuSHBDC11,
author = {Fang{-}Han Hsu and
Erchin Serpedin and
Tzu{-}Hung Hsiao and
Alexander J. R. Bishop and
Edward R. Dougherty and
Yidong Chen},
title = {Identifying genes associated with chemotherapy response in ovarian
carcinomas based on {DNA} copy number and expression profiles},
booktitle = {2011 {IEEE} International Workshop on Genomic Signal Processing and
Statistics, GENSiPS 2011, San Antonio, TX, USA, December 4-6, 2011},
pages = {46--49},
publisher = {{IEEE}},
year = {2011},
url = {https://doi.org/10.1109/GENSiPS.2011.6169438},
doi = {10.1109/GENSIPS.2011.6169438},
timestamp = {Wed, 16 Oct 2019 14:14:54 +0200},
biburl = {https://dblp.org/rec/conf/gensips/HsuSHBDC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icic/WangLW11,
author = {Shu{-}Lin Wang and
Min Li and
Hongqiang Wang},
editor = {De{-}Shuang Huang and
Yong Gan and
Prashan Premaratne and
Kyungsook Han},
title = {Using 2D Principal Component Analysis to Reduce Dimensionality of
Gene Expression Profiles for Tumor Classification},
booktitle = {Bio-Inspired Computing and Applications - 7th International Conference
on Intelligent Computing, {ICIC} 2011, Zhengzhou,China, August 11-14.
2011, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {6840},
pages = {588--595},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-24553-4\_78},
doi = {10.1007/978-3-642-24553-4\_78},
timestamp = {Tue, 14 May 2019 10:00:53 +0200},
biburl = {https://dblp.org/rec/conf/icic/WangLW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PratFLL11,
author = {Yosef Prat and
Menachem Fromer and
Michal Linial and
Nathan Linial},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Geometric Interpretation of Gene Expression by Sparse Reconstruction
of Transcript Profiles},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {355--357},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_33},
doi = {10.1007/978-3-642-20036-6\_33},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PratFLL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/shapes/LachapelleB11,
author = {Aitana Morton de Lachapelle and
Sven Bergmann},
editor = {Janna Hastings and
Oliver Kutz and
Mehul Bhatt and
Stefano Borgo},
title = {A New Scaling Measure Quantifies the Conservation of Proportions of
Gene Expression Profiles in Developing Organic Shapes},
booktitle = {Proceedings of the First Interdisciplinary Workshop on SHAPES, Karlsruhe,
Germany, September 27, 2011},
series = {{CEUR} Workshop Proceedings},
volume = {812},
publisher = {CEUR-WS.org},
year = {2011},
url = {https://ceur-ws.org/Vol-812/paper11.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:19 +0100},
biburl = {https://dblp.org/rec/conf/shapes/LachapelleB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1109-1062,
author = {G. Victo Sudha George and
Velankanni Cyril Raj},
title = {Review on Feature Selection Techniques and the Impact of {SVM} for
Cancer Classification using Gene Expression Profile},
journal = {CoRR},
volume = {abs/1109.1062},
year = {2011},
url = {http://arxiv.org/abs/1109.1062},
eprinttype = {arXiv},
eprint = {1109.1062},
timestamp = {Fri, 10 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1109-1062.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NiidaIYNFSM10,
author = {Atsushi Niida and
Seiya Imoto and
Rui Yamaguchi and
Masao Nagasaki and
Andr{\'{e}} Fujita and
Teppei Shimamura and
Satoru Miyano},
title = {Model-free unsupervised gene set screening based on information enrichment
in expression profiles},
journal = {Bioinform.},
volume = {26},
number = {24},
pages = {3090--3097},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq592},
doi = {10.1093/BIOINFORMATICS/BTQ592},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NiidaIYNFSM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SubhaniRNB10,
author = {Numanul Subhani and
Luis Rueda and
Alioune Ngom and
Conrad J. Burden},
title = {Multiple gene expression profile alignment for microarray time-series
data clustering},
journal = {Bioinform.},
volume = {26},
number = {18},
pages = {2281--2288},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq422},
doi = {10.1093/BIOINFORMATICS/BTQ422},
timestamp = {Wed, 08 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SubhaniRNB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuM10,
author = {Ping{-}Shi Wu and
Hans{-}Georg M{\"{u}}ller},
title = {Functional embedding for the classification of gene expression profiles},
journal = {Bioinform.},
volume = {26},
number = {4},
pages = {509--517},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btp711},
doi = {10.1093/BIOINFORMATICS/BTP711},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/ReverterVS10,
author = {Ferran Reverter and
Esteban Vegas and
Pedro S{\'{a}}nchez},
title = {Mining Gene Expression Profiles: An Integrated Implementation of Kernel
Principal Component Analysis and Singular Value Decomposition},
journal = {Genom. Proteom. Bioinform.},
volume = {8},
number = {3},
pages = {200--210},
year = {2010},
url = {https://doi.org/10.1016/S1672-0229(10)60022-8},
doi = {10.1016/S1672-0229(10)60022-8},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/ReverterVS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijbra/DhawanSD10,
author = {Manik Dhawan and
Sudarshan Selvaraja and
Zhong{-}Hui Duan},
title = {Application of committee kNN classifiers for gene expression profile
classification},
journal = {Int. J. Bioinform. Res. Appl.},
volume = {6},
number = {4},
pages = {344--352},
year = {2010},
url = {https://doi.org/10.1504/IJBRA.2010.035998},
doi = {10.1504/IJBRA.2010.035998},
timestamp = {Fri, 11 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijbra/DhawanSD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ivs/YouFC10,
author = {Qian You and
Shiaofen Fang and
Jake Yue Chen},
title = {GeneTerrain: Visual exploration of differential gene expression profiles
organized in native biomolecular interaction networks},
journal = {Inf. Vis.},
volume = {9},
number = {1},
pages = {1--12},
year = {2010},
url = {https://doi.org/10.1057/ivs.2008.3},
doi = {10.1057/IVS.2008.3},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ivs/YouFC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcsc/WangGL10,
author = {Shulin Wang and
Jie Gui and
Xueling Li},
title = {Factor Analysis for Cross-Platform Tumor Classification Based on Gene
Expression Profiles},
journal = {J. Circuits Syst. Comput.},
volume = {19},
number = {1},
pages = {243--258},
year = {2010},
url = {https://doi.org/10.1142/S0218126610006074},
doi = {10.1142/S0218126610006074},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcsc/WangGL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MulderKB10,
author = {Wim De Mulder and
Martin Kuiper and
Ren{\'{e}} K. Boel},
title = {Clustering of gene expression profiles: creating initialization-independent
clusterings by eliminating unstable genes},
journal = {J. Integr. Bioinform.},
volume = {7},
number = {3},
year = {2010},
url = {https://doi.org/10.2390/biecoll-jib-2010-134},
doi = {10.2390/BIECOLL-JIB-2010-134},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/MulderKB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jmma/FersiniMAM10,
author = {Elisabetta Fersini and
Enza Messina and
Francesco Archetti and
Cristina E. Manfredotti},
title = {Combining Gene Expression Profiles and Drug Activity Patterns Analysis:
{A} Relational Clustering Approach},
journal = {J. Math. Model. Algorithms},
volume = {9},
number = {3},
pages = {275--289},
year = {2010},
url = {https://doi.org/10.1007/s10852-010-9140-2},
doi = {10.1007/S10852-010-9140-2},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jmma/FersiniMAM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/JingNL10,
author = {Liping Jing and
Michael K. Ng and
Ying Liu},
title = {Construction of gene networks with hybrid approach from expression
profile and gene ontology},
journal = {{IEEE} Trans. Inf. Technol. Biomed.},
volume = {14},
number = {1},
pages = {107--118},
year = {2010},
url = {https://doi.org/10.1109/TITB.2009.2033056},
doi = {10.1109/TITB.2009.2033056},
timestamp = {Wed, 03 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/titb/JingNL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/WuZ10,
author = {Fang{-}Xiang Wu and
Wen{-}Jun Zhang},
title = {Dynamic-model-based method for selecting significantly expressed genes
from time-course expression profiles},
journal = {{IEEE} Trans. Inf. Technol. Biomed.},
volume = {14},
number = {1},
pages = {16--22},
year = {2010},
url = {https://doi.org/10.1109/TITB.2009.2025125},
doi = {10.1109/TITB.2009.2025125},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/titb/WuZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/AnSXMO10,
author = {Li An and
Desmond J. Smith and
Hongbo M. Xie and
Vasileios Megalooikonomou and
Zoran Obradovic},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Identifying gene functions using functional expression profiles obtained
by voxelation},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {188--197},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854805},
doi = {10.1145/1854776.1854805},
timestamp = {Tue, 03 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/AnSXMO10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/LuLHCTC10,
author = {Tzu{-}Pin Lu and
Liang{-}Chuan Lai and
Chuhsing Kate Hsiao and
Pei{-}Chun Chen and
Mong{-}Hsun Tsai and
Eric Y. Chuang},
editor = {Taesung Park and
Stephen Kwok{-}Wing Tsui and
Luonan Chen and
Michael K. Ng and
Limsoon Wong and
Xiaohua Hu},
title = {Concurrent analysis of copy number variations and expression profiles
to identify genes associated with tumorigenesis and survival outcome
in lung adenocarcinoma},
booktitle = {2010 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2010, Hong Kong, China, December 18-21, 2010, Proceedings},
pages = {284--289},
publisher = {{IEEE} Computer Society},
year = {2010},
url = {https://doi.org/10.1109/BIBM.2010.5706578},
doi = {10.1109/BIBM.2010.5706578},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/LuLHCTC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionetics/LicameleG10,
author = {Louis Licamele and
Lise Getoor},
editor = {Junichi Suzuki and
Tadashi Nakano},
title = {A Method for the Detection of Meaningful and Reproducible Group Signatures
from Gene Expression Profiles},
booktitle = {Bio-Inspired Models of Network, Information, and Computing Systems
- 5th International {ICST} Conference, {BIONETICS} 2010, Boston, MA,
USA, December 1-3, 2010, Revised Selected Papers},
series = {Lecture Notes of the Institute for Computer Sciences, Social Informatics
and Telecommunications Engineering},
volume = {87},
pages = {387--401},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-32615-8\_38},
doi = {10.1007/978-3-642-32615-8\_38},
timestamp = {Sun, 21 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionetics/LicameleG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biostec/NgW10,
author = {Ka{-}Lok Ng and
Chia{-}Wei Weng},
editor = {Ana L. N. Fred and
Joaquim Filipe and
Hugo Gamboa},
title = {In Silico Study of Expression Profiles Correlation between MicroRNAs
and Cancerous Genes},
booktitle = {{BIOINFORMATICS} 2010 - Proceedings of the First International Conference
on Bioinformatics, Valencia, Spain, January 20-23, 2010},
pages = {141--146},
publisher = {{INSTICC} Press},
year = {2010},
timestamp = {Fri, 29 Apr 2011 08:50:07 +0200},
biburl = {https://dblp.org/rec/conf/biostec/NgW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmlc/TangY10,
author = {Tsz{-}Yan Tang and
Hong Yan},
title = {Identifying periodicity of microarray gene expression profiles by
autoregressive modeling and spectral estimation},
booktitle = {International Conference on Machine Learning and Cybernetics, {ICMLC}
2010, Qingdao, China, July 11-14, 2010, Proceedings},
pages = {3062--3066},
publisher = {{IEEE}},
year = {2010},
url = {https://doi.org/10.1109/ICMLC.2010.5580747},
doi = {10.1109/ICMLC.2010.5580747},
timestamp = {Thu, 13 Sep 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icmlc/TangY10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ieaaie/UrdaSFJ10,
author = {Daniel Urda and
Jos{\'{e}} Luis Subirats and
Leonardo Franco and
Jos{\'{e}} Manuel Jerez},
editor = {Nicol{\'{a}}s Garc{\'{\i}}a{-}Pedrajas and
Francisco Herrera and
Colin Fyfe and
Jos{\'{e}} Manuel Ben{\'{\i}}tez and
Moonis Ali},
title = {Constructive Neural Networks to Predict Breast Cancer Outcome by Using
Gene Expression Profiles},
booktitle = {Trends in Applied Intelligent Systems - 23rd International Conference
on Industrial Engineering and Other Applications of Applied Intelligent
Systems, {IEA/AIE} 2010, Cordoba, Spain, June 1-4, 2010, Proceedings,
Part {I}},
series = {Lecture Notes in Computer Science},
volume = {6096},
pages = {317--326},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-13022-9\_32},
doi = {10.1007/978-3-642-13022-9\_32},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ieaaie/UrdaSFJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isnn/ZhangLY10,
author = {Weifeng Zhang and
Chao{-}Chun Liu and
Hong Yan},
editor = {Liqing Zhang and
Bao{-}Liang Lu and
James Tin{-}Yau Kwok},
title = {Temporal Gene Expression Profiles Reconstruction by Support Vector
Regression and Framelet Kernel},
booktitle = {Advances in Neural Networks - {ISNN} 2010, 7th International Symposium
on Neural Networks, {ISNN} 2010, Shanghai, China, June 6-9, 2010,
Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {6064},
pages = {68--74},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-13318-3\_9},
doi = {10.1007/978-3-642-13318-3\_9},
timestamp = {Tue, 09 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isnn/ZhangLY10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/KanterakisoZKST10,
author = {Alexandros Kanterakis and
Giorgos otamias and
Giorgos Zacharioudakis and
Lefteris Koumakis and
Stelios Sfakianakis and
Manolis Tsiknakis},
editor = {Charles Safran and
Shane R. Reti and
Heimar F. Marin},
title = {Scientific discovery workflows in bioinformatics: {A} scenario for
the coupling of molecular regulatory pathways and gene-expression
profiles},
booktitle = {{MEDINFO} 2010 - Proceedings of the 13th World Congress on Medical
Informatics, Cape Town, South Africa, September 12-15, 2010},
series = {Studies in Health Technology and Informatics},
volume = {160},
pages = {1304--1308},
publisher = {{IOS} Press},
year = {2010},
url = {https://doi.org/10.3233/978-1-60750-588-4-1304},
doi = {10.3233/978-1-60750-588-4-1304},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/KanterakisoZKST10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/setn/PotamiasKKM10,
author = {George Potamias and
Lefteris Koumakis and
Alexandros Kanterakis and
Vassilis Moustakis},
editor = {Stasinos Konstantopoulos and
Stavros J. Perantonis and
Vangelis Karkaletsis and
Constantine D. Spyropoulos and
George A. Vouros},
title = {Towards the Discovery of Reliable Biomarkers from Gene-Expression
Profiles: An Iterative Constraint Satisfaction Learning Approach},
booktitle = {Artificial Intelligence: Theories, Models and Applications, 6th Hellenic
Conference on AI, {SETN} 2010, Athens, Greece, May 4-7, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6040},
pages = {233--242},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12842-4\_27},
doi = {10.1007/978-3-642-12842-4\_27},
timestamp = {Tue, 14 May 2019 10:00:51 +0200},
biburl = {https://dblp.org/rec/conf/setn/PotamiasKKM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/abi/DuZW09,
author = {Minggang Du and
Shanwen Zhang and
Hong Wang},
title = {Tumor Classification Using High-Order Gene Expression Profiles Based
on Multilinear {ICA}},
journal = {Adv. Bioinformatics},
volume = {2009},
pages = {926450:1--926450:9},
year = {2009},
url = {https://doi.org/10.1155/2009/926450},
doi = {10.1155/2009/926450},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/abi/DuZW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MagalhaesCC09,
author = {Jo{\~{a}}o Pedro de Magalh{\~{a}}es and
Jo{\~{a}}o Curado and
George M. Church},
title = {Meta-analysis of age-related gene expression profiles identifies common
signatures of aging},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {875--881},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp073},
doi = {10.1093/BIOINFORMATICS/BTP073},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MagalhaesCC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/QiZLS09,
author = {Qihao Qi and
Yingdong Zhao and
Ming{-}Chung Li and
Richard M. Simon},
title = {Non-negative matrix factorization of gene expression profiles: a plug-in
for BRB-ArrayTools},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {545--547},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp009},
doi = {10.1093/BIOINFORMATICS/BTP009},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/QiZLS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JoungF09,
author = {Je{-}Gun Joung and
Zhangjun Fei},
title = {Computational identification of condition-specific miRNA targets based
on gene expression profiles and sequence information},
journal = {{BMC} Bioinform.},
volume = {10},
number = {{S-1}},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-S1-S34},
doi = {10.1186/1471-2105-10-S1-S34},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JoungF09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiSWSC09,
author = {Zhiguang Li and
Zhenqiang Su and
Zhining Wen and
Leming M. Shi and
Tao Chen},
title = {Microarray platform consistency is revealed by biologically functional
analysis of gene expression profiles},
journal = {{BMC} Bioinform.},
volume = {10},
number = {{S-11}},
pages = {12},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-S11-S12},
doi = {10.1186/1471-2105-10-S11-S12},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiSWSC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZollanvariCBD09,
author = {Amin Zollanvari and
Mary Jane Cunningham and
Ulisses M. Braga{-}Neto and
Edward R. Dougherty},
title = {Analysis and modeling of time-course gene-expression profiles from
nanomaterial-exposed primary human epidermal keratinocytes},
journal = {{BMC} Bioinform.},
volume = {10},
number = {{S-11}},
pages = {10},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-S11-S10},
doi = {10.1186/1471-2105-10-S11-S10},
timestamp = {Fri, 24 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZollanvariCBD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ShimamuraIYFNM09,
author = {Teppei Shimamura and
Seiya Imoto and
Rui Yamaguchi and
Andr{\'{e}} Fujita and
Masao Nagasaki and
Satoru Miyano},
title = {Recursive regularization for inferring gene networks from time-course
gene expression profiles},
journal = {{BMC} Syst. Biol.},
volume = {3},
pages = {41},
year = {2009},
url = {https://doi.org/10.1186/1752-0509-3-41},
doi = {10.1186/1752-0509-3-41},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ShimamuraIYFNM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijbra/WuXM09,
author = {Fang{-}Xiang Wu and
Zhonghang Xia and
Lei Mu},
title = {Finding Significantly Expressed genes from time-course expression
profiles},
journal = {Int. J. Bioinform. Res. Appl.},
volume = {5},
number = {1},
pages = {50--63},
year = {2009},
url = {https://doi.org/10.1504/IJBRA.2009.022463},
doi = {10.1504/IJBRA.2009.022463},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijbra/WuXM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ChenW09,
author = {Xi Chen and
Lily Wang},
title = {Integrating Biological Knowledge with Gene Expression Profiles for
Survival Prediction of Cancer},
journal = {J. Comput. Biol.},
volume = {16},
number = {2},
pages = {265--278},
year = {2009},
url = {https://doi.org/10.1089/cmb.2008.12TT},
doi = {10.1089/CMB.2008.12TT},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ChenW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pr/HongC09,
author = {Jin{-}Hyuk Hong and
Sung{-}Bae Cho},
title = {Gene boosting for cancer classification based on gene expression profiles},
journal = {Pattern Recognit.},
volume = {42},
number = {9},
pages = {1761--1767},
year = {2009},
url = {https://doi.org/10.1016/j.patcog.2009.01.006},
doi = {10.1016/J.PATCOG.2009.01.006},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/pr/HongC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pr/LiewLCY09,
author = {Alan Wee{-}Chung Liew and
Ngai{-}Fong Law and
Xiao{-}Qin Cao and
Hong Yan},
title = {Statistical power of Fisher test for the detection of short periodic
gene expression profiles},
journal = {Pattern Recognit.},
volume = {42},
number = {4},
pages = {549--556},
year = {2009},
url = {https://doi.org/10.1016/j.patcog.2008.09.022},
doi = {10.1016/J.PATCOG.2008.09.022},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/pr/LiewLCY09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YukinawaOKI09,
author = {Naoto Yukinawa and
Shigeyuki Oba and
Kikuya Kato and
Shin Ishii},
title = {Optimal Aggregation of Binary Classifiers for Multiclass Cancer Diagnosis
Using Gene Expression Profiles},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {6},
number = {2},
pages = {333--343},
year = {2009},
url = {https://doi.org/10.1109/TCBB.2007.70239},
doi = {10.1109/TCBB.2007.70239},
timestamp = {Fri, 08 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YukinawaOKI09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biocomp/SalinasK09,
author = {Edward Salinas and
Amitava Karmaker},
editor = {Hamid R. Arabnia and
Mary Qu Yang},
title = {Analysis of Correlations Between Genes and Tetrads of Transcription
Factors Using Microarray Expression Profiles},
booktitle = {International Conference on Bioinformatics {\&} Computational
Biology, {BIOCOMP} 2009, July 13-16, 2009, Las Vegas Nevada, USA,
2 Volumes},
pages = {148--152},
publisher = {{CSREA} Press},
year = {2009},
timestamp = {Wed, 28 Oct 2009 10:44:56 +0100},
biburl = {https://dblp.org/rec/conf/biocomp/SalinasK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csie/ChenSCCE09,
author = {Thomas C. Chen and
Sandeep Sanga and
Tina Y. Chou and
Vittorio Cristini and
Mary E. Edgerton},
editor = {Mark Burgin and
Masud H. Chowdhury and
Chan H. Ham and
Simone A. Ludwig and
Weilian Su and
Sumanth Yenduri},
title = {Neural Network with K-Means Clustering via {PCA} for Gene Expression
Profile Analysis},
booktitle = {{CSIE} 2009, 2009 {WRI} World Congress on Computer Science and Information
Engineering, March 31 - April 2, 2009, Los Angeles, California, USA,
7 Volumes},
pages = {670--673},
publisher = {{IEEE} Computer Society},
year = {2009},
url = {https://doi.org/10.1109/CSIE.2009.945},
doi = {10.1109/CSIE.2009.945},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/csie/ChenSCCE09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gensips/BouaynayaSN09,
author = {Nidhal Bouaynaya and
Dan Schonfeld and
Radhakrishnan Nagarajan},
title = {Analysis of temporal gene expression profiles using time-dependent
{MUSIC} algorithm},
booktitle = {2009 {IEEE} International Workshop on Genomic Signal Processing and
Statistics, GENSiPS 2009, Minneapolis, MN, USA, May 17-21, 2009},
pages = {1--4},
publisher = {{IEEE}},
year = {2009},
url = {https://doi.org/10.1109/GENSIPS.2009.5174337},
doi = {10.1109/GENSIPS.2009.5174337},
timestamp = {Wed, 16 Oct 2019 14:14:54 +0200},
biburl = {https://dblp.org/rec/conf/gensips/BouaynayaSN09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icann/Martin-MerinoR09,
author = {Manuel Mart{\'{\i}}n{-}Merino and
Javier De Las Rivas},
editor = {Cesare Alippi and
Marios M. Polycarpou and
Christos G. Panayiotou and
Georgios Ellinas},
title = {Kernel Alignment \emph{k}-NN for Human Cancer Classification Using
the Gene Expression Profiles},
booktitle = {Artificial Neural Networks - {ICANN} 2009, 19th International Conference,
Limassol, Cyprus, September 14-17, 2009, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {5769},
pages = {195--204},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04277-5\_20},
doi = {10.1007/978-3-642-04277-5\_20},
timestamp = {Tue, 14 May 2019 10:00:49 +0200},
biburl = {https://dblp.org/rec/conf/icann/Martin-MerinoR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icic/ChenH09,
author = {Yu Chen and
Kyungsook Han},
editor = {De{-}Shuang Huang and
Kang{-}Hyun Jo and
Hong{-}Hee Lee and
Hee{-}Jun Kang and
Vitoantonio Bevilacqua},
title = {Dynamic Identification and Visualization of Gene Regulatory Networks
from Time-Series Gene Expression Profiles},
booktitle = {Emerging Intelligent Computing Technology and Applications, 5th International
Conference on Intelligent Computing, {ICIC} 2009, Ulsan, South Korea,
September 16-19, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5754},
pages = {65--74},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04070-2\_8},
doi = {10.1007/978-3-642-04070-2\_8},
timestamp = {Tue, 14 May 2019 10:00:53 +0200},
biburl = {https://dblp.org/rec/conf/icic/ChenH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmla/FadeevMF09a,
author = {Aleksey Fadeev and
Oualid Missaoui and
Hichem Frigui},
editor = {M. Arif Wani and
Mehmed M. Kantardzic and
Vasile Palade and
Lukasz A. Kurgan and
Yuan (Alan) Qi},
title = {Ensemble Possibilistic {K-NN} for Functional Clustering of Gene Expression
Profiles in Human Cancers Challenge},
booktitle = {International Conference on Machine Learning and Applications, {ICMLA}
2009, Miami Beach, Florida, USA, December 13-15, 2009},
pages = {439--442},
publisher = {{IEEE} Computer Society},
year = {2009},
url = {https://doi.org/10.1109/ICMLA.2009.123},
doi = {10.1109/ICMLA.2009.123},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icmla/FadeevMF09a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ida/Martin-MerinoR09,
author = {Manuel Mart{\'{\i}}n{-}Merino and
Javier De Las Rivas},
editor = {Niall M. Adams and
C{\'{e}}line Robardet and
Arno Siebes and
Jean{-}Fran{\c{c}}ois Boulicaut},
title = {Improving k-NN for Human Cancer Classification Using the Gene Expression
Profiles},
booktitle = {Advances in Intelligent Data Analysis VIII, 8th International Symposium
on Intelligent Data Analysis, {IDA} 2009, Lyon, France, August 31
- September 2, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5772},
pages = {107--118},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03915-7\_10},
doi = {10.1007/978-3-642-03915-7\_10},
timestamp = {Tue, 14 May 2019 10:00:49 +0200},
biburl = {https://dblp.org/rec/conf/ida/Martin-MerinoR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwann/JhunP09,
author = {Min A. Jhun and
Taesung Park},
editor = {Joan Cabestany and
Francisco Sandoval Hern{\'{a}}ndez and
Alberto Prieto and
Juan M. Corchado},
title = {Clustering Method to Identify Gene Sets with Similar Expression Profiles
in Adjacent Chromosomal Regions},
booktitle = {Bio-Inspired Systems: Computational and Ambient Intelligence, 10th
International Work-Conference on Artificial Neural Networks, {IWANN}
2009, Salamanca, Spain, June 10-12, 2009. Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {5517},
pages = {837--844},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02478-8\_105},
doi = {10.1007/978-3-642-02478-8\_105},
timestamp = {Fri, 06 Dec 2019 09:55:14 +0100},
biburl = {https://dblp.org/rec/conf/iwann/JhunP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/prib/SubhaniNRB09,
author = {Numanul Subhani and
Alioune Ngom and
Luis Rueda and
Conrad J. Burden},
editor = {Visakan Kadirkamanathan and
Guido Sanguinetti and
Mark A. Girolami and
Mahesan Niranjan and
Josselin Noirel},
title = {Microarray Time-Series Data Clustering via Multiple Alignment of Gene
Expression Profiles},
booktitle = {Pattern Recognition in Bioinformatics, 4th {IAPR} International Conference,
{PRIB} 2009, Sheffield, UK, September 7-9, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5780},
pages = {377--390},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04031-3\_33},
doi = {10.1007/978-3-642-04031-3\_33},
timestamp = {Wed, 08 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/prib/SubhaniNRB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sac/SherminO09,
author = {Akther Shermin and
Mehmet A. Orgun},
editor = {Sung Y. Shin and
Sascha Ossowski},
title = {Using dynamic bayesian networks to infer gene regulatory networks
from expression profiles},
booktitle = {Proceedings of the 2009 {ACM} Symposium on Applied Computing (SAC),
Honolulu, Hawaii, USA, March 9-12, 2009},
pages = {799--803},
publisher = {{ACM}},
year = {2009},
url = {https://doi.org/10.1145/1529282.1529449},
doi = {10.1145/1529282.1529449},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sac/SherminO09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/smc/LiewY09,
author = {Alan Wee{-}Chung Liew and
Hong Yan},
title = {Reliable Detection of Short Periodic Gene Expression Time Series Profiles
in {DNA} Microarray Data},
booktitle = {Proceedings of the {IEEE} International Conference on Systems, Man
and Cybernetics, San Antonio, TX, USA, 11-14 October 2009},
pages = {4274--4279},
publisher = {{IEEE}},
year = {2009},
url = {https://doi.org/10.1109/ICSMC.2009.5346812},
doi = {10.1109/ICSMC.2009.5346812},
timestamp = {Wed, 16 Oct 2019 14:14:51 +0200},
biburl = {https://dblp.org/rec/conf/smc/LiewY09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/artmed/ChiuCL08,
author = {Shih{-}Hau Chiu and
Chien{-}Chi Chen and
Thy{-}Hou Lin},
title = {Using support vector regression to model the correlation between the
clinical metastases time and gene expression profile for breast cancer},
journal = {Artif. Intell. Medicine},
volume = {44},
number = {3},
pages = {221--231},
year = {2008},
url = {https://doi.org/10.1016/j.artmed.2008.06.005},
doi = {10.1016/J.ARTMED.2008.06.005},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/artmed/ChiuCL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MaCSBKKN08,
author = {Qicheng Ma and
Gung{-}Wei Chirn and
Joseph D. Szustakowski and
Adel Bakhtiarova and
Penelope A. Kosinski and
Daniel M. Kemp and
Nanguneri Nirmala},
title = {Uncovering mechanisms of transcriptional regulations by systematic
mining of cis regulatory elements with gene expression profiles},
journal = {BioData Min.},
volume = {1},
year = {2008},
url = {https://doi.org/10.1186/1756-0381-1-4},
doi = {10.1186/1756-0381-1-4},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MaCSBKKN08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BhattacharyaD08,
author = {Anindya Bhattacharya and
Rajat K. De},
title = {Divisive Correlation Clustering Algorithm {(DCCA)} for grouping of
genes: detecting varying patterns in expression profiles},
journal = {Bioinform.},
volume = {24},
number = {11},
pages = {1359--1366},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn133},
doi = {10.1093/BIOINFORMATICS/BTN133},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BhattacharyaD08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HiroseYIYHCPM08,
author = {Osamu Hirose and
Ryo Yoshida and
Seiya Imoto and
Rui Yamaguchi and
Tomoyuki Higuchi and
Stephen D. Charnock{-}Jones and
Cristin G. Print and
Satoru Miyano},
title = {Statistical inference of transcriptional module-based gene networks
from time course gene expression profiles by using state space models},
journal = {Bioinform.},
volume = {24},
number = {7},
pages = {932--942},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btm639},
doi = {10.1093/BIOINFORMATICS/BTM639},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HiroseYIYHCPM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BuonaguroMAWTLMB08,
author = {Luigi Buonaguro and
Alessandro Monaco and
Eleonora Aric{\`{o}} and
Ena Wang and
Maria Lina Tornesello and
George K. Lewis and
Francesco M. Marincola and
Franco M. Buonaguro},
title = {Gene expression profile of peripheral blood mononuclear cells in response
to HIV-VLPs stimulation},
journal = {{BMC} Bioinform.},
volume = {9},
number = {{S-2}},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-S2-S5},
doi = {10.1186/1471-2105-9-S2-S5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BuonaguroMAWTLMB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GormleyT08,
author = {Michael Gormley and
Aydin T{\"{o}}zeren},
title = {Expression profiles of switch-like genes accurately classify tissue
and infectious disease phenotypes in model-based classification},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-486},
doi = {10.1186/1471-2105-9-486},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GormleyT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TienLWC08,
author = {Yin{-}Jing Tien and
Yun{-}Shien Lee and
Han{-}Ming Wu and
Chun{-}Houh Chen},
title = {Methods for simultaneously identifying coherent local clusters with
smooth global patterns in gene expression profiles},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-155},
doi = {10.1186/1471-2105-9-155},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TienLWC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MarrGHM08,
author = {Carsten Marr and
Marcel Geertz and
Marc{-}Thorsten H{\"{u}}tt and
Georgi Muskhelishvili},
title = {Dissecting the logical types of network control in gene expression
profiles},
journal = {{BMC} Syst. Biol.},
volume = {2},
pages = {18},
year = {2008},
url = {https://doi.org/10.1186/1752-0509-2-18},
doi = {10.1186/1752-0509-2-18},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MarrGHM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijbra/KnijnenburgWR08,
author = {Theo A. Knijnenburg and
Lodewyk F. A. Wessels and
Marcel J. T. Reinders},
title = {Creating gene set activity profiles with time-series expression data},
journal = {Int. J. Bioinform. Res. Appl.},
volume = {4},
number = {3},
pages = {306--323},
year = {2008},
url = {https://doi.org/10.1504/IJBRA.2008.019577},
doi = {10.1504/IJBRA.2008.019577},
timestamp = {Fri, 11 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijbra/KnijnenburgWR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jece/AlexandrovGS08,
author = {Theodore Alexandrov and
Nina Golyandina and
Alexander V. Spirov},
title = {Singular Spectrum Analysis of Gene Expression Profiles of Early \emph{Drosophila
embryo}: Exponential-in-Distance Patterns},
journal = {J. Electr. Comput. Eng.},
volume = {2008},
year = {2008},
url = {https://doi.org/10.1155/2008/825758},
doi = {10.1155/2008/825758},
timestamp = {Wed, 20 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jece/AlexandrovGS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/TengC08,
author = {Li Teng and
Laiwan Chan},
title = {Discovering Distinct Patterns in Gene Expression Profiles},
journal = {J. Integr. Bioinform.},
volume = {5},
number = {2},
year = {2008},
url = {https://doi.org/10.2390/biecoll-jib-2008-105},
doi = {10.2390/BIECOLL-JIB-2008-105},
timestamp = {Thu, 21 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/TengC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/BaruchIGSS08,
author = {Leehod Baruch and
Shalev Itzkovitz and
Michal Golan{-}Mashiach and
Ehud Shapiro and
Eran Segal},
title = {Using Expression Profiles of \emph{Caenorhabditis elegans} Neurons
To Identify Genes That Mediate Synaptic Connectivity},
journal = {PLoS Comput. Biol.},
volume = {4},
number = {7},
year = {2008},
url = {https://doi.org/10.1371/journal.pcbi.1000120},
doi = {10.1371/JOURNAL.PCBI.1000120},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/BaruchIGSS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/MizutaniS08,
author = {Eriko Mizutani and
Jun Sese},
title = {{GOMA:} Web utility for direct finding of enriched Gene Ontology terms
from gene expression profile},
booktitle = {Proceedings of the 8th {IEEE} International Conference on Bioinformatics
and Bioengineering, {BIBE} 2008, October 8-10, 2008, Athens, Greece},
pages = {1--6},
publisher = {{IEEE}},
year = {2008},
url = {https://doi.org/10.1109/BIBE.2008.4696687},
doi = {10.1109/BIBE.2008.4696687},
timestamp = {Wed, 16 Oct 2019 14:14:56 +0200},
biburl = {https://dblp.org/rec/conf/bibe/MizutaniS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/RenO08,
author = {Siyuan Ren and
Zoran Obradovic},
editor = {Xue{-}wen Chen and
Xiaohua Hu and
Sun Kim},
title = {Improvement of Survival Prediction from Gene Expression Profiles by
Mining of Prior Knowledge},
booktitle = {2008 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2008, Philadephia, Pennsylvania, USA, November 3-5, 2008},
pages = {372--375},
publisher = {{IEEE} Computer Society},
year = {2008},
url = {https://doi.org/10.1109/BIBM.2008.53},
doi = {10.1109/BIBM.2008.53},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibm/RenO08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/Wu08,
author = {Fang{-}Xiang Wu},
editor = {Xue{-}wen Chen and
Xiaohua Hu and
Sun Kim},
title = {Detecting Significantly Expressed Genes from Their Time-Course Expression
Profiles and Its Validation},
booktitle = {2008 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2008, Philadephia, Pennsylvania, USA, November 3-5, 2008},
pages = {170--175},
publisher = {{IEEE} Computer Society},
year = {2008},
url = {https://doi.org/10.1109/BIBM.2008.49},
doi = {10.1109/BIBM.2008.49},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/Wu08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biocomp/MeiMAMDTLG08,
author = {Nan Mei and
Mugimane G. Manjanatha and
Mizuo Azuma and
Lea P. McDaniel and
Stacey L. Dial and
Jo Tseng and
Wayne Liao and
Lei Guo},
editor = {Hamid R. Arabnia and
Mary Qu Yang and
Jack Y. Yang},
title = {Liver Gene Expression Profile of Mice Treated with Acrylamide in Drinking
Water},
booktitle = {International Conference on Bioinformatics {\&} Computational
Biology, {BIOCOMP} 2008, July 14-17, 2008, Las Vegas Nevada, USA,
2 Volumes},
pages = {131--137},
publisher = {{CSREA} Press},
year = {2008},
timestamp = {Thu, 12 Feb 2015 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/biocomp/MeiMAMDTLG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biocomp/SalinasK08,
author = {Edward Salinas and
Amitava Karmaker},
editor = {Hamid R. Arabnia and
Mary Qu Yang and
Jack Y. Yang},
title = {Analysis of Correlations between Genes and Triads of Transcription
Factors Using Microarray Expression Profiles},
booktitle = {International Conference on Bioinformatics {\&} Computational
Biology, {BIOCOMP} 2008, July 14-17, 2008, Las Vegas Nevada, USA,
2 Volumes},
pages = {170--174},
publisher = {{CSREA} Press},
year = {2008},
timestamp = {Fri, 06 Feb 2009 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/biocomp/SalinasK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bmei/QinY08,
author = {Hong Qin and
Li Yang},
title = {Detection of Changes in Transitive Associations by Shortest-path Analysis
of Protein Interaction Networks Integrated with Gene Expression Profiles},
booktitle = {Proceedings of the 2008 International Conference on BioMedical Engineering
and Informatics, {BMEI} 2008, May 28-30, 2008, Sanya, Hainan, China
- Volume 1},
pages = {418--423},
publisher = {{IEEE} Computer Society},
year = {2008},
url = {https://doi.org/10.1109/BMEI.2008.157},
doi = {10.1109/BMEI.2008.157},
timestamp = {Tue, 27 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bmei/QinY08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cec/HuangCHH08,
author = {Hui{-}Ling Huang and
Kuan{-}Wei Chen and
Shinn{-}Jang Ho and
Shinn{-}Ying Ho},
title = {Inferring S-system models of genetic networks from a time-series real
data set of gene expression profiles},
booktitle = {Proceedings of the {IEEE} Congress on Evolutionary Computation, {CEC}
2008, June 1-6, 2008, Hong Kong, China},
pages = {2788--2793},
publisher = {{IEEE}},
year = {2008},
url = {https://doi.org/10.1109/CEC.2008.4631172},
doi = {10.1109/CEC.2008.4631172},
timestamp = {Thu, 16 Dec 2021 14:01:33 +0100},
biburl = {https://dblp.org/rec/conf/cec/HuangCHH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cec/RuanWLL08,
author = {Xiaogang Ruan and
Jinlian Wang and
Hui Li and
Xiaoming Li},
title = {Study of tumor molecular diagnosis model based on artificial neural
network with gene expression profile},
booktitle = {Proceedings of the {IEEE} Congress on Evolutionary Computation, {CEC}
2008, June 1-6, 2008, Hong Kong, China},
pages = {1051--1056},
publisher = {{IEEE}},
year = {2008},
url = {https://doi.org/10.1109/CEC.2008.4630926},
doi = {10.1109/CEC.2008.4630926},
timestamp = {Sun, 21 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cec/RuanWLL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibcb/BensoCPS08,
author = {Alfredo Benso and
Stefano Di Carlo and
Gianfranco Politano and
Luca Sterpone},
title = {A graph-based representation of Gene Expression profiles in {DNA}
microarrays},
booktitle = {Proceedings of the 2008 {IEEE} Symposium on Computational Intelligence
in Bioinformatics and Computational Biology, {CIBCB} 2008, Sun Valley
Resort, Sun Valley, Idaho, USA, September 15-17, 2008},
pages = {75--82},
publisher = {{IEEE}},
year = {2008},
url = {https://doi.org/10.1109/CIBCB.2008.4675762},
doi = {10.1109/CIBCB.2008.4675762},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cibcb/BensoCPS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/fskd/WeiYWG08,
author = {Jinmao Wei and
Xin{-}Bin Yang and
Shuqin Wang and
Li Gu},
editor = {Jun Ma and
Yilong Yin and
Jian Yu and
Shuigeng Zhou},
title = {A Novel Rough Hypercuboid Method for Classifying Cancers Based on
Gene Expression Profiles},
booktitle = {Fifth International Conference on Fuzzy Systems and Knowledge Discovery,
{FSKD} 2008, 18-20 October 2008, Jinan, Shandong, China, Proceedings,
Volume 2},
pages = {262--266},
publisher = {{IEEE} Computer Society},
year = {2008},
url = {https://doi.org/10.1109/FSKD.2008.60},
doi = {10.1109/FSKD.2008.60},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/fskd/WeiYWG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/his/Rubio-EscuderoMRZ08,
author = {Cristina Rubio{-}Escudero and
Francisco Mart{\'{\i}}nez{-}{\'{A}}lvarez and
Roc{\'{\i}}o Romero{-}Z{\'{a}}liz and
Igor Zwir},
editor = {Fatos Xhafa and
Francisco Herrera and
Ajith Abraham and
Mario K{\"{o}}ppen and
Jos{\'{e}} Manuel Ben{\'{\i}}tez},
title = {Classification of Gene Expression Profiles: Comparison of K-means
and Expectation Maximization Algorithms},
booktitle = {8th International Conference on Hybrid Intelligent Systems {(HIS}
2008), September 10-12, 2008, Barcelona, Spain},
pages = {831--836},
publisher = {{IEEE} Computer Society},
year = {2008},
url = {https://doi.org/10.1109/HIS.2008.92},
doi = {10.1109/HIS.2008.92},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/his/Rubio-EscuderoMRZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcnn/KasturiA08,
author = {Jyotsna Kasturi and
Raj Acharya},
title = {A new information-theoretic dissimilarity for clustering time-dependent
gene expression profiles modeled withradial basis functions},
booktitle = {Proceedings of the International Joint Conference on Neural Networks,
{IJCNN} 2008, part of the {IEEE} World Congress on Computational Intelligence,
{WCCI} 2008, Hong Kong, China, June 1-6, 2008},
pages = {2857--2864},
publisher = {{IEEE}},
year = {2008},
url = {https://doi.org/10.1109/IJCNN.2008.4634200},
doi = {10.1109/IJCNN.2008.4634200},
timestamp = {Wed, 16 Oct 2019 14:14:55 +0200},
biburl = {https://dblp.org/rec/conf/ijcnn/KasturiA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/prib/NagarajanUM08,
author = {Radhakrishnan Nagarajan and
Meenakshi Upreti and
Mariofanna G. Milanova},
editor = {Madhu Chetty and
Alioune Ngom and
Shandar Ahmad},
title = {Identifying Non-random Patterns from Gene Expression Profiles},
booktitle = {Pattern Recognition in Bioinformatics, Third {IAPR} International
Conference, {PRIB} 2008, Melbourne, Australia, October 15-17, 2008.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5265},
pages = {299--310},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88436-1\_26},
doi = {10.1007/978-3-540-88436-1\_26},
timestamp = {Tue, 14 May 2019 10:00:45 +0200},
biburl = {https://dblp.org/rec/conf/prib/NagarajanUM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/Badea08,
author = {Liviu Badea},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Extracting Gene Expression Profiles Common to Colon and Pancreatic
Adenocarcinoma Using Simultaneous Nonnegative Matrix Factorization},
booktitle = {Biocomputing 2008, Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, 4-8 January 2008},
pages = {267--278},
publisher = {World Scientific},
year = {2008},
url = {http://psb.stanford.edu/psb-online/proceedings/psb08/badea.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/Badea08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sac/ShaoYN08,
author = {Haifeng Shao and
Bei Yu and
Joseph H. Nadeau},
editor = {Roger L. Wainwright and
Hisham Haddad},
title = {Strangeness-based feature weighting and classification of gene expression
profiles},
booktitle = {Proceedings of the 2008 {ACM} Symposium on Applied Computing (SAC),
Fortaleza, Ceara, Brazil, March 16-20, 2008},
pages = {1292--1296},
publisher = {{ACM}},
year = {2008},
url = {https://doi.org/10.1145/1363686.1363985},
doi = {10.1145/1363686.1363985},
timestamp = {Tue, 06 Nov 2018 11:06:48 +0100},
biburl = {https://dblp.org/rec/conf/sac/ShaoYN08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/setn/KanterakisKMP08,
author = {Alexandros Kanterakis and
Dimitris Kafetzopoulos and
Vassilis Moustakis and
George Potamias},
editor = {John Darzentas and
George A. Vouros and
Spyros Vosinakis and
Argyris Arnellos},
title = {Mining Gene Expression Profiles and Gene Regulatory Networks: Identification
of Phenotype-Specific Molecular Mechanisms},
booktitle = {Artificial Intelligence: Theories, Models and Applications, 5th Hellenic
Conference on AI, {SETN} 2008, Syros, Greece, October 2-4, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5138},
pages = {97--109},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87881-0\_10},
doi = {10.1007/978-3-540-87881-0\_10},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/setn/KanterakisKMP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wob/LiAS08,
author = {Shenggang Li and
Miguel A. Andrade{-}Navarro and
David Sankoff},
editor = {Ana L. C. Bazzan and
Mark Craven and
Nat{\'{a}}lia Florencio Martins},
title = {A Customized Class of Functions for Modeling and Clustering Gene Expression
Profiles in Embryonic Stem Cells},
booktitle = {Advances in Bioinformatics and Computational Biology, Third Brazilian
Symposium on Bioinformatics, {BSB} 2008, Santo Andr{\'{e}}, Brazil,
August 28-30, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5167},
pages = {92--103},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-85557-6\_9},
doi = {10.1007/978-3-540-85557-6\_9},
timestamp = {Tue, 14 May 2019 10:00:50 +0200},
biburl = {https://dblp.org/rec/conf/wob/LiAS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/asc/BlancoMR08,
author = {{\'{A}}ngela Blanco and
Manuel Mart{\'{\i}}n{-}Merino and
Javier De Las Rivas},
editor = {Emilio Corchado and
Juan M. Corchado and
Ajith Abraham},
title = {Ensemble of Support Vector Machines to Improve the Cancer Class Prediction
Based on the Gene Expression Profiles},
booktitle = {Innovations in Hybrid Intelligent Systems},
series = {Advances in Soft Computing},
volume = {44},
pages = {393--400},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-74972-1\_51},
doi = {10.1007/978-3-540-74972-1\_51},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/series/asc/BlancoMR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GyeneseiWBSS07,
author = {Attila Gyenesei and
Ulrich Wagner and
Simon Barkow{-}Oesterreicher and
Etzard Stolte and
Ralph Schlapbach},
title = {Mining co-regulated gene profiles for the detection of functional
associations in gene expression data},
journal = {Bioinform.},
volume = {23},
number = {15},
pages = {1927--1935},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm276},
doi = {10.1093/BIOINFORMATICS/BTM276},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GyeneseiWBSS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WongWW07,
author = {Dorothy S. V. Wong and
Frederick K. Wong and
Graham R. Wood},
title = {A multi-stage approach to clustering and imputation of gene expression
profiles},
journal = {Bioinform.},
volume = {23},
number = {8},
pages = {998--1005},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm053},
doi = {10.1093/BIOINFORMATICS/BTM053},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WongWW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BlancoMR07,
author = {{\'{A}}ngela Blanco and
Manuel Mart{\'{\i}}n{-}Merino and
Javier De Las Rivas},
title = {Combining dissimilarity based classifiers for cancer prediction using
gene expression profiles},
journal = {{BMC} Bioinform.},
volume = {8},
number = {{S-8}},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-S8-S3},
doi = {10.1186/1471-2105-8-S8-S3},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BlancoMR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GuoMDFC07,
author = {Lei Guo and
Nan Mei and
Stacey L. Dial and
James C. Fuscoe and
Tao Chen},
title = {Comparison of gene expression profiles altered by comfrey and riddelliine
in rat liver},
journal = {{BMC} Bioinform.},
volume = {8},
number = {{S-7}},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-S7-S22},
doi = {10.1186/1471-2105-8-S7-S22},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GuoMDFC07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimZJCLFH07,
author = {Kyungpil Kim and
Shibo Zhang and
Keni Jiang and
Li Cai and
In{-}Beum Lee and
Lewis J. Feldman and
Haiyan Huang},
title = {Measuring similarities between gene expression profiles through new
data transformations},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-29},
doi = {10.1186/1471-2105-8-29},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KimZJCLFH07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PittelkowW07,
author = {Yvonne E. Pittelkow and
Susan R. Wilson},
title = {h-Profile plots for the discovery and exploration of patterns in gene
expression data with an application to time course data},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-486},
doi = {10.1186/1471-2105-8-486},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PittelkowW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SupperSWHZ07,
author = {Jochen Supper and
Martin Strauch and
Dierk Wanke and
Klaus Harter and
Andreas Zell},
title = {{EDISA:} extracting biclusters from multiple time-series of gene expression
profiles},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-334},
doi = {10.1186/1471-2105-8-334},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SupperSWHZ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiSYMNRHC07,
author = {Zheng Li and
Shireesh Srivastava and
Xuerui Yang and
Sheenu Mittal and
Paul Norton and
James H. Resau and
Brian B. Haab and
Christina Chan},
title = {A hierarchical approach employing metabolic and gene expression profiles
to identify the pathways that confer cytotoxicity in HepG2 cells},
journal = {{BMC} Syst. Biol.},
volume = {1},
pages = {21},
year = {2007},
url = {https://doi.org/10.1186/1752-0509-1-21},
doi = {10.1186/1752-0509-1-21},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiSYMNRHC07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/KimKC07,
author = {Shinuk Kim and
Junil Kim and
Kwang{-}Hyun Cho},
title = {Inferring gene regulatory networks from temporal expression profiles
under time-delay and noise},
journal = {Comput. Biol. Chem.},
volume = {31},
number = {4},
pages = {239--245},
year = {2007},
url = {https://doi.org/10.1016/j.compbiolchem.2007.03.013},
doi = {10.1016/J.COMPBIOLCHEM.2007.03.013},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/candc/KimKC07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cbm/Asyali07,
author = {Musa H. Asyali},
title = {Gene expression profile class prediction using linear Bayesian classifiers},
journal = {Comput. Biol. Medicine},
volume = {37},
number = {12},
pages = {1690--1699},
year = {2007},
url = {https://doi.org/10.1016/j.compbiomed.2007.04.001},
doi = {10.1016/J.COMPBIOMED.2007.04.001},
timestamp = {Wed, 02 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cbm/Asyali07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/csda/Liang07,
author = {Faming Liang},
title = {Use of SVD-based probit transformation in clustering gene expression
profiles},
journal = {Comput. Stat. Data Anal.},
volume = {51},
number = {12},
pages = {6355--6366},
year = {2007},
url = {https://doi.org/10.1016/j.csda.2007.01.022},
doi = {10.1016/J.CSDA.2007.01.022},
timestamp = {Tue, 18 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/csda/Liang07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ejbsb/AburataniSSHKH07,
author = {Sachiyo Aburatani and
Fuyan Sun and
Shigeru Saito and
Masao Honda and
Shuichi Kaneko and
Katsuhisa Horimoto},
title = {Gene Systems Network Inferred from Expression Profiles in Hepatocellular
Carcinogenesis by Graphical Gaussian Model},
journal = {{EURASIP} J. Bioinform. Syst. Biol.},
volume = {2007},
year = {2007},
url = {https://doi.org/10.1155/2007/47214},
doi = {10.1155/2007/47214},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ejbsb/AburataniSSHKH07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/KaminskiB07,
author = {Naftali Kaminski and
Ziv Bar{-}Joseph},
title = {A Patient-Gene Model for Temporal Expression Profiles in Clinical
Studies},
journal = {J. Comput. Biol.},
volume = {14},
number = {3},
pages = {324--338},
year = {2007},
url = {https://doi.org/10.1089/cmb.2007.0001},
doi = {10.1089/CMB.2007.0001},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/KaminskiB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KarmakerYDKK07,
author = {Amitava Karmaker and
Kihoon Yoon and
Mark Doderer and
Russell Kruzelock and
Stephen Kwek},
title = {Identifying Transcription Regulatory Elements in the Human and Mouse
Genomes Using Tissue-specific Gene Expression Profiles},
journal = {J. Integr. Bioinform.},
volume = {4},
number = {2},
year = {2007},
url = {https://doi.org/10.2390/biecoll-jib-2007-59},
doi = {10.2390/BIECOLL-JIB-2007-59},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/KarmakerYDKK07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jifs/ParkC07,
author = {Han{-}Saem Park and
Sung{-}Bae Cho},
title = {Evolutionary fuzzy cluster analysis with Bayesian validation of gene
expression profiles},
journal = {J. Intell. Fuzzy Syst.},
volume = {18},
number = {6},
pages = {543--559},
year = {2007},
url = {http://content.iospress.com/articles/journal-of-intelligent-and-fuzzy-systems/ifs00374},
timestamp = {Sat, 25 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jifs/ParkC07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mbec/HouSLZ07,
author = {Jingyu Hou and
Wei Shi and
Gang Li and
Wanlei Zhou},
title = {An effective non-parametric method for globally clustering genes from
expression profiles},
journal = {Medical Biol. Eng. Comput.},
volume = {45},
number = {12},
pages = {1175--1185},
year = {2007},
url = {https://doi.org/10.1007/s11517-007-0271-1},
doi = {10.1007/S11517-007-0271-1},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mbec/HouSLZ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ParkinsonKSACFHKLLMRSWSB07,
author = {Helen E. Parkinson and
Misha Kapushesky and
Mohammadreza Shojatalab and
Niran Abeygunawardena and
Richard Coulson and
Anna Farne and
Ele Holloway and
Nikolay Kolesnykov and
P. Lilja and
Margus Lukk and
Roby Mani and
Tim F. Rayner and
Anjan Sharma and
E. William and
Ugis Sarkans and
Alvis Brazma},
title = {ArrayExpress - a public database of microarray experiments and gene
expression profiles},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Database-Issue},
pages = {747--750},
year = {2007},
url = {https://doi.org/10.1093/nar/gkl995},
doi = {10.1093/NAR/GKL995},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ParkinsonKSACFHKLLMRSWSB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ni/Cavallaro07,
author = {Sebastiano Cavallaro},
title = {Neuronal Apoptosis Revealed by Genomic Analysis: Integrating Gene
Expression Profiles with Functional Information},
journal = {Neuroinformatics},
volume = {5},
number = {2},
pages = {115--126},
year = {2007},
url = {https://doi.org/10.1007/s12021-007-0006-3},
doi = {10.1007/S12021-007-0006-3},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ni/Cavallaro07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ChenBCGLS07,
author = {Yili Chen and
Thomas W. Blackwell and
Ji Chen and
Jing Gao and
Angel W. Lee and
David J. States},
title = {Integration of Genome and Chromatin Structure with Gene Expression
Profiles To Predict c-\emph{MYC} Recognition Site Binding and Function},
journal = {PLoS Comput. Biol.},
volume = {3},
number = {4},
year = {2007},
url = {https://doi.org/10.1371/journal.pcbi.0030063},
doi = {10.1371/JOURNAL.PCBI.0030063},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/ChenBCGLS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/prl/LiangW07,
author = {Faming Liang and
Naisyin Wang},
title = {Dynamic agglomerative clustering of gene expression profiles},
journal = {Pattern Recognit. Lett.},
volume = {28},
number = {9},
pages = {1062--1076},
year = {2007},
url = {https://doi.org/10.1016/j.patrec.2007.01.009},
doi = {10.1016/J.PATREC.2007.01.009},
timestamp = {Sat, 22 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/prl/LiangW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HoHYH07,
author = {Shinn{-}Ying Ho and
Chih{-}Hung Hsieh and
Fu{-}Chieh Yu and
Hui{-}Ling Huang},
title = {An Intelligent Two-Stage Evolutionary Algorithm for Dynamic Pathway
Identification From Gene Expression Profiles},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {4},
number = {4},
pages = {648--704},
year = {2007},
url = {https://doi.org/10.1109/tcbb.2007.1051},
doi = {10.1109/TCBB.2007.1051},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HoHYH07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ab/CasagrandeCFPRVM07,
author = {Alberto Casagrande and
Kevin Casey and
Rachele Falchi and
Carla Piazza and
Benedetto Ruperti and
Giannina Vizzotto and
Bud Mishra},
editor = {Hirokazu Anai and
Katsuhisa Horimoto and
Temur Kutsia},
title = {Translating Time-Course Gene Expression Profiles into Semi-algebraic
Hybrid Automata Via Dimensionality Reduction},
booktitle = {Algebraic Biology, Second International Conference, {AB} 2007, Castle
of Hagenberg, Austria, July 2-4, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4545},
pages = {51--65},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-73433-8\_5},
doi = {10.1007/978-3-540-73433-8\_5},
timestamp = {Tue, 14 May 2019 10:00:52 +0200},
biburl = {https://dblp.org/rec/conf/ab/CasagrandeCFPRVM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/KimK07,
author = {Sheehyun Kim and
Dongsup Kim},
title = {Inference of Gene Regulatory Networks Using Time Sliding Comparison
and Transcriptional Lagging Time from Time Series Gene Expression
Profiles},
booktitle = {Proceedings of the 7th {IEEE} International Conference on Bioinformatics
and Bioengineering, {BIBE} 2007, October 14-17, 2007, Harvard Medical
School, Boston, MA, {USA}},
pages = {1035--1040},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/BIBE.2007.4375684},
doi = {10.1109/BIBE.2007.4375684},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/KimK07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/SmithSR07,
author = {Brandon J. Smith and
Bruce R. Southey and
Sandra L. Rodriguez{-}Zas},
title = {Smoothing Spline Mixed Effects Modeling of Multifactorial Gene Expression
Profiles},
booktitle = {Proceedings of the {IEEE} International Conference on Bioinformatics
and Biomedicine, {BIBM} 2007, Silicon Valley, CA, USA, November 2-4,
2007},
pages = {325--332},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/BIBM.2007.66},
doi = {10.1109/BIBM.2007.66},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/SmithSR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biocomp/KarmakerHK07,
author = {Amitava Karmaker and
Stephen Harris and
Stephen Kwek},
editor = {Hamid R. Arabnia and
Mary Qu Yang and
Jack Y. Yang},
title = {Identification of cis-Regulatory Elements from Cross-Genome Comparison
and Gene Expression Profile Analysis},
booktitle = {International Conference on Bioinformatics {\&} Computational
Biology, {BIOCOMP} 2007, Volume I, June 25-28, 2007, Las Vegas Nevada,
{USA}},
pages = {31--36},
publisher = {{CSREA} Press},
year = {2007},
timestamp = {Fri, 14 Dec 2007 13:10:25 +0100},
biburl = {https://dblp.org/rec/conf/biocomp/KarmakerHK07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/birthday/SakakibaraYKS07,
author = {Yasubumi Sakakibara and
Takashi Yokomori and
Satoshi Kobayashi and
Akira Suyama},
editor = {Madhavan Mukund and
K. Rangarajan and
K. G. Subramanian},
title = {Probabilistic Inference in Test Tube and its Application to Gene Expression
Profiles},
booktitle = {Formal Models, Languages and Applications [this volume commemorates
the 75th birthday of Prof. Rani Siromoney]},
series = {Series in Machine Perception and Artificial Intelligence},
volume = {66},
pages = {304--319},
publisher = {World Scientific},
year = {2007},
url = {https://doi.org/10.1142/9789812773036\_0021},
doi = {10.1142/9789812773036\_0021},
timestamp = {Tue, 23 May 2017 01:06:47 +0200},
biburl = {https://dblp.org/rec/conf/birthday/SakakibaraYKS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cis/WangCL07,
author = {Shulin Wang and
Huowang Chen and
Shutao Li},
title = {Gene Selection Using Neighborhood Rough Set from Gene Expression Profiles},
booktitle = {Computational Intelligence and Security, International Conference,
{CIS} 2007, Harbin, Heilongjiang, China, December 15-19, 2007},
pages = {959--963},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/CIS.2007.169},
doi = {10.1109/CIS.2007.169},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cis/WangCL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/epia/WangCLZ07,
author = {Shulin Wang and
Huowang Chen and
Shutao Li and
Dingxing Zhang},
editor = {Jos{\'{e}} Neves and
Manuel Filipe Santos and
Jos{\'{e}} Machado},
title = {Feature Extraction from Tumor Gene Expression Profiles Using {DCT}
and {DFT}},
booktitle = {Progress in Artificial Intelligence, 13th Portuguese Conference on
Aritficial Intelligence, {EPIA} 2007, Workshops: GAIW, AIASTS, ALEA,
AMITA, BAOSW, BI, CMBSB, IROBOT, MASTA, STCS, and TEMA, Guimar{\~{a}}es,
Portugal, December 3-7, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4874},
pages = {485--496},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-77002-2\_41},
doi = {10.1007/978-3-540-77002-2\_41},
timestamp = {Tue, 14 May 2019 10:00:41 +0200},
biburl = {https://dblp.org/rec/conf/epia/WangCLZ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/fbit/JinLC07,
author = {Hee{-}Jeong Jin and
Ji{-}Yeon Lee and
Hwan{-}Gue Cho},
editor = {Daniel Howard and
Phill{-}Kyu Rhee},
title = {Detecting Regulator-Target Gene Pairs from Expression Profile of Microarray},
booktitle = {Frontiers in the Convergence of Bioscience and Information Technologies
2007, {FBIT} 2007, Jeju Island, Korea, October 11-13, 2007},
pages = {199--204},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/FBIT.2007.82},
doi = {10.1109/FBIT.2007.82},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/fbit/JinLC07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/Wu07,
author = {Fang{-}Xiang Wu},
editor = {Ion I. Mandoiu and
Alexander Zelikovsky},
title = {Significance Analysis of Time-Course Gene Expression Profiles},
booktitle = {Bioinformatics Research and Applications, Third International Symposium,
{ISBRA} 2007, Atlanta, GA, USA, May 7-10, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4463},
pages = {13--24},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-72031-7\_2},
doi = {10.1007/978-3-540-72031-7\_2},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbra/Wu07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlmta/KarmakerDHK07,
author = {Amitava Karmaker and
Mark Doderer and
Stephen Harris and
Stephen Kwek},
editor = {Hamid R. Arabnia and
Matthias Dehmer and
Frank Emmert{-}Streib and
Mary Qu Yang},
title = {Discovery of Transcription Factors Using Protein Subcellular Localization
Prediction and Gene Expression Profile Analysis},
booktitle = {Proceedings of the 2007 International Conference on Machine Learning;
Models, Technologies {\&} Applications, {MLMTA} 2007, June 25-28,
2007, Las Vegas Nevada, {USA}},
pages = {65--71},
publisher = {{CSREA} Press},
year = {2007},
timestamp = {Fri, 04 Jan 2008 11:07:18 +0100},
biburl = {https://dblp.org/rec/conf/mlmta/KarmakerDHK07.bib},
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@inproceedings{DBLP:conf/recomb/PradinesDRF07,
author = {Jo{\"{e}}l R. Pradines and
Vlado Danc{\'{\i}}k and
Alan Ruttenberg and
Victor Farutin},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Connectedness Profiles in Protein Networks for the Analysis of Gene
Expression Data},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {296--310},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_21},
doi = {10.1007/978-3-540-71681-5\_21},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PradinesDRF07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@incollection{DBLP:books/ws/BMW07-papers/NomanI07,
author = {Nasimul Noman and
Hitoshi Iba},
editor = {Sanghamitra Bandyopadhyay and
Ujjwal Maulik and
Jason Tsong{-}Li Wang},
title = {Inferring Regulations in a Genomic Network from Gene Expression Profiles},
booktitle = {Analysis of Biological Data: {A} Soft Computing Approach},
series = {Science, Engineering, and Biology Informatics},
volume = {3},
pages = {205--229},
publisher = {World Scientific},
year = {2007},
url = {https://doi.org/10.1142/9789812708892\_0009},
doi = {10.1142/9789812708892\_0009},
timestamp = {Wed, 14 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/ws/BMW07-papers/NomanI07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bioinformatics/BansalGB06,
author = {Mukesh Bansal and
Giusy Della Gatta and
Diego di Bernardo},
title = {Inference of gene regulatory networks and compound mode of action
from time course gene expression profiles},
journal = {Bioinform.},
volume = {22},
number = {7},
pages = {815--822},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl003},
doi = {10.1093/BIOINFORMATICS/BTL003},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BansalGB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bioinformatics/Buturovic06,
author = {Ljubomir J. Buturovic},
title = {{PCP:} a program for supervised classification of gene expression
profiles},
journal = {Bioinform.},
volume = {22},
number = {2},
pages = {245--247},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/bti760},
doi = {10.1093/BIOINFORMATICS/BTI760},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Buturovic06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuSYGBM06,
author = {Xiangdong Liu and
Siva Sivaganesan and
Ka Yee Yeung and
Junhai Guo and
Roger Eugene Bumgarner and
Mario Medvedovic},
title = {Context-specific infinite mixtures for clustering gene expression
profiles across diverse microarray dataset},
journal = {Bioinform.},
volume = {22},
number = {14},
pages = {1737--1744},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl184},
doi = {10.1093/BIOINFORMATICS/BTL184},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuSYGBM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NgMWJN06,
author = {Shu{-}Kay Ng and
Geoffrey J. McLachlan and
Kui Wang and
Liat Ben{-}Tovim Jones and
S.{-}W. Ng},
title = {A Mixture model with random-effects components for clustering correlated
gene-expression profiles},
journal = {Bioinform.},
volume = {22},
number = {14},
pages = {1745--1752},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl165},
doi = {10.1093/BIOINFORMATICS/BTL165},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NgMWJN06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PrietoRSLR06,
author = {Carlos Prieto and
M. J. Rivas and
J. M. S{\'{a}}nchez and
Jes{\'{u}}s L{\'{o}}pez{-}Fidalgo and
Javier De Las Rivas},
title = {Algorithm to find gene expression profiles of deregulation and identify
families of disease-altered genes},
journal = {Bioinform.},
volume = {22},
number = {9},
pages = {1103--1110},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl053},
doi = {10.1093/BIOINFORMATICS/BTL053},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PrietoRSLR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TanSHXTFW06,
author = {Yongxi Tan and
Leming M. Shi and
Saber M. Hussain and
Jun Xu and
Weida Tong and
John M. Frazier and
Charles Wang},
title = {Integrating time-course microarray gene expression profiles with cytotoxicity
for identification of biomarkers in primary rat hepatocytes exposed
to cadmium},
journal = {Bioinform.},
volume = {22},
number = {1},
pages = {77--87},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/bti737},
doi = {10.1093/BIOINFORMATICS/BTI737},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TanSHXTFW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangLGLLZYXWRY06,
author = {Dong Wang and
Yingli Lv and
Zheng Guo and
Xia Li and
Yanhui Li and
Jing Zhu and
Da Yang and
Jianzhen Xu and
Chenguang Wang and
Shaoqi Rao and
Baofeng Yang},
title = {Effects of replacing the unreliable cDNA microarray measurements on
the disease classification based on gene expression profiles and functional
modules},
journal = {Bioinform.},
volume = {22},
number = {23},
pages = {2883--2889},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl339},
doi = {10.1093/BIOINFORMATICS/BTL339},
timestamp = {Thu, 06 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangLGLLZYXWRY06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YoshidaHIM06,
author = {Ryo Yoshida and
Tomoyuki Higuchi and
Seiya Imoto and
Satoru Miyano},
title = {ArrayCluster: an analytic tool for clustering, data visualization
and module finder on gene expression profiles},
journal = {Bioinform.},
volume = {22},
number = {12},
pages = {1538--1539},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl129},
doi = {10.1093/BIOINFORMATICS/BTL129},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YoshidaHIM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenGZSFSFM06,
author = {Tao Chen and
Lei Guo and
Lu Zhang and
Leming M. Shi and
Hong Fang and
Yongming Sun and
James C. Fuscoe and
Nan Mei},
title = {Gene Expression Profiles Distinguish the Carcinogenic Effects of Aristolochic
Acid in Target (Kidney) and Non-target (Liver) Tissues in Rats},
journal = {{BMC} Bioinform.},
volume = {7},
number = {{S-2}},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-S2-S20},
doi = {10.1186/1471-2105-7-S2-S20},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenGZSFSFM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DohertyCM06,
author = {Jason M. Doherty and
Lynn K. Carmichael and
Jason C. Mills},
title = {GOurmet: {A} tool for quantitative comparison and visualization of
gene expression profiles based on gene ontology {(GO)} distributions},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {151},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-151},
doi = {10.1186/1471-2105-7-151},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DohertyCM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bmcbi/HaaftenSJEDSSWPE06,
author = {Rachel I. M. van Haaften and
Blanche Schroen and
Ben J. A. Janssen and
Arie van Erk and
Jacques J. M. Debets and
Hubert J. M. Smeets and
Jos F. M. Smits and
Arthur van den Wijngaard and
Yigal M. Pinto and
Chris T. A. Evelo},
title = {Biologically relevant effects of mRNA amplification on gene expression
profiles},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {200},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-200},
doi = {10.1186/1471-2105-7-200},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HaaftenSJEDSSWPE06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RuzanovJ06,
author = {Peter Ruzanov and
Steven J. M. Jones},
title = {An interactive tool for visualization of relationships between gene
expression profiles},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {193},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-193},
doi = {10.1186/1471-2105-7-193},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RuzanovJ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VerhaakSBDHMSLV06,
author = {Roel G. W. Verhaak and
Mathijs A. Sanders and
Maarten A. Bijl and
Ruud Delwel and
Sebastiaan Horsman and
Michael J. Moorhouse and
Peter J. van der Spek and
Bob L{\"{o}}wenberg and
Peter J. M. Valk},
title = {HeatMapper: powerful combined visualization of gene expression profile
correlations, genotypes, phenotypes and sample characteristics},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {337},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-337},
doi = {10.1186/1471-2105-7-337},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/VerhaakSBDHMSLV06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijbra/MathurDS06,
author = {Sunil K. Mathur and
Atul M. Doke and
Ajit Sadana},
title = {Identification of hair cycle-associated genes from time-course gene
expression profile using fractal analysis},
journal = {Int. J. Bioinform. Res. Appl.},
volume = {2},
number = {3},
pages = {249--258},
year = {2006},
url = {https://doi.org/10.1504/IJBRA.2006.010603},
doi = {10.1504/IJBRA.2006.010603},
timestamp = {Fri, 11 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijbra/MathurDS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/prl/ZhangZ06,
author = {Qiong Zhang and
Yingsha Zhang},
title = {Hierarchical clustering of gene expression profiles with graphics
hardware acceleration},
journal = {Pattern Recognit. Lett.},
volume = {27},
number = {6},
pages = {676--681},
year = {2006},
url = {https://doi.org/10.1016/j.patrec.2005.06.016},
doi = {10.1016/J.PATREC.2005.06.016},
timestamp = {Sat, 22 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/prl/ZhangZ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ai/BariR06,
author = {Ataul Bari and
Luis Rueda},
editor = {Luc Lamontagne and
Mario Marchand},
title = {A New Profile Alignment Method for Clustering Gene Expression Data},
booktitle = {Advances in Artificial Intelligence, 19th Conference of the Canadian
Society for Computational Studies of Intelligence, Canadian {AI} 2006,
Qu{\'{e}}bec City, Qu{\'{e}}bec, Canada, June 7-9, 2006,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4013},
pages = {86--97},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11766247\_8},
doi = {10.1007/11766247\_8},
timestamp = {Thu, 28 Sep 2023 12:27:07 +0200},
biburl = {https://dblp.org/rec/conf/ai/BariR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/annpr/KestlerLM06,
author = {Hans A. Kestler and
Wolfgang Lindner and
Andr{\'{e}} M{\"{u}}ller},
editor = {Friedhelm Schwenker and
Simone Marinai},
title = {Learning and Feature Selection Using the Set Covering Machine with
Data-Dependent Rays on Gene Expression Profiles},
booktitle = {Artificial Neural Networks in Pattern Recognition, Second {IAPR} Workshop,
{ANNPR} 2006, Ulm, Germany, August 31-September 2, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4087},
pages = {286--297},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11829898\_26},
doi = {10.1007/11829898\_26},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/annpr/KestlerLM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@inproceedings{DBLP:conf/ausai/ZhangLXG06,
author = {Chen Zhang and
Yanchun Liang and
Wei Xiong and
Hong{-}Wei Ge},
editor = {Abdul Sattar and
Byeong{-}Ho Kang},
title = {Selection for Feature Gene Subset in Microarray Expression Profiles
Based on an Improved Genetic Algorithm},
booktitle = {{AI} 2006: Advances in Artificial Intelligence, 19th Australian Joint
Conference on Artificial Intelligence, Hobart, Australia, December
4-8, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4304},
pages = {161--169},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11941439\_20},
doi = {10.1007/11941439\_20},
timestamp = {Mon, 04 Nov 2019 12:36:13 +0100},
biburl = {https://dblp.org/rec/conf/ausai/ZhangLXG06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cec/NomanI06,
author = {Nasimul Noman and
Hitoshi Iba},
title = {On the Reconstruction of Gene Regulatory Networks from Noisy Expression
Profiles},
booktitle = {{IEEE} International Conference on Evolutionary Computation, {CEC}
2006, part of {WCCI} 2006, Vancouver, BC, Canada, 16-21 July 2006},
pages = {2543--2550},
publisher = {{IEEE}},
year = {2006},
url = {https://doi.org/10.1109/CEC.2006.1688625},
doi = {10.1109/CEC.2006.1688625},
timestamp = {Thu, 16 Dec 2021 14:00:41 +0100},
biburl = {https://dblp.org/rec/conf/cec/NomanI06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/grc/Al-MubaidG06,
author = {Hisham Al{-}Mubaid and
Noushin Ghaffari},
title = {Identifying the most significant genes from gene expression profiles
for sample classification},
booktitle = {2006 {IEEE} International Conference on Granular Computing, GrC 2006,
Atlanta, Georgia, USA, May 10-12, 2006},
pages = {655--658},
publisher = {{IEEE}},
year = {2006},
url = {https://doi.org/10.1109/GRC.2006.1635887},
doi = {10.1109/GRC.2006.1635887},
timestamp = {Wed, 16 Oct 2019 14:14:49 +0200},
biburl = {https://dblp.org/rec/conf/grc/Al-MubaidG06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icde/XuLTW06,
author = {Xin Xu and
Ying Lu and
Anthony K. H. Tung and
Wei Wang},
editor = {Ling Liu and
Andreas Reuter and
Kyu{-}Young Whang and
Jianjun Zhang},
title = {Mining Shifting-and-Scaling Co-Regulation Patterns on Gene Expression
Profiles},
booktitle = {Proceedings of the 22nd International Conference on Data Engineering,
{ICDE} 2006, 3-8 April 2006, Atlanta, GA, {USA}},
pages = {89},
publisher = {{IEEE} Computer Society},
year = {2006},
url = {https://doi.org/10.1109/ICDE.2006.98},
doi = {10.1109/ICDE.2006.98},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icde/XuLTW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ideal/Rubio-EscuderoVCZ06,
author = {Cristina Rubio{-}Escudero and
Coral del Val and
Oscar Cord{\'{o}}n and
Igor Zwir},
editor = {Emilio Corchado and
Hujun Yin and
Vicente J. Botti and
Colin Fyfe},
title = {Decision Making Association Rules for Recognition of Differential
Gene Expression Profiles},
booktitle = {Intelligent Data Engineering and Automated Learning - {IDEAL} 2006,
7th International Conference, Burgos, Spain, September 20-23, 2006,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4224},
pages = {1137--1149},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11875581\_135},
doi = {10.1007/11875581\_135},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ideal/Rubio-EscuderoVCZ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isda/WangWCT06,
author = {Shulin Wang and
Ji Wang and
Huowang Chen and
Wensheng Tang},
title = {The Classification of Tumor Using Gene Expression Profile Based on
Support Vector Machines and Factor Analysis},
booktitle = {Proceedings of the Sixth International Conference on Intelligent Systems
Design and Applications {(ISDA} 2006), October 16-18, 2006, Jinan,
China},
pages = {471--476},
publisher = {{IEEE} Computer Society},
year = {2006},
url = {https://doi.org/10.1109/ISDA.2006.253882},
doi = {10.1109/ISDA.2006.253882},
timestamp = {Fri, 04 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isda/WangWCT06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/EdelmanPGBBFM06,
author = {Elena J. Edelman and
Alessandro Porrello and
Justin Guinney and
Bala Balakumaran and
Andrea Bild and
Phillip G. Febbo and
Sayan Mukherjee},
title = {Analysis of sample set enrichment scores: assaying the enrichment
of sets of genes for individual samples in genome-wide expression
profiles},
booktitle = {Proceedings 14th International Conference on Intelligent Systems for
Molecular Biology 2006, Fortaleza, Brazil, August 6-10, 2006},
pages = {122--116},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl231},
doi = {10.1093/BIOINFORMATICS/BTL231},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/EdelmanPGBBFM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/QiMKHJGG06,
author = {Yuan (Alan) Qi and
Patrycja E. Missiuro and
Ashish Kapoor and
Craig P. Hunter and
Tommi S. Jaakkola and
David K. Gifford and
Hui Ge},
title = {Semi-supervised analysis of gene expression profiles for lineage-specific
development in the \emph{Caenorhabditis elegans} embryo},
booktitle = {Proceedings 14th International Conference on Intelligent Systems for
Molecular Biology 2006, Fortaleza, Brazil, August 6-10, 2006},
pages = {417--423},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl256},
doi = {10.1093/BIOINFORMATICS/BTL256},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/QiMKHJGG06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ispa/XiongZZL06,
author = {Wei Xiong and
Chen Zhang and
Chunguang Zhou and
Yanchun Liang},
editor = {Geyong Min and
Beniamino Di Martino and
Laurence Tianruo Yang and
Minyi Guo and
Gudula R{\"{u}}nger},
title = {Selection for Feature Gene Subset in Microarray Expression Profiles
Based on a Hybrid Algorithm Using {SVM} and {GA}},
booktitle = {Frontiers of High Performance Computing and Networking - {ISPA} 2006
Workshops, {ISPA} 2006 International Workshops, FHPCN, XHPC, S-GRACE,
GridGIS, HPC-GTP, PDCE, ParDMCom, WOMP, ISDF, and UPWN, Sorrento,
Italy, December 4-7, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4331},
pages = {637--647},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11942634\_66},
doi = {10.1007/11942634\_66},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/ispa/XiongZZL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pakdd/JinXBG06,
author = {Xin Jin and
Anbang Xu and
Rongfang Bie and
Ping Guo},
editor = {Jinyan Li and
Qiang Yang and
Ah{-}Hwee Tan},
title = {Machine Learning Techniques and Chi-Square Feature Selection for Cancer
Classification Using {SAGE} Gene Expression Profiles},
booktitle = {Data Mining for Biomedical Applications, {PAKDD} 2006 Workshop, BioDM
2006, Singapore, April 9, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3916},
pages = {106--115},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11691730\_11},
doi = {10.1007/11691730\_11},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/pakdd/JinXBG06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pakdd/KimK06,
author = {Dae{-}Won Kim and
Bo{-}Yeong Kang},
editor = {Wee Keong Ng and
Masaru Kitsuregawa and
Jianzhong Li and
Kuiyu Chang},
title = {Iterative Clustering Analysis for Grouping Missing Data in Gene Expression
Profiles},
booktitle = {Advances in Knowledge Discovery and Data Mining, 10th Pacific-Asia
Conference, {PAKDD} 2006, Singapore, April 9-12, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3918},
pages = {129--138},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11731139\_17},
doi = {10.1007/11731139\_17},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/pakdd/KimK06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ppswr/Badea06,
author = {Liviu Badea},
editor = {Jos{\'{e}} J{\'{u}}lio Alferes and
James Bailey and
Wolfgang May and
Uta Schwertel},
title = {Semantic Web Reasoning for Analyzing Gene Expression Profiles},
booktitle = {Principles and Practice of Semantic Web Reasoning, 4th International
Workshop, {PPSWR} 2006, Budva, Montenegro, June 10-11, 2006, Revised
Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4187},
pages = {78--89},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11853107\_6},
doi = {10.1007/11853107\_6},
timestamp = {Wed, 25 Sep 2019 18:02:49 +0200},
biburl = {https://dblp.org/rec/conf/ppswr/Badea06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/BorgwardtVK06,
author = {Karsten M. Borgwardt and
S. V. N. Vishwanathan and
Hans{-}Peter Kriegel},
editor = {Russ B. Altman and
Tiffany Murray and
Teri E. Klein and
A. Keith Dunker and
Lawrence Hunter},
title = {Class Prediction from Time Series Gene Expression Profiles Using Dynamical
Systems Kernels},
booktitle = {Biocomputing 2006, Proceedings of the Pacific Symposium, Maui, Hawaii,
USA, 3-7 January 2006},
pages = {547--558},
publisher = {World Scientific},
year = {2006},
url = {http://psb.stanford.edu/psb-online/proceedings/psb06/borgwardt.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/BorgwardtVK06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/ImotoTAYPCSSTKM06,
author = {Seiya Imoto and
Yoshinori Tamada and
Hiromitsu Araki and
Kaori Yasuda and
Cristin G. Print and
Stephen D. Charnock{-}Jones and
Deborah Sanders and
Christopher J. Savoie and
Kousuke Tashiro and
Satoru Kuhara and
Satoru Miyano},
editor = {Russ B. Altman and
Tiffany Murray and
Teri E. Klein and
A. Keith Dunker and
Lawrence Hunter},
title = {Computational Strategy for Discovering Druggable Gene Networks from
Genome-Wide {RNA} Expression Profiles},
booktitle = {Biocomputing 2006, Proceedings of the Pacific Symposium, Maui, Hawaii,
USA, 3-7 January 2006},
pages = {559--571},
publisher = {World Scientific},
year = {2006},
url = {http://psb.stanford.edu/psb-online/proceedings/psb06/imoto.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/ImotoTAYPCSSTKM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KaminskiB06,
author = {Naftali Kaminski and
Ziv Bar{-}Joseph},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A Patient-Gene Model for Temporal Expression Profiles in Clinical
Studies},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {69--82},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_6},
doi = {10.1007/11732990\_6},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KaminskiB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangRS06,
author = {Ling Wang and
Marco Ramoni and
Paola Sebastiani},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Clustering Short Gene Expression Profiles},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {60--68},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_5},
doi = {10.1007/11732990\_5},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WangRS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/sci/TsengC06,
author = {Vincent S. Tseng and
Yen{-}Lo Chen},
editor = {Tsau Young Lin and
Setsuo Ohsuga and
Churn{-}Jung Liau and
Xiaohua Hu},
title = {An Effective Approach for Mining Time-Series Gene Expression Profile},
booktitle = {Foundations and Novel Approaches in Data Mining},
series = {Studies in Computational Intelligence},
volume = {9},
pages = {363--376},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11539827\_20},
doi = {10.1007/11539827\_20},
timestamp = {Fri, 09 Apr 2021 17:11:04 +0200},
biburl = {https://dblp.org/rec/series/sci/TsengC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BhardwajL05,
author = {Nitin Bhardwaj and
Hui Lu},
title = {Correlation between gene expression profiles and protein-protein interactions
within and across genomes},
journal = {Bioinform.},
volume = {21},
number = {11},
pages = {2730--2738},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti398},
doi = {10.1093/BIOINFORMATICS/BTI398},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BhardwajL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BhasiFR05,
author = {Kavitha Bhasi and
Alan Forrest and
Murali Ramanathan},
title = {{SPLINDID:} a semi-parametric, model-based method for obtaining transcription
rates and gene regulation parameters from genomic and proteomic expression
profiles},
journal = {Bioinform.},
volume = {21},
number = {20},
pages = {3873--3879},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti624},
doi = {10.1093/BIOINFORMATICS/BTI624},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BhasiFR05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CarauxP05,
author = {Gilles Caraux and
Sylvie Pinloche},
title = {PermutMatrix: a graphical environment to arrange gene expression profiles
in optimal linear order},
journal = {Bioinform.},
volume = {21},
number = {7},
pages = {1280--1281},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti141},
doi = {10.1093/BIOINFORMATICS/BTI141},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CarauxP05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PintoCHRA05,
author = {Francisco R. Pinto and
L. Ashley Cowart and
Yusuf A. Hannun and
B{\"{a}}rbel Rohrer and
Jonas S. Almeida},
title = {Local correlation of expression profiles with gene annotations-proof
of concept for a general conciliatory method},
journal = {Bioinform.},
volume = {21},
number = {7},
pages = {1037--1045},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti074},
doi = {10.1093/BIOINFORMATICS/BTI074},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PintoCHRA05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TanNXWG05,
author = {Aik Choon Tan and
Daniel Q. Naiman and
Lei Xu and
Raimond L. Winslow and
Donald Geman},
title = {Simple decision rules for classifying human cancers from gene expression
profiles},
journal = {Bioinform.},
volume = {21},
number = {20},
pages = {3896--3904},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti631},
doi = {10.1093/BIOINFORMATICS/BTI631},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TanNXWG05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GuoZLWXYZWWTWR05,
author = {Zheng Guo and
Tianwen Zhang and
Xia Li and
Qi Wang and
Jianzhen Xu and
Hui Yu and
Jing Zhu and
Haiyun Wang and
Chenguang Wang and
Eric J. Topol and
Qing Wang and
Shaoqi Rao},
title = {Towards precise classification of cancers based on robust gene functional
expression profiles},
journal = {{BMC} Bioinform.},
volume = {6},
pages = {58},
year = {2005},
url = {https://doi.org/10.1186/1471-2105-6-58},
doi = {10.1186/1471-2105-6-58},
timestamp = {Thu, 06 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GuoZLWXYZWWTWR05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuGB05,
author = {Pingzhao Hu and
Celia M. T. Greenwood and
Joseph Beyene},
title = {Integrative analysis of multiple gene expression profiles with quality-adjusted
effect size models},
journal = {{BMC} Bioinform.},
volume = {6},
pages = {128},
year = {2005},
url = {https://doi.org/10.1186/1471-2105-6-128},
doi = {10.1186/1471-2105-6-128},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuGB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuangPGHCPMH05,
author = {Xiaohong Huang and
Wei Pan and
Suzanne Grindle and
Xinqiang Han and
Yingjie Chen and
Soon J. Park and
Leslie W. Miller and
Jennifer Hall},
title = {A comparative study of discriminating human heart failure etiology
using gene expression profiles},
journal = {{BMC} Bioinform.},
volume = {6},
pages = {205},
year = {2005},
url = {https://doi.org/10.1186/1471-2105-6-205},
doi = {10.1186/1471-2105-6-205},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuangPGHCPMH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/KoXW05,
author = {Daijin Ko and
Wanyan Xu and
Brad Windle},
title = {Gene function classification using {NCI-60} cell line gene expression
profiles},
journal = {Comput. Biol. Chem.},
volume = {29},
number = {6},
pages = {412--419},
year = {2005},
url = {https://doi.org/10.1016/j.compbiolchem.2005.09.003},
doi = {10.1016/J.COMPBIOLCHEM.2005.09.003},
timestamp = {Wed, 22 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/candc/KoXW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijait/KuramochiK05,
author = {Michihiro Kuramochi and
George Karypis},
title = {Gene Classification Using Expression Profiles: {A} Feasibility Study},
journal = {Int. J. Artif. Intell. Tools},
volume = {14},
number = {4},
pages = {641--660},
year = {2005},
url = {https://doi.org/10.1142/S0218213005002302},
doi = {10.1142/S0218213005002302},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijait/KuramochiK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijait/YangWWY05,
author = {Jiong Yang and
Haixun Wang and
Wei Wang and
Philip S. Yu},
title = {An Improved Biclustering Method for Analyzing Gene Expression Profiles},
journal = {Int. J. Artif. Intell. Tools},
volume = {14},
number = {5},
pages = {771--790},
year = {2005},
url = {https://doi.org/10.1142/S0218213005002387},
doi = {10.1142/S0218213005002387},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijait/YangWWY05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/SacchiBLMCPZ05,
author = {Lucia Sacchi and
Riccardo Bellazzi and
Cristiana Larizza and
Paolo Magni and
Tomaz Curk and
Uros Petrovic and
Blaz Zupan},
title = {TA-clustering: Cluster analysis of gene expression profiles through
Temporal Abstractions},
journal = {Int. J. Medical Informatics},
volume = {74},
number = {7-8},
pages = {505--517},
year = {2005},
url = {https://doi.org/10.1016/j.ijmedinf.2005.03.014},
doi = {10.1016/J.IJMEDINF.2005.03.014},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijmi/SacchiBLMCPZ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BerrarSBDD05,
author = {Daniel P. Berrar and
Brian Sturgeon and
Ian Bradbury and
C. Stephen Downes and
Werner Dubitzky},
title = {Survival Trees for Analyzing Clinical Outcome in Lung Adenocarcinomas
Based on Gene Expression Profiles: Identification of Neogenin and
Diacylglycerol Kinase Expression as Critical Factors},
journal = {J. Comput. Biol.},
volume = {12},
number = {5},
pages = {534--544},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.534},
doi = {10.1089/CMB.2005.12.534},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/BerrarSBDD05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/XuB05,
author = {Yun Xu and
Richard G. Brereton},
title = {Diagnostic Pattern Recognition on Gene-Expression Profile Data by
Using One-Class Classification},
journal = {J. Chem. Inf. Model.},
volume = {45},
number = {5},
pages = {1392--1401},
year = {2005},
url = {https://doi.org/10.1021/ci049726v},
doi = {10.1021/CI049726V},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/XuB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AburataniGSTH05,
author = {Sachiyo Aburatani and
Kousuke Goto and
Shigeru Saito and
Hiroyuki Toh and
Katsuhisa Horimoto},
title = {{ASIAN:} a web server for inferring a regulatory network framework
from gene expression profiles},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Web-Server-Issue},
pages = {659--664},
year = {2005},
url = {https://doi.org/10.1093/nar/gki446},
doi = {10.1093/NAR/GKI446},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AburataniGSTH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BoorsmaFVKB05,
author = {Andr{\'{e}} Boorsma and
Barrett C. Foat and
Daniel J. Vis and
Frans Klis and
Harmen J. Bussemaker},
title = {T-profiler: scoring the activity of predefined groups of genes using
gene expression data},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Web-Server-Issue},
pages = {592--595},
year = {2005},
url = {https://doi.org/10.1093/nar/gki484},
doi = {10.1093/NAR/GKI484},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BoorsmaFVKB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/Pascual-MontanoTCCP05,
author = {Alberto D. Pascual{-}Montano and
Francisco Tirado and
Pedro Carmona{-}Saez and
Jos{\'{e}} Mar{\'{\i}}a Carazo and
Roberto D. Pascual{-}Marqui},
title = {Two-way clustering of gene expression profiles by sparse matrix factorization},
booktitle = {Fourth International {IEEE} Computer Society Computational Systems
Bioinformatics Conference Workshops {\&} Poster Abstracts, {CSB}
2005 Workshops, Stanford, CA, USA, August 8-11, 2005},
pages = {103--104},
publisher = {{IEEE} Computer Society},
year = {2005},
url = {https://doi.org/10.1109/CSBW.2005.137},
doi = {10.1109/CSBW.2005.137},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/Pascual-MontanoTCCP05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccb/VoglSSHWT05,
author = {C. Vogl and
F{\'{a}}tima S{\'{a}}nchez{-}Cabo and
Gernot Stocker and
Simon J. Hubbard and
Olaf Wolkenhauer and
Zlatko Trajanoski},
title = {A fully Bayesian model to cluster gene-expression profiles},
booktitle = {ECCB/JBI'05 Proceedings, Fourth European Conference on Computational
Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas
de BioInform{\'{a}}tica), Palacio de Congresos, Madrid, Spain,
September 28 - October 1, 2005},
pages = {136},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti1122},
doi = {10.1093/BIOINFORMATICS/BTI1122},
timestamp = {Fri, 27 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/eccb/VoglSSHWT05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/fskd/LvWZWWL05,
author = {Sali Lv and
Qianghu Wang and
Guangmei Zhang and
Fengxia Wen and
Zhenzhen Wang and
Xia Li},
editor = {Lipo Wang and
Yaochu Jin},
title = {A New Method for Gene Functional Prediction Based on Homologous Expression
Profile},
booktitle = {Fuzzy Systems and Knowledge Discovery, Second International Conference,
{FSKD} 2005, Changsha, China, August 27-29, 2005, Proceedings, Part
{II}},
series = {Lecture Notes in Computer Science},
volume = {3614},
pages = {836--844},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11540007\_104},
doi = {10.1007/11540007\_104},
timestamp = {Tue, 14 May 2019 10:00:54 +0200},
biburl = {https://dblp.org/rec/conf/fskd/LvWZWWL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icic/WangZB05,
author = {Weiqiang Wang and
Yanhong Zhou and
Ran Bi},
editor = {De{-}Shuang Huang and
Xiao{-}Ping (Steven) Zhang and
Guang{-}Bin Huang},
title = {Correlating Genes and Functions to Human Disease by Systematic Differential
Analysis of Expression Profiles},
booktitle = {Advances in Intelligent Computing, International Conference on Intelligent
Computing, {ICIC} 2005, Hefei, China, August 23-26, 2005, Proceedings,
Part {II}},
series = {Lecture Notes in Computer Science},
volume = {3645},
pages = {11--20},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11538356\_2},
doi = {10.1007/11538356\_2},
timestamp = {Thu, 12 Dec 2019 16:43:34 +0100},
biburl = {https://dblp.org/rec/conf/icic/WangZB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iicai/KapilGN05,
author = {Ankur Kapil and
Ravindra D. Gudi and
Santosh B. Noronha},
editor = {Bhanu Prasad},
title = {Projection and Fuzzy Classification Methods for Gene Expression Profile
Analysis},
booktitle = {Proceedings of the 2nd Indian International Conference on Artificial
Intelligence, Pune, India, December 20-22, 2005},
pages = {2212--2230},
publisher = {{IICAI}},
year = {2005},
timestamp = {Fri, 15 Dec 2023 18:26:01 +0100},
biburl = {https://dblp.org/rec/conf/iicai/KapilGN05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isnn/WuLY05,
author = {Shuanhu Wu and
Alan Wee{-}Chung Liew and
Hong Yan},
editor = {Jun Wang and
Xiaofeng Liao and
Zhang Yi},
title = {OPTOC-Based Clustering Analysis of Gene Expression Profiles in Spectral
Space},
booktitle = {Advances in Neural Networks - {ISNN} 2005, Second International Symposium
on Neural Networks, Chongqing, China, May 30 - June 1, 2005, Proceedings,
Part {III}},
series = {Lecture Notes in Computer Science},
volume = {3498},
pages = {709--718},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11427469\_113},
doi = {10.1007/11427469\_113},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isnn/WuLY05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/premi/ParkC05,
author = {Han{-}Saem Park and
Sung{-}Bae Cho},
editor = {Sankar K. Pal and
Sanghamitra Bandyopadhyay and
Sambhunath Biswas},
title = {Evolutionary Clustering Algorithm with Knowledge-Based Evaluation
for Fuzzy Cluster Analysis of Gene Expression Profiles},
booktitle = {Pattern Recognition and Machine Intelligence, First International
Conference, PReMI 2005, Kolkata, India, December 20-22, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3776},
pages = {640--644},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11590316\_102},
doi = {10.1007/11590316\_102},
timestamp = {Tue, 14 May 2019 10:00:41 +0200},
biburl = {https://dblp.org/rec/conf/premi/ParkC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KyodaBOK04,
author = {Koji Kyoda and
Kotaro Baba and
Shuichi Onami and
Hiroaki Kitano},
title = {{DBRF-MEGN} method: an algorithm for deducing minimum equivalent gene
networks from large-scale gene expression profiles of gene deletion
mutants},
journal = {Bioinform.},
volume = {20},
number = {16},
pages = {2662--2675},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth306},
doi = {10.1093/BIOINFORMATICS/BTH306},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KyodaBOK04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuoKBYZ04,
author = {Feng Luo and
Latifur Khan and
Farokh B. Bastani and
I{-}Ling Yen and
Jizhong Zhou},
title = {A dynamically growing self-organizing tree {(DGSOT)} for hierarchical
clustering gene expression profiles},
journal = {Bioinform.},
volume = {20},
number = {16},
pages = {2605--2617},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth292},
doi = {10.1093/BIOINFORMATICS/BTH292},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuoKBYZ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SeseKMKM04,
author = {Jun Sese and
Yukinori Kurokawa and
Morito Monden and
Kikuya Kato and
Shinichi Morishita},
title = {Constrained clusters of gene expression profiles with pathological
features},
journal = {Bioinform.},
volume = {20},
number = {17},
pages = {3137--3145},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth373},
doi = {10.1093/BIOINFORMATICS/BTH373},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SeseKMKM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TangZR04,
author = {Chun Tang and
Aidong Zhang and
Murali Ramanathan},
title = {{ESPD:} a pattern detection model underlying gene expression profiles},
journal = {Bioinform.},
volume = {20},
number = {6},
pages = {829--838},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/btg486},
doi = {10.1093/BIOINFORMATICS/BTG486},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TangZR04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PellegrinoPSC04,
author = {Maurizio Pellegrino and
Paolo Provero and
Lorenzo Silengo and
Ferdinando Di Cunto},
title = {{CLOE:} Identification of putative functional relationships among
genes by comparison of expression profiles between two species},
journal = {{BMC} Bioinform.},
volume = {5},
pages = {179},
year = {2004},
url = {https://doi.org/10.1186/1471-2105-5-179},
doi = {10.1186/1471-2105-5-179},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PellegrinoPSC04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpem/AndoI04,
author = {Shin Ando and
Hitoshi Iba},
title = {Classification of Gene Expression Profile Using Combinatory Method
of Evolutionary Computation and Machine Learning},
journal = {Genet. Program. Evolvable Mach.},
volume = {5},
number = {2},
pages = {145--156},
year = {2004},
url = {https://doi.org/10.1023/B:GENP.0000023685.83861.69},
doi = {10.1023/B:GENP.0000023685.83861.69},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gpem/AndoI04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/YipCNC04,
author = {Kevin Y. Yip and
David W. Cheung and
Michael K. Ng and
Kei{-}Hoi Cheung},
title = {Identifying projected clusters from gene expression profiles},
journal = {J. Biomed. Informatics},
volume = {37},
number = {5},
pages = {345--357},
year = {2004},
url = {https://doi.org/10.1016/j.jbi.2004.05.002},
doi = {10.1016/J.JBI.2004.05.002},
timestamp = {Wed, 03 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/YipCNC04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/DejoriS04,
author = {Math{\"{a}}us Dejori and
Martin Stetter},
title = {Identifying Interventional and Pathogenic Mechanisms by Generative
Inverse Modeling of Gene Expression Profiles},
journal = {J. Comput. Biol.},
volume = {11},
number = {6},
pages = {1135--1148},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.1135},
doi = {10.1089/CMB.2004.11.1135},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/DejoriS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KapusheskyKCDIKKTSVB04,
author = {Misha Kapushesky and
Patrick Kemmeren and
Aed{\'{\i}}n C. Culhane and
Steffen Durinck and
Jan Ihmels and
Christine K{\"{o}}rner and
Meelis Kull and
Aurora Torrente and
Ugis Sarkans and
Jaak Vilo and
Alvis Brazma},
title = {Expression Profiler: next generation - an online platform for analysis
of microarray data},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Web-Server-Issue},
pages = {465--470},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh470},
doi = {10.1093/NAR/GKH470},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KapusheskyKCDIKKTSVB04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VoliniaEFACG04,
author = {Stefano Volinia and
Rita Evangelisti and
Francesca Francioso and
Diego Arcelli and
Massimo Carella and
Paolo Gasparini},
title = {{GOAL:} automated Gene Ontology analysis of expression profiles},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Web-Server-Issue},
pages = {492--499},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh443},
doi = {10.1093/NAR/GKH443},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/VoliniaEFACG04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pnas/LinCHSA04,
author = {Kevin K. Lin and
Darya Chudova and
G. Wesley Hatfield and
Padhraic Smyth and
Bogi Andersen},
title = {Identification of hair cycle-associated genes from time-course gene
expression profile data by using replicate variance},
journal = {Proc. Natl. Acad. Sci. {USA}},
volume = {101},
number = {45},
pages = {15955--15960},
year = {2004},
url = {https://doi.org/10.1073/pnas.0407114101},
doi = {10.1073/PNAS.0407114101},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/pnas/LinCHSA04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/YipCNC04,
author = {Kevin Y. Yip and
David W. Cheung and
Michael K. Ng and
Kei{-}Hoi Cheung},
title = {Identifying Projected Clusters from Gene Expression Profiles},
booktitle = {4th {IEEE} International Symposium on BioInformatics and BioEngineering
{(BIBE} 2004), 19-21 March 2004, Taichung, Taiwan},
pages = {259--266},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/BIBE.2004.1317352},
doi = {10.1109/BIBE.2004.1317352},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/YipCNC04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cec/SpeerSZ04,
author = {Nora Speer and
Christian Spieth and
Andreas Zell},
title = {A memetic co-clustering algorithm for gene expression profiles and
biological annotation},
booktitle = {Proceedings of the {IEEE} Congress on Evolutionary Computation, {CEC}
2004, 19-23 June 2004, Portland, OR, {USA}},
pages = {1631--1638},
publisher = {{IEEE}},
year = {2004},
url = {https://doi.org/10.1109/CEC.2004.1331091},
doi = {10.1109/CEC.2004.1331091},
timestamp = {Thu, 16 Dec 2021 13:58:46 +0100},
biburl = {https://dblp.org/rec/conf/cec/SpeerSZ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibcb/Seker04,
author = {Huseyin Seker},
title = {A multifuzzy filtering approach to reliable gene expression profile
analysis},
booktitle = {Proceedings of the 2004 {IEEE} Symposium on Computational Intelligence
in Bioinformatics and Computational Biology, {CIBCB} 2004, La Jolla,
CA, USA, October 7-8, 2004},
pages = {37--40},
publisher = {{IEEE}},
year = {2004},
url = {https://doi.org/10.1109/CIBCB.2004.1393929},
doi = {10.1109/CIBCB.2004.1393929},
timestamp = {Wed, 16 Oct 2019 14:14:48 +0200},
biburl = {https://dblp.org/rec/conf/cibcb/Seker04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/LiuWY04,
author = {Jinze Liu and
Wei Wang and
Jiong Yang},
title = {Gene Ontology Friendly Biclustering of Expression Profiles},
booktitle = {3rd International {IEEE} Computer Society Computational Systems Bioinformatics
Conference, {CSB} 2004, Stanford, CA, USA, August 16-19, 2004},
pages = {436--447},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/CSB.2004.1332456},
doi = {10.1109/CSB.2004.1332456},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/LiuWY04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hicss/XueLS04,
author = {Rui Xue and
Jianying Li and
Dennis J. Streveler},
title = {Microarray Gene Expression Profile Data Mining Model for Clinical
Cancer Research},
booktitle = {37th Hawaii International Conference on System Sciences {(HICSS-37}
2004), {CD-ROM} / Abstracts Proceedings, 5-8 January 2004, Big Island,
HI, {USA}},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/HICSS.2004.1265356},
doi = {10.1109/HICSS.2004.1265356},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hicss/XueLS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/his/RazaGGC04,
author = {Mansoor Raza and
Iqbal Gondal and
David G. Green and
Ross L. Coppel},
editor = {Masumi Ishikawa and
Shuji Hashimoto and
Marcin Paprzycki and
Emilia I. Barakova and
Kaori Yoshida and
Mario K{\"{o}}ppen and
David W. Corne and
Ajith Abraham},
title = {Feature Selection and Classification of Gene Expression Profile in
Hereditary Breast Cancer},
booktitle = {4th International Conference on Hybrid Intelligent Systems {(HIS}
2004), 5-8 December 2004, Kitakyushu, Japan},
pages = {315--320},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/ICHIS.2004.44},
doi = {10.1109/ICHIS.2004.44},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/his/RazaGGC04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icarcv/Tseng04,
author = {G. C. Tseng},
title = {A comparative review of gene clustering in expression profile},
booktitle = {8th International Conference on Control, Automation, Robotics and
Vision, {ICARCV} 2004, Kunming, China, 6-9 December 2004, Proceedings},
pages = {1320--1324},
publisher = {{IEEE}},
year = {2004},
url = {https://doi.org/10.1109/ICARCV.2004.1469037},
doi = {10.1109/ICARCV.2004.1469037},
timestamp = {Wed, 16 Oct 2019 14:14:52 +0200},
biburl = {https://dblp.org/rec/conf/icarcv/Tseng04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kelsi/TanasaLT04,
author = {Doru Tanasa and
Jes{\'{u}}s A. L{\'{o}}pez and
Brigitte Trousse},
editor = {Jes{\'{u}}s A. L{\'{o}}pez and
Emilio Benfenati and
Werner Dubitzky},
title = {Extracting Sequential Patterns for Gene Regulatory Expressions Profiles},
booktitle = {Knowledge Exploration in Life Science Informatics, International Symposium,KELSI
2004, Milan, Italy, November 25-26, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3303},
pages = {46--57},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30478-4\_5},
doi = {10.1007/978-3-540-30478-4\_5},
timestamp = {Tue, 14 May 2019 10:00:43 +0200},
biburl = {https://dblp.org/rec/conf/kelsi/TanasaLT04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kes/ShinP04,
author = {Miyoung Shin and
Seon Hee Park},
editor = {Mircea Gh. Negoita and
Robert J. Howlett and
Lakhmi C. Jain},
title = {Cluster Analysis of Gene Expression Profiles Using Automatically Extracted
Seeds},
booktitle = {Knowledge-Based Intelligent Information and Engineering Systems, 8th
International Conference, {KES} 2004, Wellington, New Zealand, September
20-25, 2004. Proceedings. Part {III}},
series = {Lecture Notes in Computer Science},
volume = {3215},
pages = {263--269},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30134-9\_36},
doi = {10.1007/978-3-540-30134-9\_36},
timestamp = {Tue, 14 May 2019 10:00:51 +0200},
biburl = {https://dblp.org/rec/conf/kes/ShinP04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pricai/ParkYC04,
author = {Han{-}Saem Park and
Si{-}Ho Yoo and
Sung{-}Bae Cho},
editor = {Chengqi Zhang and
Hans W. Guesgen and
Wai{-}Kiang Yeap},
title = {A Fuzzy Clustering Algorithm for Analysis of Gene Expression Profiles},
booktitle = {{PRICAI} 2004: Trends in Artificial Intelligence, 8th Pacific Rim
International Conference on Artificial Intelligence, Auckland, New
Zealand, August 9-13, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3157},
pages = {967--968},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-28633-2\_117},
doi = {10.1007/978-3-540-28633-2\_117},
timestamp = {Tue, 14 May 2019 10:00:46 +0200},
biburl = {https://dblp.org/rec/conf/pricai/ParkYC04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/setn/PotamiasKM04,
author = {George Potamias and
Lefteris Koumakis and
Vassilis Moustakis},
editor = {George A. Vouros and
Themis Panayiotopoulos},
title = {Gene Selection via Discretized Gene-Expression Profiles and Greedy
Feature-Elimination},
booktitle = {Methods and Applications of Artificial Intelligence, Third Helenic
Conference on AI, {SETN} 2004, Samos, Greece, May 5-8, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3025},
pages = {256--266},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-24674-9\_27},
doi = {10.1007/978-3-540-24674-9\_27},
timestamp = {Tue, 14 May 2019 10:00:51 +0200},
biburl = {https://dblp.org/rec/conf/setn/PotamiasKM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/snpd/GuoZRWYL04,
author = {Zheng Guo and
Tianwen Zhang and
Shaoqi Rao and
Qi Wang and
Hui Yu and
Xia Li},
title = {Classification of Cancer Types Based on Decision Tree Analysis of
Gene Function Expression Profiles},
booktitle = {4th {IEEE} International Workshop on Source Code Analysis and Manipulation
{(SCAM} 2004), 15-16 September 2004, Chicago, IL, {USA}},
pages = {167--173},
publisher = {{IEEE} Computer Society},
year = {2004},
timestamp = {Wed, 16 Oct 2019 14:14:55 +0200},
biburl = {https://dblp.org/rec/conf/snpd/GuoZRWYL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/de/Ernst2003,
author = {Jens Ernst},
title = {Similarity-based clustering algorithms for gene expression profiles},
school = {Technical University Munich},
year = {2003},
url = {https://d-nb.info/968682316},
timestamp = {Sat, 17 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/de/Ernst2003.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/it/DiCamillo03,
author = {Barbara Di Camillo},
title = {Modelling dynamic gene expression profiles},
school = {University of Padua, Italy},
year = {2003},
url = {https://opac.bncf.firenze.sbn.it/bncf-prod/resource?uri=BNI0007801},
timestamp = {Thu, 27 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/it/DiCamillo03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/artmed/PetersonR03,
author = {Carsten Peterson and
Markus Ringn{\'{e}}r},
title = {Analyzing tumor gene expression profiles},
journal = {Artif. Intell. Medicine},
volume = {28},
number = {1},
pages = {59--74},
year = {2003},
url = {https://doi.org/10.1016/S0933-3657(03)00035-6},
doi = {10.1016/S0933-3657(03)00035-6},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/artmed/PetersonR03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EichlerHI03,
author = {Gabriel S. Eichler and
Sui Huang and
Donald E. Ingber},
title = {Gene Expression Dynamics Inspector {(GEDI):} for integrative analysis
of expression profiles},
journal = {Bioinform.},
volume = {19},
number = {17},
pages = {2321--2322},
year = {2003},
url = {https://doi.org/10.1093/bioinformatics/btg307},
doi = {10.1093/BIOINFORMATICS/BTG307},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EichlerHI03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HvidstenLK03,
author = {Torgeir R. Hvidsten and
Astrid L{\ae}greid and
Henryk Jan Komorowski},
title = {Learning Rule-based Models of Biological Process from Gene Expression
Time Profiles Using Gene Ontology},
journal = {Bioinform.},
volume = {19},
number = {9},
pages = {1116--1123},
year = {2003},
url = {https://doi.org/10.1093/bioinformatics/btg047},
doi = {10.1093/BIOINFORMATICS/BTG047},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HvidstenLK03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiFX03,
author = {Li Wuju and
Ming Fan and
Momiao Xiong},
title = {SamCluster: An Integrated Scheme for Automatic Discovery of Sample
Classes Using Gene Expression Profile},
journal = {Bioinform.},
volume = {19},
number = {7},
pages = {811--817},
year = {2003},
url = {https://doi.org/10.1093/bioinformatics/btg095},
doi = {10.1093/BIOINFORMATICS/BTG095},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiFX03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiLDYW03,
author = {Jinyan Li and
Huiqing Liu and
James R. Downing and
Allen Eng{-}Juh Yeoh and
Limsoon Wong},
title = {Simple rules underlying gene expression profiles of more than six
subtypes of acute lymphoblastic leukemia {(ALL)} patients},
journal = {Bioinform.},
volume = {19},
number = {1},
pages = {71--78},
year = {2003},
url = {https://doi.org/10.1093/bioinformatics/19.1.71},
doi = {10.1093/BIOINFORMATICS/19.1.71},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiLDYW03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuM03,
author = {Xueli Liu and
Hans{-}Georg M{\"{u}}ller},
title = {Modes and clustering for time-warped gene expression profile data},
journal = {Bioinform.},
volume = {19},
number = {15},
pages = {1937--1944},
year = {2003},
url = {https://doi.org/10.1093/bioinformatics/btg257},
doi = {10.1093/BIOINFORMATICS/BTG257},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuM03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ObaSTMMI03,
author = {Shigeyuki Oba and
Masa{-}aki Sato and
Ichiro Takemasa and
Morito Monden and
Ken{-}ichi Matsubara and
Shin Ishii},
title = {A Bayesian missing value estimation method for gene expression profile
data},
journal = {Bioinform.},
volume = {19},
number = {16},
pages = {2088--2096},
year = {2003},
url = {https://doi.org/10.1093/bioinformatics/btg287},
doi = {10.1093/BIOINFORMATICS/BTG287},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ObaSTMMI03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmpb/Peterson03,
author = {Leif E. Peterson},
title = {Partitioning large-sample microarray-based gene expression profiles
using principal components analysis},
journal = {Comput. Methods Programs Biomed.},
volume = {70},
number = {2},
pages = {107--119},
year = {2003},
url = {https://doi.org/10.1016/S0169-2607(02)00009-3},
doi = {10.1016/S0169-2607(02)00009-3},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cmpb/Peterson03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijseke/ChoW03,
author = {Sung{-}Bae Cho and
Hong{-}Hee Won},
title = {Data Mining For Gene Expression Profiles From Dna Microarray},
journal = {Int. J. Softw. Eng. Knowl. Eng.},
volume = {13},
number = {6},
pages = {593--608},
year = {2003},
url = {https://doi.org/10.1142/S0218194003001469},
doi = {10.1142/S0218194003001469},
timestamp = {Wed, 22 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijseke/ChoW03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/RadmacherMS03,
author = {Michael D. Radmacher and
Lisa M. McShane and
Richard M. Simon},
title = {A Paradigm for Class Prediction Using Gene Expression Profiles},
journal = {J. Comput. Biol.},
volume = {9},
number = {3},
pages = {505--511},
year = {2003},
url = {https://doi.org/10.1089/106652702760138592},
doi = {10.1089/106652702760138592},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/RadmacherMS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jise/HuangC03a,
author = {Ing{-}Jer Huang and
Dao{-}Zhen Chen},
title = {Mining Correlations of Human Gene Expression from Digital Gene Expression
Profiles},
journal = {J. Inf. Sci. Eng.},
volume = {19},
number = {6},
pages = {909--921},
year = {2003},
url = {http://www.iis.sinica.edu.tw/page/jise/2003/200311\_01.html},
timestamp = {Fri, 16 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jise/HuangC03a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nn/RessomWN03,
author = {Habtom W. Ressom and
Dali Wang and
Padma Natarajan},
title = {Adaptive double self-organizing maps for clustering gene expression
profiles},
journal = {Neural Networks},
volume = {16},
number = {5-6},
pages = {633--640},
year = {2003},
url = {https://doi.org/10.1016/S0893-6080(03)00102-3},
doi = {10.1016/S0893-6080(03)00102-3},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nn/RessomWN03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cikm/TangZ03,
author = {Chun Tang and
Aidong Zhang},
title = {Mining multiple phenotype structures underlying gene expression profiles},
booktitle = {Proceedings of the 2003 {ACM} {CIKM} International Conference on Information
and Knowledge Management, New Orleans, Louisiana, USA, November 2-8,
2003},
pages = {418--425},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/956863.956942},
doi = {10.1145/956863.956942},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cikm/TangZ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/DuanLSD03,
author = {Zhong{-}Hui Duan and
Louis S. Liou and
Ting Shi and
Joseph A. DiDonato},
title = {Application of Singular Value Decomposition and Functional Clustering
to Analyzing Gene Expression Profiles of Renal Cell Carcinoma},
booktitle = {2nd {IEEE} Computer Society Bioinformatics Conference, {CSB} 2003,
Stanford, CA, USA, August 11-14, 2003},
pages = {392--393},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/CSB.2003.1227341},
doi = {10.1109/CSB.2003.1227341},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/DuanLSD03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/Syeda-Mahmood03,
author = {Tanveer Fathima Syeda{-}Mahmood},
title = {Clustering Time-Varying Gene Expression Profiles using Scale-space
Signals},
booktitle = {2nd {IEEE} Computer Society Bioinformatics Conference, {CSB} 2003,
Stanford, CA, USA, August 11-14, 2003},
pages = {48--56},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/CSB.2003.1227303},
doi = {10.1109/CSB.2003.1227303},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/Syeda-Mahmood03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kdd/YipCN03,
author = {Kevin Y. Yip and
David W. Cheung and
Michael K. Ng},
editor = {Mohammed Javeed Zaki and
Jason Tsong{-}Li Wang and
Hannu Toivonen},
title = {A highly-usable projected clustering algorithm for gene expression
profiles},
booktitle = {Proceedings of the 3nd {ACM} {SIGKDD} Workshop on Data Mining in Bioinformatics
{(BIOKDD} 2003), August 27th, 2003, Washington, DC, {USA}},
pages = {41--48},
year = {2003},
url = {http://www.cs.rpi.edu/\&\#126;zaki/BIOKDD03/proceedings/8-yip.pdf},
timestamp = {Wed, 03 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/kdd/YipCN03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/LiL03,
author = {Hongzhe Li and
Yihui Luan},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Kernel Cox Regression Models for Linking Gene Expression Profiles
to Censored Survival Data},
booktitle = {Proceedings of the 8th Pacific Symposium on Biocomputing, {PSB} 2003,
Lihue, Hawaii, USA, January 3-7, 2003},
pages = {65--76},
year = {2003},
url = {http://psb.stanford.edu/psb-online/proceedings/psb03/li.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/LiL03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Wu02,
author = {Thomas D. Wu},
title = {Large-scale analysis of gene expression profiles},
journal = {Briefings Bioinform.},
volume = {3},
number = {1},
pages = {7--17},
year = {2002},
url = {https://doi.org/10.1093/bib/3.1.7},
doi = {10.1093/BIB/3.1.7},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/Wu02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DodsonCSP02,
author = {J. M. Dodson and
P. T. Charles and
David A. Stenger and
Joseph J. Pancrazio},
title = {Quantitative assessment of filter-based cDNA microarrays: gene expression
profiles of human T-lymphoma cell lines},
journal = {Bioinform.},
volume = {18},
number = {7},
pages = {953--960},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.7.953},
doi = {10.1093/BIOINFORMATICS/18.7.953},
timestamp = {Thu, 09 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DodsonCSP02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiW02,
author = {Jinyan Li and
Limsoon Wong},
title = {Identifying good diagnostic gene groups from gene expression profiles
using the concept of emerging patterns},
journal = {Bioinform.},
volume = {18},
number = {5},
pages = {725--734},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.5.725},
doi = {10.1093/BIOINFORMATICS/18.5.725},
timestamp = {Fri, 16 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiW02a,
author = {Jinyan Li and
Limsoon Wong},
title = {Identifying good diagnostic gene groups from gene expression profiles
using the concept of emerging patterns},
journal = {Bioinform.},
volume = {18},
number = {10},
pages = {1406--1407},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.10.1406},
doi = {10.1093/BIOINFORMATICS/18.10.1406},
timestamp = {Tue, 06 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiW02a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MedvedovicS02,
author = {Mario Medvedovic and
Siva Sivaganesan},
title = {Bayesian infinite mixture model based clustering of gene expression
profiles},
journal = {Bioinform.},
volume = {18},
number = {9},
pages = {1194--1206},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.9.1194},
doi = {10.1093/BIOINFORMATICS/18.9.1194},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MedvedovicS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NguyenR02a,
author = {Danh V. Nguyen and
David M. Rocke},
title = {Multi-class cancer classification via partial least squares with gene
expression profiles},
journal = {Bioinform.},
volume = {18},
number = {9},
pages = {1216--1226},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.9.1216},
doi = {10.1093/BIOINFORMATICS/18.9.1216},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NguyenR02a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParkBK02,
author = {Peter J. Park and
Atul J. Butte and
Isaac S. Kohane},
title = {Comparing expression profiles of genes with similar promoter regions},
journal = {Bioinform.},
volume = {18},
number = {12},
pages = {1576--1584},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.12.1576},
doi = {10.1093/BIOINFORMATICS/18.12.1576},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ParkBK02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmetMMTMM02,
author = {Frank De Smet and
Janick Mathys and
Kathleen Marchal and
Gert Thijs and
Bart De Moor and
Yves Moreau},
title = {Adaptive quality-based clustering of gene expression profiles},
journal = {Bioinform.},
volume = {18},
number = {5},
pages = {735--746},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.5.735},
doi = {10.1093/BIOINFORMATICS/18.5.735},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SmetMMTMM02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WujuM02,
author = {Li Wuju and
Momiao Xiong},
title = {Tclass: tumor classification system based on gene expression profile},
journal = {Bioinform.},
volume = {18},
number = {2},
pages = {325--326},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.2.325},
doi = {10.1093/BIOINFORMATICS/18.2.325},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WujuM02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijprai/Cho02,
author = {Sung{-}Bae Cho},
title = {Exploring Features and Classifiers to Classify Gene Expression Profiles
of Acute Leukemia},
journal = {Int. J. Pattern Recognit. Artif. Intell.},
volume = {16},
number = {7},
pages = {831--844},
year = {2002},
url = {https://doi.org/10.1142/S0218001402002015},
doi = {10.1142/S0218001402002015},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijprai/Cho02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/SpangBZMNW02,
author = {Rainer Spang and
Carrie Blanchette and
Harry Zuzan and
Jeffrey R. Marks and
Joseph Nevins and
Mike West},
title = {Prediction and uncertainty in the analysis of gene expression profiles},
journal = {Silico Biol.},
volume = {2},
number = {3},
pages = {369--381},
year = {2002},
url = {http://content.iospress.com/articles/in-silico-biology/isb00056},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/SpangBZMNW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isci/WangG02,
author = {Yufeng Wang and
Xun Gu},
title = {Evolutionary and expression profiles of gene families crucial for
central nervous system development},
journal = {Inf. Sci.},
volume = {145},
number = {3-4},
pages = {215--223},
year = {2002},
url = {https://doi.org/10.1016/S0020-0255(02)00233-5},
doi = {10.1016/S0020-0255(02)00233-5},
timestamp = {Sat, 27 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isci/WangG02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/jcis/WangG02,
author = {Yufeng Wang and
Xun Gu},
editor = {H. John Caulfield and
Shu{-}Heng Chen and
Heng{-}Da Cheng and
Richard J. Duro and
Vasant G. Honavar and
Etienne E. Kerre and
Mi Lu and
Manuel Gra{\~{n}}a Romay and
Timothy K. Shih and
Dan Ventura and
Paul P. Wang and
Yuanyuan Yang},
title = {Evolutionary Analysis for Developmental Profiles of Gene Family Expression
in Central Nervous System},
booktitle = {Proceedings of the 6th Joint Conference on Information Science, March
8-13, 2002, Research Triangle Park, North Carolina, {USA}},
pages = {1231--1236},
publisher = {{JCIS} / Association for Intelligent Machinery, Inc.},
year = {2002},
timestamp = {Mon, 13 Nov 2017 18:15:11 +0100},
biburl = {https://dblp.org/rec/conf/jcis/WangG02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ppsn/MerzZ02,
author = {Peter Merz and
Andreas Zell},
editor = {Juan Juli{\'{a}}n Merelo Guerv{\'{o}}s and
Panagiotis Adamidis and
Hans{-}Georg Beyer and
Jos{\'{e}} Luis Fern{\'{a}}ndez{-}Villaca{\~{n}}as Mart{\'{\i}}n and
Hans{-}Paul Schwefel},
title = {Clustering Gene Expression Profiles with Memetic Algorithms},
booktitle = {Parallel Problem Solving from Nature - {PPSN} VII, 7th International
Conference, Granada, Spain, September 7-11, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2439},
pages = {811--820},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45712-7\_78},
doi = {10.1007/3-540-45712-7\_78},
timestamp = {Sun, 25 Jul 2021 11:46:24 +0200},
biburl = {https://dblp.org/rec/conf/ppsn/MerzZ02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Ding02,
author = {Chris H. Q. Ding},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Analysis of gene expression profiles: class discovery and leaf ordering},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {127--136},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565212},
doi = {10.1145/565196.565212},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Ding02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HorimotoT01,
author = {Katsuhisa Horimoto and
Hiroyuki Toh},
title = {Statistical estimation of cluster boundaries in gene expression profile
data},
journal = {Bioinform.},
volume = {17},
number = {12},
pages = {1143--1151},
year = {2001},
url = {https://doi.org/10.1093/bioinformatics/17.12.1143},
doi = {10.1093/BIOINFORMATICS/17.12.1143},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HorimotoT01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LukashinF01,
author = {Alexander V. Lukashin and
Rainer Fuchs},
title = {Analysis of temporal gene expression profiles: clustering by simulated
annealing and determining the optimal number of clusters},
journal = {Bioinform.},
volume = {17},
number = {5},
pages = {405--414},
year = {2001},
url = {https://doi.org/10.1093/bioinformatics/17.5.405},
doi = {10.1093/BIOINFORMATICS/17.5.405},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LukashinF01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/KuramochiK01,
author = {Michihiro Kuramochi and
George Karypis},
editor = {Nikolaos G. Bourbakis},
title = {Gene Classification using Expression Profiles: {A} Feasibility Study},
booktitle = {2nd {IEEE} International Symposium on Bioinformatics and Bioengineering,
Bethesda, Maryland, USA, November 4-5, 2001, Proceedings},
pages = {191--200},
publisher = {{IEEE} Computer Society},
year = {2001},
url = {https://doi.org/10.1109/BIBE.2001.974429},
doi = {10.1109/BIBE.2001.974429},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/KuramochiK01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/SpangBZMNW01,
author = {Rainer Spang and
Carrie Blanchette and
Harry Zuzan and
Jeffrey R. Marks and
Joseph Nevins and
Mike West},
editor = {Edgar Wingender},
title = {Prediction and uncertainty in the analysis of gene expression profiles},
booktitle = {Computer science and biology: Proceedings of the German Conference
on Bioinformatics, {GCB} 2001, October 7-10, 2001, Braunschweig, Germany},
pages = {102--111},
publisher = {German Research Center for Biotechnology},
year = {2001},
timestamp = {Tue, 15 Mar 2005 13:06:29 +0100},
biburl = {https://dblp.org/rec/conf/gcb/SpangBZMNW01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/ChiangBE01,
author = {Derek Y. Chiang and
Patrick O. Brown and
Michael B. Eisen},
title = {Visualizing associations between genome sequences and gene expression
data using genome-mean expression profiles},
booktitle = {Proceedings of the Ninth International Conference on Intelligent Systems
for Molecular Biology, July 21-25, 2001, Copenhagen, Denmark},
pages = {49--55},
year = {2001},
timestamp = {Thu, 20 Jun 2002 11:09:36 +0200},
biburl = {https://dblp.org/rec/conf/ismb/ChiangBE01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kdd/PavlidisTN01,
author = {Paul Pavlidis and
Christopher Tang and
William Stafford Noble},
editor = {Mohammed Javeed Zaki and
Hannu Toivonen and
Jason Tsong{-}Li Wang},
title = {Classification of genes using probabilistic models of microarray expression
profiles},
booktitle = {Proceedings of the {ACM} {SIGKDD} Workshop on Data Mining in Bioinformatics
{(BIOKDD} 2001)},
pages = {15--21},
year = {2001},
url = {http://www.cs.rpi.edu/\&\#126;zaki/BIOKDD01/pavlidis.ps.gz},
timestamp = {Fri, 23 Aug 2019 14:18:49 +0200},
biburl = {https://dblp.org/rec/conf/kdd/PavlidisTN01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Ben-DorBFNSY00,
author = {Amir Ben{-}Dor and
Laurakay Bruhn and
Nir Friedman and
Iftach Nachman and
Mich{\`{e}}l Schummer and
Zohar Yakhini},
title = {Tissue Classification with Gene Expression Profiles},
journal = {J. Comput. Biol.},
volume = {7},
number = {3-4},
pages = {559--583},
year = {2000},
url = {https://doi.org/10.1089/106652700750050943},
doi = {10.1089/106652700750050943},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/Ben-DorBFNSY00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Ben-DorBFNSY00,
author = {Amir Ben{-}Dor and
Laurakay Bruhn and
Nir Friedman and
Iftach Nachman and
Mich{\`{e}}l Schummer and
Zohar Yakhini},
editor = {Ron Shamir and
Satoru Miyano and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Tissue classification with gene expression profiles},
booktitle = {Proceedings of the Fourth Annual International Conference on Computational
Molecular Biology, {RECOMB} 2000, Tokyo, Japan, April 8-11, 2000},
pages = {54--64},
publisher = {{ACM}},
year = {2000},
url = {https://doi.org/10.1145/332306.332328},
doi = {10.1145/332306.332328},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/Ben-DorBFNSY00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/FellenbergM99,
author = {Matthias Fellenberg and
Hans{-}Werner Mewes},
title = {Interpreting Clusters of Gene Expression Profiles in Terms of Metabolic
Pathways},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 1999,
October 4-6, 1999, Hannover, Germany},
pages = {185--187},
year = {1999},
timestamp = {Fri, 02 Aug 2019 15:48:16 +0200},
biburl = {https://dblp.org/rec/conf/gcb/FellenbergM99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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