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export results for "gene-expression profile"
@article{DBLP:journals/bmcbi/VermaRM24, author = {Ghanshyam Verma and Dietrich Rebholz{-}Schuhmann and Michael G. Madden}, title = {Enabling personalised disease diagnosis by combining a patient's time-specific gene expression profile with a biomedical knowledge base}, journal = {{BMC} Bioinform.}, volume = {25}, number = {1}, pages = {62}, year = {2024} }
@article{DBLP:journals/cbm/HanKL24, author = {Jiyeon Han and Min Ji Kang and Sanghyuk Lee}, title = {{DRSPRING:} Graph convolutional network (GCN)-Based drug synergy prediction utilizing drug-induced gene expression profile}, journal = {Comput. Biol. Medicine}, volume = {174}, pages = {108436}, year = {2024} }
@article{DBLP:journals/cmpb/ZanfardinoFG24, author = {Mario Zanfardino and Monica Franzese and Filippo Geraci}, title = {DeClUt: Decluttering differentially expressed genes through clustering of their expression profiles}, journal = {Comput. Methods Programs Biomed.}, volume = {254}, pages = {108258}, year = {2024} }
@article{DBLP:journals/fbinf/LuoNJMPLYDQAJY24, author = {Xihaier Luo and Seyednami Niyakan and Patrick R. Johnstone and Sean McCorkle and Gilchan Park and Vanessa L{\'{o}}pez{-}Marrero and Shinjae Yoo and Edward R. Dougherty and Xiaoning Qian and Francis J. Alexander and Shantenu Jha and Byung{-}Jun Yoon}, title = {Pathway-based analyses of gene expression profiles at low doses of ionizing radiation}, journal = {Frontiers Bioinform.}, volume = {4}, year = {2024} }
@inproceedings{DBLP:conf/aaai/0027Y24, author = {Chen Li and Yoshihiro Yamanishi}, title = {GxVAEs: Two Joint VAEs Generate Hit Molecules from Gene Expression Profiles}, booktitle = {{AAAI}}, pages = {13455--13463}, publisher = {{AAAI} Press}, year = {2024} }
@inproceedings{DBLP:conf/bildmed/MonroyREOBVBM24, author = {Luis Carlos Rivera Monroy and Leonhard Rist and Martin Eberhardt and Christian Ostalecki and Andreas Bauer and Julio Vera and Katharina Breininger and Andreas K. Maier}, title = {Comparative Analysis of Radiomic Features and Gene Expression Profiles in Histopathology Data using Graph Neural Networks}, booktitle = {Bildverarbeitung f{\"{u}}r die Medizin}, series = {Informatik Aktuell}, pages = {160--165}, publisher = {Springer}, year = {2024} }
@article{DBLP:journals/aarc/MikhailovKSK23, author = {Alexei M. Mikhailov and Mikhail F. Karavai and Vladimir A. Sivtsov and Maria A. Kurnikova}, title = {Machine Learning for Diagnosis of Diseases with Complete Gene Expression Profile}, journal = {Autom. Remote. Control.}, volume = {84}, number = {7}, pages = {727--733}, year = {2023} }
@article{DBLP:journals/bib/SebastianRK23, author = {Softya Sebastian and Swarup Roy and Jugal Kalita}, title = {A generic parallel framework for inferring large-scale gene regulatory networks from expression profiles: application to Alzheimer's disease network}, journal = {Briefings Bioinform.}, volume = {24}, number = {1}, year = {2023} }
@article{DBLP:journals/bmcbi/ChenNLZL23, author = {Jiaxing Chen and Yen Kaow Ng and Lu Lin and Xianglilan Zhang and Shuaicheng Li}, title = {On triangle inequalities of correlation-based distances for gene expression profiles}, journal = {{BMC} Bioinform.}, volume = {24}, number = {1}, pages = {40}, year = {2023} }
@article{DBLP:journals/cbm/HossenIRKHTFKM23, author = {Md Bayazid Hossen and Md Ariful Islam and Md Selim Reza and Md Kaderi Kibria and Md Abu Horaira and Khanis Farhana Tuly and Md. Omar Faruqe and Firoz Kabir and Md. Nurul Haque Mollah}, title = {Robust identification of common genomic biomarkers from multiple gene expression profiles for the prognosis, diagnosis, and therapies of pancreatic cancer}, journal = {Comput. Biol. Medicine}, volume = {152}, pages = {106411}, year = {2023} }
@article{DBLP:journals/mbec/KishoreVPMJ23, author = {Akash Kishore and Lokeswari Venkataramana and D. Venkata Vara Prasad and Akshaya Mohan and Bhavya Jha}, title = {Enhancing the prediction of {IDC} breast cancer staging from gene expression profiles using hybrid feature selection methods and deep learning architecture}, journal = {Medical Biol. Eng. Comput.}, volume = {61}, number = {11}, pages = {2895--2919}, year = {2023} }
@article{DBLP:journals/ploscb/KasianovKMBLP23, author = {Artem S. Kasianov and Anna V. Klepikova and Alexey V. Mayorov and Gleb S. Buzanov and Maria D. Logacheva and Aleksey A. Penin}, title = {Interspecific comparison of gene expression profiles using machine learning}, journal = {PLoS Comput. Biol.}, volume = {19}, number = {1}, year = {2023} }
@article{DBLP:journals/tcbb/LiXLMLFZL23, author = {Aimin Li and Siqi Xiong and Junhuai Li and Saurav Mallik and Yajun Liu and Rong Fei and Hongfang Zhou and Guangming Liu}, title = {AngClust: Angle Feature-Based Clustering for Short Time Series Gene Expression Profiles}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1574--1580}, year = {2023} }
@inproceedings{DBLP:conf/bibm/YuZDG23, author = {Liang Yu and Huan Zhu and Da Dong and Lin Gao}, title = {Gene Expression Profile Prediction under Drug Action Based on Generative Adversarial Networks}, booktitle = {{BIBM}}, pages = {203--208}, publisher = {{IEEE}}, year = {2023} }
@inproceedings{DBLP:conf/daset/AbdullahY23, author = {Mohammad Nasir Abdullah and Bee Wah Yap}, title = {Evaluation of Machine Learning Models for Breast Cancer Detection in Microarray Gene Expression Profiles}, booktitle = {DaSET}, series = {Lecture Notes on Data Engineering and Communications Technologies}, volume = {191}, pages = {563--576}, publisher = {Springer}, year = {2023} }
@inproceedings{DBLP:conf/evoapps/RojasVelazquezTRKR13, author = {David Rojas{-}Velazquez and Alberto Tonda and Itzel Rodr{\'{\i}}guez{-}Guerra and Aletta D. Kraneveld and Alejandro Lopez Rincon}, title = {Multi-objective Evolutionary Discretization of Gene Expression Profiles: Application to {COVID-19} Severity Prediction}, booktitle = {EvoApplications@EvoStar}, series = {Lecture Notes in Computer Science}, volume = {13989}, pages = {703--717}, publisher = {Springer}, year = {2023} }
@article{DBLP:journals/corr/abs-2301-01769, author = {Xihaier Luo and Sean McCorkle and Gilchan Park and Vanessa L{\'{o}}pez{-}Marrero and Shinjae Yoo and Edward R. Dougherty and Xiaoning Qian and Francis J. Alexander and Byung{-}Jun Yoon}, title = {Comprehensive analysis of gene expression profiles to radiation exposure reveals molecular signatures of low-dose radiation response}, journal = {CoRR}, volume = {abs/2301.01769}, year = {2023} }
@article{DBLP:journals/corr/abs-2312-15825, author = {Luis Carlos Rivera Monroy and Leonhard Rist and Martin Eberhardt and Christian Ostalecki and Andreas Bauer and Julio Vera and Katharina Breininger and Andreas K. Maier}, title = {Comparative Analysis of Radiomic Features and Gene Expression Profiles in Histopathology Data Using Graph Neural Networks}, journal = {CoRR}, volume = {abs/2312.15825}, year = {2023} }
@article{DBLP:journals/bioinformatics/ChenLCZEZ22, author = {Zhong Chen and You Lu and Bo Cao and Wensheng Zhang and Andrea Edwards and Kun Zhang}, title = {Driver gene detection through Bayesian network integration of mutation and expression profiles}, journal = {Bioinform.}, volume = {38}, number = {10}, pages = {2781--2790}, year = {2022} }
@article{DBLP:journals/bmcbi/ChenNLZL22, author = {Jiaxing Chen and Yen Kaow Ng and Lu Lin and Xianglilan Zhang and Shuaicheng Li}, title = {Correction: On triangle inequalities of correlation-based distances for gene expression profiles}, journal = {{BMC} Bioinform.}, volume = {23-S}, number = {3}, pages = {571}, year = {2022} }
@article{DBLP:journals/entropy/MesaRodriguezGEV22, author = {Ania Mesa{-}Rodr{\'{\i}}guez and Augusto Gonzalez and Ernesto Estevez{-}Rams and Pedro A. Vald{\'{e}}s{-}Sosa}, title = {Cancer Segmentation by Entropic Analysis of Ordered Gene Expression Profiles}, journal = {Entropy}, volume = {24}, number = {12}, pages = {1744}, year = {2022} }
@article{DBLP:journals/gpb/ZhuZLOFYZ22, author = {Yi{-}Heng Zhu and Chengxin Zhang and Yan Liu and Gilbert S. Omenn and Peter L. Freddolino and Dong{-}Jun Yu and Yang Zhang}, title = {TripletGO: Integrating Transcript Expression Profiles with Protein Homology Inferences for Gene Function Prediction}, journal = {Genom. Proteom. Bioinform.}, volume = {20}, number = {5}, pages = {1013--1027}, year = {2022} }
@article{DBLP:journals/ijmssc/DeshmukhVG22, author = {Mandar Krishnarao Deshmukh and Vinod M. Vaze and Amit K. Gaikwad}, title = {Coyote-Wolf optimization-based deep neural network for cancer classification using gene expression profiles}, journal = {Int. J. Model. Simul. Sci. Comput.}, volume = {13}, number = {6}, pages = {2250058:1--2250058:27}, year = {2022} }
@article{DBLP:journals/nar/LiuYLJTDHH22, author = {Jinding Liu and Fei Yin and Kun Lang and Wencai Jie and Suxu Tan and Rongjing Duan and Shuiqing Huang and Wen Huang}, title = {MetazExp: a database for gene expression and alternative splicing profiles and their analyses based on 53 615 public RNA-seq samples in 72 metazoan species}, journal = {Nucleic Acids Res.}, volume = {50}, number = {{D1}}, pages = {1046--1054}, year = {2022} }
@article{DBLP:journals/nar/ZhangZZXCNZPJSL22, author = {Yuansheng Zhang and Dong Zou and Tongtong Zhu and Tianyi Xu and Ming Chen and Guangyi Niu and Wenting Zong and Rong Pan and Wei Jing and Jian Sang and Chang Liu and Yujia Xiong and Yubin Sun and Shuang Zhai and Huanxin Chen and Wenming Zhao and Jing{-}Fa Xiao and Yiming Bao and Lili Hao and Zhang Zhang}, title = {Gene Expression Nebulas {(GEN):} a comprehensive data portal integrating transcriptomic profiles across multiple species at both bulk and single-cell levels}, journal = {Nucleic Acids Res.}, volume = {50}, number = {{D1}}, pages = {1016--1024}, year = {2022} }
@article{DBLP:journals/nca/HanZLHLGC22, author = {Fei Han and Shaojun Zhu and Qinghua Ling and Henry Han and Hailong Li and Xinli Guo and Jiechuan Cao}, title = {Gene-CWGAN: a data enhancement method for gene expression profile based on improved {CWGAN-GP}}, journal = {Neural Comput. Appl.}, volume = {34}, number = {19}, pages = {16325--16339}, year = {2022} }
@article{DBLP:journals/tcbb/MajumderTPS22, author = {Subhasree Majumder and Yogita Thakran and Vipin Pal and Kuldeep Singh}, title = {Fuzzy and Rough Set Theory Based Computational Framework for Mining Genetic Interaction Triplets From Gene Expression Profiles for Lung Adenocarcinoma}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {19}, number = {6}, pages = {3469--3481}, year = {2022} }
@article{DBLP:journals/tcbb/SongPW22, author = {Junrong Song and Wei Peng and Feng Wang}, title = {Identifying Cancer Patient Subgroups by Finding Co-Modules From the Driver Mutation Profiles and Downstream Gene Expression Profiles}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {19}, number = {5}, pages = {2863--2872}, year = {2022} }
@inproceedings{DBLP:conf/bibm/LuoMPLYDQAY22, author = {Xihaier Luo and Sean McCorkle and Gilchan Park and Vanessa L{\'{o}}pez{-}Marrero and Shinjae Yoo and Edward R. Dougherty and Xiaoning Qian and Francis J. Alexander and Byung{-}Jun Yoon}, title = {Comprehensive analysis of gene expression profiles to radiation exposure reveals molecular signatures of low-dose radiation response}, booktitle = {{BIBM}}, pages = {2366--2374}, publisher = {{IEEE}}, year = {2022} }
@inproceedings{DBLP:conf/gecco/MouhrimTRKR22, author = {Nisrine Mouhrim and Alberto Tonda and Itzel Rodr{\'{\i}}guez{-}Guerra and Aletta D. Kraneveld and Alejandro Lopez Rincon}, title = {An evolutionary approach to the discretization of gene expression profiles to predict the severity of {COVID-19}}, booktitle = {{GECCO} Companion}, pages = {731--734}, publisher = {{ACM}}, year = {2022} }
@inproceedings{DBLP:conf/icimth/AuerAM022, author = {Florian Auer and Zhibek Abdykalykova and Dominik M{\"{u}}ller and Frank Kramer}, title = {Adaptation of {HL7} {FHIR} for the Exchange of Patients' Gene Expression Profiles}, booktitle = {{ICIMTH}}, series = {Studies in Health Technology and Informatics}, volume = {295}, pages = {332--335}, publisher = {{IOS} Press}, year = {2022} }
@inproceedings{DBLP:conf/isdmci/LiakhBDG22, author = {Igor Liakh and Sergii Babichev and Bohdan Durnyak and Iryna Gado}, title = {Formation of Subsets of Co-expressed Gene Expression Profiles Based on Joint Use of Fuzzy Inference System, Statistical Criteria and Shannon Entropy}, booktitle = {{ISDMCI}}, series = {Lecture Notes on Data Engineering and Communications Technologies}, volume = {149}, pages = {25--41}, publisher = {Springer}, year = {2022} }
@inproceedings{DBLP:conf/iwbbio/Bustos-AibarATA22, author = {Mireia Bustos{-}Aibar and Augusto Anguita{-}Ruiz and {\'{A}}lvaro Torres{-}Martos and Jes{\'{u}}s Alcal{\'{a}}{-}Fdez and Francisco Javier Ruiz{-}Ojeda and Marjorie Reyes{-}Farias and Andrea Soria{-}Gondek and Laura Herrero and David S{\'{a}}nchez{-}Infantes and Concepci{\'{o}}n Maria Aguilera}, title = {Gene Expression Profiles of Visceral and Subcutaneous Adipose Tissues in Children with Overweight or Obesity: The {KIDADIPOSEQ} Project}, booktitle = {{IWBBIO} {(1)}}, series = {Lecture Notes in Computer Science}, volume = {13346}, pages = {42--46}, publisher = {Springer}, year = {2022} }
@inproceedings{DBLP:conf/mie/AuerAM022, author = {Florian Auer and Zhibek Abdykalykova and Dominik M{\"{u}}ller and Frank Kramer}, title = {Implementation of Gene Expression Profiles in the {HL7} {FHIR} Standard}, booktitle = {{MIE}}, series = {Studies in Health Technology and Informatics}, volume = {294}, pages = {417--418}, publisher = {{IOS} Press}, year = {2022} }
@inproceedings{DBLP:conf/ricai/WuZ22, author = {Di Wu and Yafei Zhang}, title = {A Data Enhancement Method for Gene Expression Profile Based on Improved conditional {SN-GAN}}, booktitle = {{RICAI}}, pages = {1059--1064}, publisher = {{ACM}}, year = {2022} }
@inproceedings{DBLP:conf/scdm/AhmadKT22, author = {Farzana Kabir Ahmad and Siti Sakira Kamaruddin and Aysar Thamer Naser Tuaimah}, title = {Binary Bat Algorithm with Dynamic Bayesian Network for Feature Selection on Cancer Gene Expression Profiles}, booktitle = {{SCDM}}, series = {Lecture Notes in Networks and Systems}, volume = {457}, pages = {150--159}, publisher = {Springer}, year = {2022} }
@article{DBLP:journals/bib/HuLLZG21, author = {Fei{-}Fei Hu and Chun{-}Jie Liu and Lan{-}Lan Liu and Qiong Zhang and An{-}Yuan Guo}, title = {Expression profile of immune checkpoint genes and their roles in predicting immunotherapy response}, journal = {Briefings Bioinform.}, volume = {22}, number = {3}, year = {2021} }
@article{DBLP:journals/bib/WangLWFW21, author = {Xiaokang Wang and Jinfeng Liu and Danwen Wang and Maohui Feng and Xiongzhi Wu}, title = {Epigenetically regulated gene expression profiles reveal four molecular subtypes with prognostic and therapeutic implications in colorectal cancer}, journal = {Briefings Bioinform.}, volume = {22}, number = {4}, year = {2021} }
@article{DBLP:journals/bib/ZhangLLG21, author = {Qiong Zhang and Mei Luo and Chun{-}Jie Liu and An{-}Yuan Guo}, title = {{CCLA:} an accurate method and web server for cancer cell line authentication using gene expression profiles}, journal = {Briefings Bioinform.}, volume = {22}, number = {3}, year = {2021} }
@article{DBLP:journals/bmcbi/FukushimaSHH21, author = {Arika Fukushima and Masahiro Sugimoto and Satoru Hiwa and Tomoyuki Hiroyasu}, title = {Bayesian approach for predicting responses to therapy from high-dimensional time-course gene expression profiles}, journal = {{BMC} Bioinform.}, volume = {22}, number = {1}, pages = {132}, year = {2021} }
@article{DBLP:journals/bmcbi/GaoHLLXSZZ21, author = {Shengqiao Gao and Lu Han and Dan Luo and Gang Liu and Zhiyong Xiao and Guangcun Shan and Yongxiang Zhang and Wenxia Zhou}, title = {Modeling drug mechanism of action with large scale gene-expression profiles using GPAR, an artificial intelligence platform}, journal = {{BMC} Bioinform.}, volume = {22}, number = {1}, pages = {17}, year = {2021} }
@article{DBLP:journals/eswa/KochanTG21, author = {Necla Kochan and G. Yazgi T{\"{u}}t{\"{u}}nc{\"{u}} and G{\"{o}}knur Giner}, title = {A new local covariance matrix estimation for the classification of gene expression profiles in high dimensional RNA-Seq data}, journal = {Expert Syst. Appl.}, volume = {167}, pages = {114200}, year = {2021} }
@article{DBLP:journals/jbcb/NooriAA21, author = {Soheir Noori and Nabeel Al{-}A'Araji and Eman Al{-}Shamery}, title = {Identifying protein complexes from protein-protein interaction networks based on the gene expression profile and core-attachment approach}, journal = {J. Bioinform. Comput. Biol.}, volume = {19}, number = {3}, pages = {2150009:1--2150009:17}, year = {2021} }
@article{DBLP:journals/patterns/AneneKBM021, author = {Chinedu Anthony Anene and Faraz Khan and Findlay Bewicke{-}Copley and Eleni Maniati and Jun Wang}, title = {{ACSNI:} An unsupervised machine-learning tool for prediction of tissue-specific pathway components using gene expression profiles}, journal = {Patterns}, volume = {2}, number = {6}, pages = {100270}, year = {2021} }
@article{DBLP:journals/symmetry/BabichevYLD21, author = {Sergii Babichev and Lyudmyla Yasinska{-}Damri and Igor Liakh and Bohdan Durnyak}, title = {Comparison Analysis of Gene Expression Profiles Proximity Metrics}, journal = {Symmetry}, volume = {13}, number = {10}, pages = {1812}, year = {2021} }
@inproceedings{DBLP:conf/adma/Sazzed22, author = {Salim Sazzed}, title = {Feature Selection in Gene Expression Profile Employing Relevancy and Redundancy Measures and Binary Whale Optimization Algorithm {(BWOA)}}, booktitle = {{ADMA}}, series = {Lecture Notes in Computer Science}, volume = {13087}, pages = {45--60}, publisher = {Springer}, year = {2021} }
@inproceedings{DBLP:conf/ai/Sazzed21, author = {Salim Sazzed}, title = {{ANOVA-SRC-BPSO:} a hybrid filter and swarm optimization-based method for gene selection and cancer classification using gene expression profiles}, booktitle = {Canadian {AI}}, publisher = {Canadian Artificial Intelligence Association}, year = {2021} }
@inproceedings{DBLP:conf/bibm/LyuZYLLJBMB21, author = {Minjie Lyu and Yihan Zhang and Luning Yang and Xin Lin and Yilin Li and Huan Jin and Anthony Graham Bellotti and Nenad Mitic and Vladimir Brusic}, title = {{PBMC} Cell Classification from Single Cell mRNA Expression by Artificial Neural Networks, Profiles, Gene Markers, and Protein Markers}, booktitle = {{BIBM}}, pages = {3285--3290}, publisher = {{IEEE}}, year = {2021} }
@inproceedings{DBLP:conf/bibm/ZhaoHWFWGZNZ21, author = {Cecheng Zhao and Ziyang Huang and Hui Wang and Haitao Fu and Dong Wang and Yingjie Gao and Haotian Zhu and Xiaohui Niu and Wen Zhang}, title = {A robust drug representation learning model for eliminating cell specificity in gene expression profile and its application}, booktitle = {{BIBM}}, pages = {1191--1196}, publisher = {{IEEE}}, year = {2021} }
@inproceedings{DBLP:conf/iddm/Yasinska-DamriL21, author = {Lyudmyla Yasinska{-}Damri and Igor Liakh and Sergii Babichev and Bohdan Durnyak}, title = {Evaluation of the Gene Expression Profiles Complex Proximity Metric Effectiveness Based on a Hybrid Technique of Gene Expression Data Extraction}, booktitle = {{IDDM}}, series = {{CEUR} Workshop Proceedings}, volume = {3038}, pages = {150--160}, publisher = {CEUR-WS.org}, year = {2021} }
@inproceedings{DBLP:conf/ncaa/Zhu021, author = {Shaojun Zhu and Fei Han}, title = {A Data Enhancement Method for Gene Expression Profile Based on Improved {WGAN-GP}}, booktitle = {{NCAA}}, series = {Communications in Computer and Information Science}, volume = {1449}, pages = {242--254}, publisher = {Springer}, year = {2021} }
@article{DBLP:journals/bib/YangZXHZQXWF20, author = {Yadong Yang and Tao Zhang and Rudan Xiao and Xiaopeng Hao and Huiqiang Zhang and Hongzhu Qu and Bingbing Xie and Tao Wang and Xiangdong Fang}, title = {Platform-independent approach for cancer detection from gene expression profiles of peripheral blood cells}, journal = {Briefings Bioinform.}, volume = {21}, number = {3}, pages = {1006--1015}, year = {2020} }
@article{DBLP:journals/candc/Sut20, author = {Burcu Biterge S{\"{u}}t}, title = {Computational analysis of {TP53} vs. {CTNNB1} mutations in hepatocellular carcinoma suggests distinct cancer subtypes with differential gene expression profiles and chromatin states}, journal = {Comput. Biol. Chem.}, volume = {89}, pages = {107404}, year = {2020} }
@article{DBLP:journals/candc/ZhuZDHX20, author = {Naiqiang Zhu and Peng Zhang and Lilong Du and Jingyi Hou and Baoshan Xu}, title = {Identification of key genes and expression profiles in osteoarthritis by co-expressed network analysis}, journal = {Comput. Biol. Chem.}, volume = {85}, pages = {107225}, year = {2020} }
@article{DBLP:journals/gpb/WangCHSHYCSW20, author = {Jun Wang and Xiaowen Chen and Funan He and Xiao Song and Shu Huang and Wucheng Yue and Yipei Chen and Zhixi Su and Chenghui Wang}, title = {Global Analysis of Gene Expression Profiles Provides Novel Insights into the Development and Evolution of the Large Crustacean \emph{Eriocheir sinensis}}, journal = {Genom. Proteom. Bioinform.}, volume = {18}, number = {4}, pages = {443--454}, year = {2020} }
@article{DBLP:journals/ijbra/JuniorCL20, author = {Nivison Ruy Rocha Nery J{\'{u}}nior and Daniela Barreiro Claro and Janet C. Lindow}, title = {Similar gene expression profiles define leptospirosis clinical outcomes}, journal = {Int. J. Bioinform. Res. Appl.}, volume = {16}, number = {4}, pages = {373--386}, year = {2020} }
@article{DBLP:journals/jbcb/AiLLWG20, author = {Dongmei Ai and Gang Liu and Xiaoxin Li and Yuduo Wang and Man Guo}, title = {Calculation of immune cell proportion from batch tumor gene expression profile based on support vector regression}, journal = {J. Bioinform. Comput. Biol.}, volume = {18}, number = {5}, pages = {2050030:1--2050030:15}, year = {2020} }
@article{DBLP:journals/jbcb/LiXZLOW20, author = {Hong{-}Dong Li and Yunpei Xu and Xiaoshu Zhu and Quan Liu and Gilbert S. Omenn and Jianxin Wang}, title = {ClusterMine: {A} knowledge-integrated clustering approach based on expression profiles of gene sets}, journal = {J. Bioinform. Comput. Biol.}, volume = {18}, number = {3}, pages = {2040009:1--2040009:25}, year = {2020} }
@article{DBLP:journals/jbi/MomenzadehSR20, author = {Mohammadreza Momenzadeh and Mohammadreza Sehhati and Hossein Rabbani}, title = {Using hidden Markov model to predict recurrence of breast cancer based on sequential patterns in gene expression profiles}, journal = {J. Biomed. Informatics}, volume = {111}, pages = {103570}, year = {2020} }
@article{DBLP:journals/jcb/HuWWWYKD20, author = {Guozhang Hu and Rui Wang and Bo Wei and Le Wang and Qi Yang and Daliang Kong and Chao Du}, title = {Prognostic Markers Identification in Glioma by Gene Expression Profile Analysis}, journal = {J. Comput. Biol.}, volume = {27}, number = {1}, pages = {81--90}, year = {2020} }
@article{DBLP:journals/jcb/WangDZ20, author = {Ruike Wang and Xia Du and Yaqin Zhi}, title = {Screening of Critical Genes Involved in Metastasis and Prognosis of High-Grade Serous Ovarian Cancer by Gene Expression Profile Data}, journal = {J. Comput. Biol.}, volume = {27}, number = {7}, pages = {1104--1114}, year = {2020} }
@article{DBLP:journals/jcb/WangWCLX20, author = {Weiqing Wang and Shaohua Wang and Xiao Chu and Hui Liu and Ming Xiang}, title = {Predicting the Lung Squamous Cell Carcinoma Diagnosis and Prognosis Markers by Unique {DNA} Methylation and Gene Expression Profiles}, journal = {J. Comput. Biol.}, volume = {27}, number = {7}, pages = {1041--1054}, year = {2020} }
@article{DBLP:journals/nar/FengSLQGNWJLLCZ20, author = {Chenchen Feng and Chao Song and Yuejuan Liu and Fengcui Qian and Yu Gao and Ziyu Ning and Qiuyu Wang and Yong Jiang and Yanyu Li and Meng Li and Jiaxin Chen and Jian Zhang and Chunquan Li}, title = {KnockTF: a comprehensive human gene expression profile database with knockdown/knockout of transcription factors}, journal = {Nucleic Acids Res.}, volume = {48}, number = {Database-Issue}, pages = {D93--D100}, year = {2020} }
@article{DBLP:journals/sensors/YuanSH20, author = {Leiming Yuan and Yiye Sun and Guangzao Huang}, title = {Using Class-Specific Feature Selection for Cancer Detection with Gene Expression Profile Data of Platelets}, journal = {Sensors}, volume = {20}, number = {5}, pages = {1528}, year = {2020} }
@article{DBLP:journals/symmetry/AbdElNabiJETK20, author = {Mohamed Loey Ramadan AbdElNabi and Mohammed Wajeeh Jasim and Hazem M. El{-}Bakry and Mohamed Hamed N. Taha and Nour Eldeen Mahmoud Khalifa}, title = {Breast and Colon Cancer Classification from Gene Expression Profiles Using Data Mining Techniques}, journal = {Symmetry}, volume = {12}, number = {3}, pages = {408}, year = {2020} }
@article{DBLP:journals/tcbb/ChenMMZ20, author = {Haifen Chen and D. A. K. Maduranga and Piyushkumar A. Mundra and Jie Zheng}, title = {Bayesian Data Fusion of Gene Expression and Histone Modification Profiles for Inference of Gene Regulatory Network}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {17}, number = {2}, pages = {516--525}, year = {2020} }
@article{DBLP:journals/tcbb/ZhangXZ20, author = {Wei Zhang and Jia Xu and Xiufen Zou}, title = {Predicting Essential Proteins by Integrating Network Topology, Subcellular Localization Information, Gene Expression Profile and {GO} Annotation Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {17}, number = {6}, pages = {2053--2061}, year = {2020} }
@inproceedings{DBLP:conf/bibm/ZhangYB20, author = {Yihan Zhang and Luning Yang and Vladimir Brusic}, title = {Automation of Gene Expression Profile Analysis in Single Cell Data}, booktitle = {{BIBM}}, pages = {1329--1334}, publisher = {{IEEE}}, year = {2020} }
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@article{DBLP:journals/bmcbi/LenchikCKG14, author = {Nataliya I. Lenchik and Hao Chen and Dorothy N. Kakoola and Ivan Gerling}, title = {Differences in gene expression profiles between individual islets from case {\#}6213}, journal = {{BMC} Bioinform.}, volume = {15}, number = {{S-10}}, pages = {P18}, year = {2014} }
@article{DBLP:journals/bmcbi/RajK14, author = {Vinay Raj and Susan Kadlubar}, title = {Identification of gene expression profiles associated with prognostic groups of patients with Merkel cell carcinoma}, journal = {{BMC} Bioinform.}, volume = {15}, number = {{S-10}}, pages = {P20}, year = {2014} }
@article{DBLP:journals/bmcsb/PatilN14, author = {Ashwini Patil and Kenta Nakai}, title = {TimeXNet: Identifying active gene sub-networks using time-course gene expression profiles}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-4}}, pages = {S2}, year = {2014} }
@article{DBLP:journals/cmmm/LiuCKHCH14, author = {Li{-}Yu Daisy Liu and Li{-}Yun Chang and Wen{-}Hung Kuo and Hsiao{-}Lin Hwa and King{-}Jen Chang and Fon{-}Jou Hsieh}, title = {A Supervised Network Analysis on Gene Expression Profiles of Breast Tumors Predicts a 41-Gene Prognostic Signature of the Transcription Factor \emph{MYB} across Molecular Subtypes}, journal = {Comput. Math. Methods Medicine}, volume = {2014}, pages = {813067:1--813067:19}, year = {2014} }
@article{DBLP:journals/csda/CoffeyHH14, author = {Norma Bargary and John Hinde and E. Holian}, title = {Clustering longitudinal profiles using P-splines and mixed effects models applied to time-course gene expression data}, journal = {Comput. Stat. Data Anal.}, volume = {71}, pages = {14--29}, year = {2014} }
@article{DBLP:journals/ijon/FanCSW14, author = {Weiwei Fan and Bolin Chen and Gopalan Selvaraj and Fang{-}Xiang Wu}, title = {Discovering biological patterns from short time-series gene expression profiles with integrating {PPI} data}, journal = {Neurocomputing}, volume = {145}, pages = {3--13}, year = {2014} }
@article{DBLP:journals/nar/DittmarMMGV14, author = {W. James Dittmar and Lauren McIver and Pawel Michalak and Harold R. Garner and Gregorio Valdez}, title = {EvoCor: a platform for predicting functionally related genes using phylogenetic and expression profiles}, journal = {Nucleic Acids Res.}, volume = {42}, number = {Webserver-Issue}, pages = {72--75}, year = {2014} }
@article{DBLP:journals/tcbb/YuCYWLLH14, author = {Zhiwen Yu and Hongsheng Chen and Jane You and Hau{-}San Wong and Jiming Liu and Le Li and Guoqiang Han}, title = {Double Selection Based Semi-Supervised Clustering Ensemble for Tumor Clustering from Gene Expression Profiles}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {11}, number = {4}, pages = {727--740}, year = {2014} }
@inproceedings{DBLP:conf/bibm/KimWZ14, author = {Chang Sik Kim and Qing Wen and Shu{-}Dong Zhang}, title = {Integrative analysis of chemo-transcriptomic profiles for drug-feature specific gene expression signatures}, booktitle = {{BIBM}}, pages = {113--118}, publisher = {{IEEE} Computer Society}, year = {2014} }
@inproceedings{DBLP:conf/icpr/LiYLYWH14, author = {Le Li and Zhiwen Yu and Jiming Liu and Jane You and Hau{-}San Wong and Guoqiang Han}, title = {Multi-view Based AdaBoost Classifier Ensemble for Class Prediction from Gene Expression Profiles}, booktitle = {{ICPR}}, pages = {178--183}, publisher = {{IEEE} Computer Society}, year = {2014} }
@phdthesis{DBLP:phd/ca/Quon13, author = {Gerald T. Quon}, title = {Probabilistic Models for the Analysis of Gene Expression Profiles}, school = {University of Toronto, Canada}, year = {2013} }
@article{DBLP:journals/bioinformatics/ChenSZ13, author = {Xiaowei Chen and Frank J. Slack and Hongyu Zhao}, title = {Joint analysis of expression profiles from multiple cancers improves the identification of microRNA-gene interactions}, journal = {Bioinform.}, volume = {29}, number = {17}, pages = {2137--2145}, year = {2013} }
@article{DBLP:journals/bioinformatics/LaguninIRFP13, author = {Alexey Lagunin and Sergey Ivanov and Anastasia V. Rudik and Dmitry Filimonov and Vladimir Poroikov}, title = {DIGEP-Pred: web service for \emph{in silico} prediction of drug-induced gene expression profiles based on structural formula}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {2062--2063}, year = {2013} }
@article{DBLP:journals/bioinformatics/LeeKZT13, author = {Young{-}Suk Lee and Arjun Krishnan and Qian Zhu and Olga G. Troyanskaya}, title = {Ontology-aware classification of tissue and cell-type signals in gene expression profiles across platforms and technologies}, journal = {Bioinform.}, volume = {29}, number = {23}, pages = {3036--3044}, year = {2013} }
@article{DBLP:journals/bmcbi/KimOK13, author = {Jaehee Kim and Robert Todd Ogden and Haseong Kim}, title = {A method to identify differential expression profiles of time-course gene data with Fourier transformation}, journal = {{BMC} Bioinform.}, volume = {14}, pages = {310}, year = {2013} }
@article{DBLP:journals/bmcbi/ZhongWPCL13, author = {Yi Zhong and Ying{-}Wooi Wan and Kaifang Pang and Lionel M. L. Chow and Zhandong Liu}, title = {Digital sorting of complex tissues for cell type-specific gene expression profiles}, journal = {{BMC} Bioinform.}, volume = {14}, pages = {89}, year = {2013} }
@article{DBLP:journals/cbm/Garcia-GomezGEFS13, author = {Juan Miguel Garc{\'{\i}}a{-}G{\'{o}}mez and Juan G{\'{o}}mez{-}Sanch{\'{\i}}s and Pablo Escandell{-}Montero and Elies Fuster{-}Garc{\'{\i}}a and Emilio Soria{-}Olivas}, title = {Sparse Manifold Clustering and Embedding to discriminate gene expression profiles of glioblastoma and meningioma tumors}, journal = {Comput. Biol. Medicine}, volume = {43}, number = {11}, pages = {1863--1869}, year = {2013} }
@article{DBLP:journals/cmpb/SunL13, author = {Xiaoyong Sun and Jun Li}, title = {pairheatmap: Comparing expression profiles of gene groups in heatmaps}, journal = {Comput. Methods Programs Biomed.}, volume = {112}, number = {3}, pages = {599--606}, year = {2013} }
@article{DBLP:journals/ijdmb/BaskaranKK13, author = {N. Baskaran and Chee Keong Kwoh and Kam M. Hui}, title = {Comprehensive detection of cancer gene expression profiles and gene networks are impacted by the choice of pre-processing algorithm and gene-selection method}, journal = {Int. J. Data Min. Bioinform.}, volume = {7}, number = {4}, pages = {416--435}, year = {2013} }
@article{DBLP:journals/nar/PizarroHLH13, author = {Angel D. Pizarro and Katharina Hayer and Nicholas F. Lahens and John B. Hogenesch}, title = {CircaDB: a database of mammalian circadian gene expression profiles}, journal = {Nucleic Acids Res.}, volume = {41}, number = {Database-Issue}, pages = {1009--1013}, year = {2013} }
@article{DBLP:journals/ploscb/ChengUGW13, author = {Chao Cheng and Matthew Ung and Gavin D. Grant and Michael L. Whitfield}, title = {Transcription Factor Binding Profiles Reveal Cyclic Expression of Human Protein-coding Genes and Non-coding RNAs}, journal = {PLoS Comput. Biol.}, volume = {9}, number = {7}, year = {2013} }
@inproceedings{DBLP:conf/bibm/LiCWWP13, author = {Min Li and Weijie Chen and Jianxin Wang and Fang{-}Xiang Wu and Yi Pan}, title = {Identifying dynamic protein complexes based on gene expression profiles and {PPI} networks}, booktitle = {{BIBM}}, pages = {5}, publisher = {{IEEE} Computer Society}, year = {2013} }
@inproceedings{DBLP:conf/daeng/AlshamlanBA13, author = {Hala M. Alshamlan and Ghada Badr and Yousef A. Alohali}, title = {A Comparative Study of Cancer Classification Methods Using Microarray Gene Expression Profile}, booktitle = {DaEng}, series = {Lecture Notes in Electrical Engineering}, volume = {285}, pages = {389--398}, publisher = {Springer}, year = {2013} }
@inproceedings{DBLP:conf/fuzzIEEE/HuangCCYS13, author = {Sheng{-}Yao Huang and Yi{-}Cheng Chen and I{-}Fang Chung and Feng{-}Yi Yang and Chun{-}Hung Su}, title = {Finding marker genes from high dimensional expression profiles: Divide-and-conquer exploiting a fuzzy rule based framework}, booktitle = {{FUZZ-IEEE}}, pages = {1--6}, publisher = {{IEEE}}, year = {2013} }
@inproceedings{DBLP:conf/icmla/Hang13, author = {X. Hang}, title = {Gene Expression Profile Classification Using Random Projection and Sparse Representation}, booktitle = {{ICMLA} {(2)}}, pages = {411--414}, publisher = {{IEEE}}, year = {2013} }
@inproceedings{DBLP:conf/iconip/YunGNS13, author = {Jiang Yun and Xie Guocheng and Chen Na and Chen Shan}, title = {A New Gene Expression Profiles Classifying Approach Based on Neighborhood Rough Set and Probabilistic Neural Networks Ensemble}, booktitle = {{ICONIP} {(2)}}, series = {Lecture Notes in Computer Science}, volume = {8227}, pages = {484--489}, publisher = {Springer}, year = {2013} }
@inproceedings{DBLP:conf/iwann/Aguiar-PulidoSRED13, author = {Vanessa Aguiar{-}Pulido and Victoria Su{\'{a}}rez{-}Ulloa and Daniel Rivero and Jos{\'{e}} M. Eir{\'{\i}}n{-}L{\'{o}}pez and Juli{\'{a}}n Dorado}, title = {Clustering of Gene Expression Profiles Applied to Marine Research}, booktitle = {{IWANN} {(1)}}, series = {Lecture Notes in Computer Science}, volume = {7902}, pages = {453--462}, publisher = {Springer}, year = {2013} }
@article{DBLP:journals/corr/abs-1305-5750, author = {Khalid Raza and Rajni Jaiswal}, title = {Reconstruction and Analysis of Cancer-specific Gene Regulatory Networks from Gene Expression Profiles}, journal = {CoRR}, volume = {abs/1305.5750}, year = {2013} }
@article{DBLP:journals/bib/HuangSL12, author = {Norman Huang and Parantu K. Shah and Cheng Li}, title = {Lessons from a decade of integrating cancer copy number alterations with gene expression profiles}, journal = {Briefings Bioinform.}, volume = {13}, number = {3}, pages = {305--316}, year = {2012} }
@article{DBLP:journals/bmcbi/BravoPMIL12, author = {H{\'{e}}ctor Corrada Bravo and Vasyl Pihur and Matthew N. McCall and Rafael A. Irizarry and Jeffrey T. Leek}, title = {Gene expression anti-profiles as a basis for accurate universal cancer signatures}, journal = {{BMC} Bioinform.}, volume = {13}, pages = {272}, year = {2012} }
@article{DBLP:journals/bmcbi/WangNM12, author = {Kui Wang and Shu{-}Kay Ng and Geoffrey J. McLachlan}, title = {Clustering of time-course gene expression profiles using normal mixture models with autoregressive random effects}, journal = {{BMC} Bioinform.}, volume = {13}, pages = {300}, year = {2012} }
@article{DBLP:journals/jcb/LaviDS12, author = {Ofer Lavi and Gideon Dror and Ron Shamir}, title = {Network-Induced Classification Kernels for Gene Expression Profile Analysis}, journal = {J. Comput. Biol.}, volume = {19}, number = {6}, pages = {694--709}, year = {2012} }
@article{DBLP:journals/tcbb/BelcastroGSSDOB12, author = {Vincenzo Belcastro and Francesco Gregoretti and Velia Siciliano and Michele Santoro and Giovanni D'Angelo and Gennaro Oliva and Diego di Bernardo}, title = {Reverse Engineering and Analysis of Genome-Wide Gene Regulatory Networks from Gene Expression Profiles Using High-Performance Computing}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {9}, number = {3}, pages = {668--678}, year = {2012} }
@article{DBLP:journals/tcbb/YuLYWH12, author = {Zhiwen Yu and Le Li and Jane You and Hau{-}San Wong and Guoqiang Han}, title = {SC{\({^3}\)}: Triple Spectral Clustering-Based Consensus Clustering Framework for Class Discovery from Cancer Gene Expression Profiles}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {9}, number = {6}, pages = {1751--1765}, year = {2012} }
@article{DBLP:journals/tsmc/MitraG12, author = {Sushmita Mitra and Sampreeti Ghosh}, title = {Feature Selection and Clustering of Gene Expression Profiles Using Biological Knowledge}, journal = {{IEEE} Trans. Syst. Man Cybern. Part {C}}, volume = {42}, number = {6}, pages = {1590--1599}, year = {2012} }
@inproceedings{DBLP:conf/bibm/Balov12, author = {Nikolay Balov}, title = {A discrete Bayesian network framework for discrimination of gene expression profiles}, booktitle = {{BIBM}}, pages = {1--7}, publisher = {{IEEE} Computer Society}, year = {2012} }
@inproceedings{DBLP:conf/bibm/KimB12, author = {Hyunsoo Kim and Markus Bredel}, title = {Predicting survial by cancer pathway gene expression profiles in the {TCGA}}, booktitle = {{BIBM} Workshops}, pages = {872--875}, publisher = {{IEEE} Computer Society}, year = {2012} }
@inproceedings{DBLP:conf/bibm/LiYWN12, author = {Xutao Li and Yunming Ye and Qingyao Wu and Michael K. Ng}, title = {MultiFacTV: Finding modules from higher-order gene expression profiles with time dimension}, booktitle = {{BIBM}}, pages = {1--6}, publisher = {{IEEE} Computer Society}, year = {2012} }
@inproceedings{DBLP:conf/icmla/WangOZL12, author = {Dingding Wang and Mitsunori Ogihara and Erliang Zeng and Tao Li}, title = {Combining Gene Expression Profiles and Protein-Protein Interactions for Identifying Functional Modules}, booktitle = {{ICMLA} {(1)}}, pages = {114--119}, publisher = {{IEEE}}, year = {2012} }
@inproceedings{DBLP:conf/ieaaie/YuCYLH12, author = {Zhiwen Yu and Hantao Chen and Jane You and Le Li and Guoqiang Han}, title = {{SOM} 2 {CE:} Double Self-Organizing Map Based Cluster Ensemble Framework and its Application in Cancer Gene Expression Profiles}, booktitle = {{IEA/AIE}}, series = {Lecture Notes in Computer Science}, volume = {7345}, pages = {351--360}, publisher = {Springer}, year = {2012} }
@inproceedings{DBLP:conf/wob/JaskowiakCC12, author = {Pablo A. Jaskowiak and Ricardo J. G. B. Campello and Ivan G. Costa}, title = {Evaluating Correlation Coefficients for Clustering Gene Expression Profiles of Cancer}, booktitle = {{BSB}}, series = {Lecture Notes in Computer Science}, volume = {7409}, pages = {120--131}, publisher = {Springer}, year = {2012} }
@phdthesis{DBLP:phd/basesearch/Wu11b, author = {Di Wu}, title = {Finding hidden relationships between gene expression profiles with application to breast cancer biology}, school = {University of Melbourne, Australia}, year = {2011} }
@article{DBLP:journals/biodatamining/KilpinenOK11, author = {Sami Kilpinen and Kalle A. Ojala and Olli{-}P. Kallioniemi}, title = {Alignment of gene expression profiles from test samples against a reference database: New method for context-specific interpretation of microarray data}, journal = {BioData Min.}, volume = {4}, pages = {5}, year = {2011} }
@article{DBLP:journals/bioinformatics/OhKBT11, author = {Sunghee Oh and Dongwan D. Kang and Guy N. Brock and George C. Tseng}, title = {Biological impact of missing-value imputation on downstream analyses of gene expression profiles}, journal = {Bioinform.}, volume = {27}, number = {1}, pages = {78--86}, year = {2011} }
@article{DBLP:journals/bioinformatics/SeifertSSG11, author = {Michael Seifert and Marc Strickert and Alexander Schliep and Ivo Grosse}, title = {Exploiting prior knowledge and gene distances in the analysis of tumor expression profiles with extended Hidden Markov Models}, journal = {Bioinform.}, volume = {27}, number = {12}, pages = {1645--1652}, year = {2011} }
@article{DBLP:journals/bioinformatics/SilvaWDBMM11, author = {A. Sofia Silva and Shona H. Wood and Sipko van Dam and Sven Berres and Anne McArdle and Jo{\~{a}}o Pedro de Magalh{\~{a}}es}, title = {Gathering insights on disease etiology from gene expression profiles of healthy tissues}, journal = {Bioinform.}, volume = {27}, number = {23}, pages = {3300--3305}, year = {2011} }
@article{DBLP:journals/bmcbi/BensoCPSH11, author = {Alfredo Benso and Stefano Di Carlo and Gianfranco Politano and Alessandro Savino and Hafeez Hafeezurrehman}, title = {Building gene expression profile classifiers with a simple and efficient rejection option in {R}}, journal = {{BMC} Bioinform.}, volume = {12}, number = {{S-13}}, pages = {S3}, year = {2011} }
@article{DBLP:journals/bmcbi/ZhangZ11a, author = {Zhihua Zhang and Michael Q. Zhang}, title = {Histone modification profiles are predictive for tissue/cell-type specific expression of both protein-coding and microRNA genes}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {155}, year = {2011} }
@article{DBLP:journals/bmcsb/ZhangJCGW11, author = {Luwen Zhang and Xiangchun Ju and Yumin Cheng and Xiuyun Guo and Tieqiao Wen}, title = {Identifying Tmem59 related gene regulatory network of mouse neural stem cell from a compendium of expression profiles}, journal = {{BMC} Syst. Biol.}, volume = {5}, pages = {152}, year = {2011} }
@article{DBLP:journals/eswa/ZainuddinO11, author = {Zarita Zainuddin and Pauline Ong}, title = {Reliable multiclass cancer classification of microarray gene expression profiles using an improved wavelet neural network}, journal = {Expert Syst. Appl.}, volume = {38}, number = {11}, pages = {13711--13722}, year = {2011} }
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@article{DBLP:journals/jclinbioinf/BhattacharyaTSDSBSRM11, author = {Soumyaroop Bhattacharya and Shivraj Tyagi and Sorachai Srisuma and Dawn L. DeMeo and Steven Shapiro and Raphael Bueno and Edwin K. Silverman and John J. Reilly and Thomas J. Mariani}, title = {Peripheral blood gene expression profiles in {COPD} subjects}, journal = {J. Clin. Bioinform.}, volume = {1}, pages = {12}, year = {2011} }
@inproceedings{DBLP:conf/bibm/HsiaoCSHCH11, author = {Tzu{-}Hung Hsiao and Hung{-}I Harry Chen and Patricia C. Sanchez{-}Diaz and Jaclyn Y. Hung and Yidong Chen and Yufei Huang}, title = {Gene sets enrichment analysis of miRNA expression profile}, booktitle = {{BIBM} Workshops}, pages = {449--454}, publisher = {{IEEE} Computer Society}, year = {2011} }
@inproceedings{DBLP:conf/bmei/WangWDZ11, author = {Chun{-}E. Wang and Rui{-}Kai Wang and Jin{-}Ying Dai and Tuan{-}Jie Zhao}, title = {Phylogeny and expression profile analyses of oleate- and linoleate-desaturase genes in soybean}, booktitle = {{BMEI}}, pages = {1584--1587}, publisher = {{IEEE}}, year = {2011} }
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@inproceedings{DBLP:conf/icic/WangLW11, author = {Shu{-}Lin Wang and Min Li and Hongqiang Wang}, title = {Using 2D Principal Component Analysis to Reduce Dimensionality of Gene Expression Profiles for Tumor Classification}, booktitle = {{ICIC} {(3)}}, series = {Lecture Notes in Computer Science}, volume = {6840}, pages = {588--595}, publisher = {Springer}, year = {2011} }
@inproceedings{DBLP:conf/recomb/PratFLL11, author = {Yosef Prat and Menachem Fromer and Michal Linial and Nathan Linial}, title = {Geometric Interpretation of Gene Expression by Sparse Reconstruction of Transcript Profiles}, booktitle = {{RECOMB}}, series = {Lecture Notes in Computer Science}, volume = {6577}, pages = {355--357}, publisher = {Springer}, year = {2011} }
@inproceedings{DBLP:conf/shapes/LachapelleB11, author = {Aitana Morton de Lachapelle and Sven Bergmann}, title = {A New Scaling Measure Quantifies the Conservation of Proportions of Gene Expression Profiles in Developing Organic Shapes}, booktitle = {{SHAPES}}, series = {{CEUR} Workshop Proceedings}, volume = {812}, publisher = {CEUR-WS.org}, year = {2011} }
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@article{DBLP:journals/bioinformatics/NiidaIYNFSM10, author = {Atsushi Niida and Seiya Imoto and Rui Yamaguchi and Masao Nagasaki and Andr{\'{e}} Fujita and Teppei Shimamura and Satoru Miyano}, title = {Model-free unsupervised gene set screening based on information enrichment in expression profiles}, journal = {Bioinform.}, volume = {26}, number = {24}, pages = {3090--3097}, year = {2010} }
@article{DBLP:journals/bioinformatics/SubhaniRNB10, author = {Numanul Subhani and Luis Rueda and Alioune Ngom and Conrad J. Burden}, title = {Multiple gene expression profile alignment for microarray time-series data clustering}, journal = {Bioinform.}, volume = {26}, number = {18}, pages = {2281--2288}, year = {2010} }
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@article{DBLP:journals/gpb/ReverterVS10, author = {Ferran Reverter and Esteban Vegas and Pedro S{\'{a}}nchez}, title = {Mining Gene Expression Profiles: An Integrated Implementation of Kernel Principal Component Analysis and Singular Value Decomposition}, journal = {Genom. Proteom. Bioinform.}, volume = {8}, number = {3}, pages = {200--210}, year = {2010} }
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@article{DBLP:journals/jib/MulderKB10, author = {Wim De Mulder and Martin Kuiper and Ren{\'{e}} K. Boel}, title = {Clustering of gene expression profiles: creating initialization-independent clusterings by eliminating unstable genes}, journal = {J. Integr. Bioinform.}, volume = {7}, number = {3}, year = {2010} }
@article{DBLP:journals/jmma/FersiniMAM10, author = {Elisabetta Fersini and Enza Messina and Francesco Archetti and Cristina E. Manfredotti}, title = {Combining Gene Expression Profiles and Drug Activity Patterns Analysis: {A} Relational Clustering Approach}, journal = {J. Math. Model. Algorithms}, volume = {9}, number = {3}, pages = {275--289}, year = {2010} }
@article{DBLP:journals/titb/JingNL10, author = {Liping Jing and Michael K. Ng and Ying Liu}, title = {Construction of gene networks with hybrid approach from expression profile and gene ontology}, journal = {{IEEE} Trans. Inf. Technol. Biomed.}, volume = {14}, number = {1}, pages = {107--118}, year = {2010} }
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@inproceedings{DBLP:conf/bcb/AnSXMO10, author = {Li An and Desmond J. Smith and Hongbo M. Xie and Vasileios Megalooikonomou and Zoran Obradovic}, title = {Identifying gene functions using functional expression profiles obtained by voxelation}, booktitle = {{BCB}}, pages = {188--197}, publisher = {{ACM}}, year = {2010} }
@inproceedings{DBLP:conf/bibm/LuLHCTC10, author = {Tzu{-}Pin Lu and Liang{-}Chuan Lai and Chuhsing Kate Hsiao and Pei{-}Chun Chen and Mong{-}Hsun Tsai and Eric Y. Chuang}, title = {Concurrent analysis of copy number variations and expression profiles to identify genes associated with tumorigenesis and survival outcome in lung adenocarcinoma}, booktitle = {{BIBM}}, pages = {284--289}, publisher = {{IEEE} Computer Society}, year = {2010} }
@inproceedings{DBLP:conf/bionetics/LicameleG10, author = {Louis Licamele and Lise Getoor}, title = {A Method for the Detection of Meaningful and Reproducible Group Signatures from Gene Expression Profiles}, booktitle = {{BIONETICS}}, series = {Lecture Notes of the Institute for Computer Sciences, Social Informatics and Telecommunications Engineering}, volume = {87}, pages = {387--401}, publisher = {Springer}, year = {2010} }
@inproceedings{DBLP:conf/biostec/NgW10, author = {Ka{-}Lok Ng and Chia{-}Wei Weng}, title = {In Silico Study of Expression Profiles Correlation between MicroRNAs and Cancerous Genes}, booktitle = {{BIOINFORMATICS}}, pages = {141--146}, publisher = {{INSTICC} Press}, year = {2010} }
@inproceedings{DBLP:conf/icmlc/TangY10, author = {Tsz{-}Yan Tang and Hong Yan}, title = {Identifying periodicity of microarray gene expression profiles by autoregressive modeling and spectral estimation}, booktitle = {{ICMLC}}, pages = {3062--3066}, publisher = {{IEEE}}, year = {2010} }
@inproceedings{DBLP:conf/ieaaie/UrdaSFJ10, author = {Daniel Urda and Jos{\'{e}} Luis Subirats and Leonardo Franco and Jos{\'{e}} Manuel Jerez}, title = {Constructive Neural Networks to Predict Breast Cancer Outcome by Using Gene Expression Profiles}, booktitle = {{IEA/AIE} {(1)}}, series = {Lecture Notes in Computer Science}, volume = {6096}, pages = {317--326}, publisher = {Springer}, year = {2010} }
@inproceedings{DBLP:conf/isnn/ZhangLY10, author = {Weifeng Zhang and Chao{-}Chun Liu and Hong Yan}, title = {Temporal Gene Expression Profiles Reconstruction by Support Vector Regression and Framelet Kernel}, booktitle = {{ISNN} {(2)}}, series = {Lecture Notes in Computer Science}, volume = {6064}, pages = {68--74}, publisher = {Springer}, year = {2010} }
@inproceedings{DBLP:conf/medinfo/KanterakisoZKST10, author = {Alexandros Kanterakis and Giorgos otamias and Giorgos Zacharioudakis and Lefteris Koumakis and Stelios Sfakianakis and Manolis Tsiknakis}, title = {Scientific discovery workflows in bioinformatics: {A} scenario for the coupling of molecular regulatory pathways and gene-expression profiles}, booktitle = {MedInfo}, series = {Studies in Health Technology and Informatics}, volume = {160}, pages = {1304--1308}, publisher = {{IOS} Press}, year = {2010} }
@inproceedings{DBLP:conf/setn/PotamiasKKM10, author = {George Potamias and Lefteris Koumakis and Alexandros Kanterakis and Vassilis Moustakis}, title = {Towards the Discovery of Reliable Biomarkers from Gene-Expression Profiles: An Iterative Constraint Satisfaction Learning Approach}, booktitle = {{SETN}}, series = {Lecture Notes in Computer Science}, volume = {6040}, pages = {233--242}, publisher = {Springer}, year = {2010} }
@article{DBLP:journals/abi/DuZW09, author = {Minggang Du and Shanwen Zhang and Hong Wang}, title = {Tumor Classification Using High-Order Gene Expression Profiles Based on Multilinear {ICA}}, journal = {Adv. Bioinformatics}, volume = {2009}, pages = {926450:1--926450:9}, year = {2009} }
@article{DBLP:journals/bioinformatics/MagalhaesCC09, author = {Jo{\~{a}}o Pedro de Magalh{\~{a}}es and Jo{\~{a}}o Curado and George M. Church}, title = {Meta-analysis of age-related gene expression profiles identifies common signatures of aging}, journal = {Bioinform.}, volume = {25}, number = {7}, pages = {875--881}, year = {2009} }
@article{DBLP:journals/bioinformatics/QiZLS09, author = {Qihao Qi and Yingdong Zhao and Ming{-}Chung Li and Richard M. Simon}, title = {Non-negative matrix factorization of gene expression profiles: a plug-in for BRB-ArrayTools}, journal = {Bioinform.}, volume = {25}, number = {4}, pages = {545--547}, year = {2009} }
@article{DBLP:journals/bmcbi/JoungF09, author = {Je{-}Gun Joung and Zhangjun Fei}, title = {Computational identification of condition-specific miRNA targets based on gene expression profiles and sequence information}, journal = {{BMC} Bioinform.}, volume = {10}, number = {{S-1}}, year = {2009} }
@article{DBLP:journals/bmcbi/LiSWSC09, author = {Zhiguang Li and Zhenqiang Su and Zhining Wen and Leming M. Shi and Tao Chen}, title = {Microarray platform consistency is revealed by biologically functional analysis of gene expression profiles}, journal = {{BMC} Bioinform.}, volume = {10}, number = {{S-11}}, pages = {12}, year = {2009} }
@article{DBLP:journals/bmcbi/ZollanvariCBD09, author = {Amin Zollanvari and Mary Jane Cunningham and Ulisses M. Braga{-}Neto and Edward R. Dougherty}, title = {Analysis and modeling of time-course gene-expression profiles from nanomaterial-exposed primary human epidermal keratinocytes}, journal = {{BMC} Bioinform.}, volume = {10}, number = {{S-11}}, pages = {10}, year = {2009} }
@article{DBLP:journals/bmcsb/ShimamuraIYFNM09, author = {Teppei Shimamura and Seiya Imoto and Rui Yamaguchi and Andr{\'{e}} Fujita and Masao Nagasaki and Satoru Miyano}, title = {Recursive regularization for inferring gene networks from time-course gene expression profiles}, journal = {{BMC} Syst. Biol.}, volume = {3}, pages = {41}, year = {2009} }
@article{DBLP:journals/ijbra/WuXM09, author = {Fang{-}Xiang Wu and Zhonghang Xia and Lei Mu}, title = {Finding Significantly Expressed genes from time-course expression profiles}, journal = {Int. J. Bioinform. Res. Appl.}, volume = {5}, number = {1}, pages = {50--63}, year = {2009} }
@article{DBLP:journals/jcb/ChenW09, author = {Xi Chen and Lily Wang}, title = {Integrating Biological Knowledge with Gene Expression Profiles for Survival Prediction of Cancer}, journal = {J. Comput. Biol.}, volume = {16}, number = {2}, pages = {265--278}, year = {2009} }
@article{DBLP:journals/pr/HongC09, author = {Jin{-}Hyuk Hong and Sung{-}Bae Cho}, title = {Gene boosting for cancer classification based on gene expression profiles}, journal = {Pattern Recognit.}, volume = {42}, number = {9}, pages = {1761--1767}, year = {2009} }
@article{DBLP:journals/pr/LiewLCY09, author = {Alan Wee{-}Chung Liew and Ngai{-}Fong Law and Xiao{-}Qin Cao and Hong Yan}, title = {Statistical power of Fisher test for the detection of short periodic gene expression profiles}, journal = {Pattern Recognit.}, volume = {42}, number = {4}, pages = {549--556}, year = {2009} }
@article{DBLP:journals/tcbb/YukinawaOKI09, author = {Naoto Yukinawa and Shigeyuki Oba and Kikuya Kato and Shin Ishii}, title = {Optimal Aggregation of Binary Classifiers for Multiclass Cancer Diagnosis Using Gene Expression Profiles}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {6}, number = {2}, pages = {333--343}, year = {2009} }
@inproceedings{DBLP:conf/biocomp/SalinasK09, author = {Edward Salinas and Amitava Karmaker}, title = {Analysis of Correlations Between Genes and Tetrads of Transcription Factors Using Microarray Expression Profiles}, booktitle = {{BIOCOMP}}, pages = {148--152}, publisher = {{CSREA} Press}, year = {2009} }
@inproceedings{DBLP:conf/csie/ChenSCCE09, author = {Thomas C. Chen and Sandeep Sanga and Tina Y. Chou and Vittorio Cristini and Mary E. Edgerton}, title = {Neural Network with K-Means Clustering via {PCA} for Gene Expression Profile Analysis}, booktitle = {{CSIE} {(3)}}, pages = {670--673}, publisher = {{IEEE} Computer Society}, year = {2009} }
@inproceedings{DBLP:conf/gensips/BouaynayaSN09, author = {Nidhal Bouaynaya and Dan Schonfeld and Radhakrishnan Nagarajan}, title = {Analysis of temporal gene expression profiles using time-dependent {MUSIC} algorithm}, booktitle = {GENSiPS}, pages = {1--4}, publisher = {{IEEE}}, year = {2009} }
@inproceedings{DBLP:conf/icann/Martin-MerinoR09, author = {Manuel Mart{\'{\i}}n{-}Merino and Javier De Las Rivas}, title = {Kernel Alignment \emph{k}-NN for Human Cancer Classification Using the Gene Expression Profiles}, booktitle = {{ICANN} {(2)}}, series = {Lecture Notes in Computer Science}, volume = {5769}, pages = {195--204}, publisher = {Springer}, year = {2009} }
@inproceedings{DBLP:conf/icic/ChenH09, author = {Yu Chen and Kyungsook Han}, title = {Dynamic Identification and Visualization of Gene Regulatory Networks from Time-Series Gene Expression Profiles}, booktitle = {{ICIC} {(1)}}, series = {Lecture Notes in Computer Science}, volume = {5754}, pages = {65--74}, publisher = {Springer}, year = {2009} }
@inproceedings{DBLP:conf/icmla/FadeevMF09a, author = {Aleksey Fadeev and Oualid Missaoui and Hichem Frigui}, title = {Ensemble Possibilistic {K-NN} for Functional Clustering of Gene Expression Profiles in Human Cancers Challenge}, booktitle = {{ICMLA}}, pages = {439--442}, publisher = {{IEEE} Computer Society}, year = {2009} }
@inproceedings{DBLP:conf/ida/Martin-MerinoR09, author = {Manuel Mart{\'{\i}}n{-}Merino and Javier De Las Rivas}, title = {Improving k-NN for Human Cancer Classification Using the Gene Expression Profiles}, booktitle = {{IDA}}, series = {Lecture Notes in Computer Science}, volume = {5772}, pages = {107--118}, publisher = {Springer}, year = {2009} }
@inproceedings{DBLP:conf/iwann/JhunP09, author = {Min A. Jhun and Taesung Park}, title = {Clustering Method to Identify Gene Sets with Similar Expression Profiles in Adjacent Chromosomal Regions}, booktitle = {{IWANN} {(1)}}, series = {Lecture Notes in Computer Science}, volume = {5517}, pages = {837--844}, publisher = {Springer}, year = {2009} }
@inproceedings{DBLP:conf/prib/SubhaniNRB09, author = {Numanul Subhani and Alioune Ngom and Luis Rueda and Conrad J. Burden}, title = {Microarray Time-Series Data Clustering via Multiple Alignment of Gene Expression Profiles}, booktitle = {{PRIB}}, series = {Lecture Notes in Computer Science}, volume = {5780}, pages = {377--390}, publisher = {Springer}, year = {2009} }
@inproceedings{DBLP:conf/sac/SherminO09, author = {Akther Shermin and Mehmet A. Orgun}, title = {Using dynamic bayesian networks to infer gene regulatory networks from expression profiles}, booktitle = {{SAC}}, pages = {799--803}, publisher = {{ACM}}, year = {2009} }
@inproceedings{DBLP:conf/smc/LiewY09, author = {Alan Wee{-}Chung Liew and Hong Yan}, title = {Reliable Detection of Short Periodic Gene Expression Time Series Profiles in {DNA} Microarray Data}, booktitle = {{SMC}}, pages = {4274--4279}, publisher = {{IEEE}}, year = {2009} }
@article{DBLP:journals/artmed/ChiuCL08, author = {Shih{-}Hau Chiu and Chien{-}Chi Chen and Thy{-}Hou Lin}, title = {Using support vector regression to model the correlation between the clinical metastases time and gene expression profile for breast cancer}, journal = {Artif. Intell. Medicine}, volume = {44}, number = {3}, pages = {221--231}, year = {2008} }
@article{DBLP:journals/biodatamining/MaCSBKKN08, author = {Qicheng Ma and Gung{-}Wei Chirn and Joseph D. Szustakowski and Adel Bakhtiarova and Penelope A. Kosinski and Daniel M. Kemp and Nanguneri Nirmala}, title = {Uncovering mechanisms of transcriptional regulations by systematic mining of cis regulatory elements with gene expression profiles}, journal = {BioData Min.}, volume = {1}, year = {2008} }
@article{DBLP:journals/bioinformatics/BhattacharyaD08, author = {Anindya Bhattacharya and Rajat K. De}, title = {Divisive Correlation Clustering Algorithm {(DCCA)} for grouping of genes: detecting varying patterns in expression profiles}, journal = {Bioinform.}, volume = {24}, number = {11}, pages = {1359--1366}, year = {2008} }
@article{DBLP:journals/bioinformatics/HiroseYIYHCPM08, author = {Osamu Hirose and Ryo Yoshida and Seiya Imoto and Rui Yamaguchi and Tomoyuki Higuchi and Stephen D. Charnock{-}Jones and Cristin G. Print and Satoru Miyano}, title = {Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models}, journal = {Bioinform.}, volume = {24}, number = {7}, pages = {932--942}, year = {2008} }
@article{DBLP:journals/bmcbi/BuonaguroMAWTLMB08, author = {Luigi Buonaguro and Alessandro Monaco and Eleonora Aric{\`{o}} and Ena Wang and Maria Lina Tornesello and George K. Lewis and Francesco M. Marincola and Franco M. Buonaguro}, title = {Gene expression profile of peripheral blood mononuclear cells in response to HIV-VLPs stimulation}, journal = {{BMC} Bioinform.}, volume = {9}, number = {{S-2}}, year = {2008} }
@article{DBLP:journals/bmcbi/GormleyT08, author = {Michael Gormley and Aydin T{\"{o}}zeren}, title = {Expression profiles of switch-like genes accurately classify tissue and infectious disease phenotypes in model-based classification}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008} }
@article{DBLP:journals/bmcbi/TienLWC08, author = {Yin{-}Jing Tien and Yun{-}Shien Lee and Han{-}Ming Wu and Chun{-}Houh Chen}, title = {Methods for simultaneously identifying coherent local clusters with smooth global patterns in gene expression profiles}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008} }
@article{DBLP:journals/bmcsb/MarrGHM08, author = {Carsten Marr and Marcel Geertz and Marc{-}Thorsten H{\"{u}}tt and Georgi Muskhelishvili}, title = {Dissecting the logical types of network control in gene expression profiles}, journal = {{BMC} Syst. Biol.}, volume = {2}, pages = {18}, year = {2008} }
@article{DBLP:journals/ijbra/KnijnenburgWR08, author = {Theo A. Knijnenburg and Lodewyk F. A. Wessels and Marcel J. T. Reinders}, title = {Creating gene set activity profiles with time-series expression data}, journal = {Int. J. Bioinform. Res. Appl.}, volume = {4}, number = {3}, pages = {306--323}, year = {2008} }
@article{DBLP:journals/jece/AlexandrovGS08, author = {Theodore Alexandrov and Nina Golyandina and Alexander V. Spirov}, title = {Singular Spectrum Analysis of Gene Expression Profiles of Early \emph{Drosophila embryo}: Exponential-in-Distance Patterns}, journal = {J. Electr. Comput. Eng.}, volume = {2008}, year = {2008} }
@article{DBLP:journals/jib/TengC08, author = {Li Teng and Laiwan Chan}, title = {Discovering Distinct Patterns in Gene Expression Profiles}, journal = {J. Integr. Bioinform.}, volume = {5}, number = {2}, year = {2008} }
@article{DBLP:journals/ploscb/BaruchIGSS08, author = {Leehod Baruch and Shalev Itzkovitz and Michal Golan{-}Mashiach and Ehud Shapiro and Eran Segal}, title = {Using Expression Profiles of \emph{Caenorhabditis elegans} Neurons To Identify Genes That Mediate Synaptic Connectivity}, journal = {PLoS Comput. Biol.}, volume = {4}, number = {7}, year = {2008} }
@inproceedings{DBLP:conf/bibe/MizutaniS08, author = {Eriko Mizutani and Jun Sese}, title = {{GOMA:} Web utility for direct finding of enriched Gene Ontology terms from gene expression profile}, booktitle = {{BIBE}}, pages = {1--6}, publisher = {{IEEE}}, year = {2008} }
@inproceedings{DBLP:conf/bibm/RenO08, author = {Siyuan Ren and Zoran Obradovic}, title = {Improvement of Survival Prediction from Gene Expression Profiles by Mining of Prior Knowledge}, booktitle = {{BIBM}}, pages = {372--375}, publisher = {{IEEE} Computer Society}, year = {2008} }
@inproceedings{DBLP:conf/bibm/Wu08, author = {Fang{-}Xiang Wu}, title = {Detecting Significantly Expressed Genes from Their Time-Course Expression Profiles and Its Validation}, booktitle = {{BIBM}}, pages = {170--175}, publisher = {{IEEE} Computer Society}, year = {2008} }
@inproceedings{DBLP:conf/biocomp/MeiMAMDTLG08, author = {Nan Mei and Mugimane G. Manjanatha and Mizuo Azuma and Lea P. McDaniel and Stacey L. Dial and Jo Tseng and Wayne Liao and Lei Guo}, title = {Liver Gene Expression Profile of Mice Treated with Acrylamide in Drinking Water}, booktitle = {{BIOCOMP}}, pages = {131--137}, publisher = {{CSREA} Press}, year = {2008} }
@inproceedings{DBLP:conf/biocomp/SalinasK08, author = {Edward Salinas and Amitava Karmaker}, title = {Analysis of Correlations between Genes and Triads of Transcription Factors Using Microarray Expression Profiles}, booktitle = {{BIOCOMP}}, pages = {170--174}, publisher = {{CSREA} Press}, year = {2008} }
@inproceedings{DBLP:conf/bmei/QinY08, author = {Hong Qin and Li Yang}, title = {Detection of Changes in Transitive Associations by Shortest-path Analysis of Protein Interaction Networks Integrated with Gene Expression Profiles}, booktitle = {{BMEI} {(1)}}, pages = {418--423}, publisher = {{IEEE} Computer Society}, year = {2008} }
@inproceedings{DBLP:conf/cec/HuangCHH08, author = {Hui{-}Ling Huang and Kuan{-}Wei Chen and Shinn{-}Jang Ho and Shinn{-}Ying Ho}, title = {Inferring S-system models of genetic networks from a time-series real data set of gene expression profiles}, booktitle = {{IEEE} Congress on Evolutionary Computation}, pages = {2788--2793}, publisher = {{IEEE}}, year = {2008} }
@inproceedings{DBLP:conf/cec/RuanWLL08, author = {Xiaogang Ruan and Jinlian Wang and Hui Li and Xiaoming Li}, title = {Study of tumor molecular diagnosis model based on artificial neural network with gene expression profile}, booktitle = {{IEEE} Congress on Evolutionary Computation}, pages = {1051--1056}, publisher = {{IEEE}}, year = {2008} }
@inproceedings{DBLP:conf/cibcb/BensoCPS08, author = {Alfredo Benso and Stefano Di Carlo and Gianfranco Politano and Luca Sterpone}, title = {A graph-based representation of Gene Expression profiles in {DNA} microarrays}, booktitle = {{CIBCB}}, pages = {75--82}, publisher = {{IEEE}}, year = {2008} }
@inproceedings{DBLP:conf/fskd/WeiYWG08, author = {Jinmao Wei and Xin{-}Bin Yang and Shuqin Wang and Li Gu}, title = {A Novel Rough Hypercuboid Method for Classifying Cancers Based on Gene Expression Profiles}, booktitle = {{FSKD} {(2)}}, pages = {262--266}, publisher = {{IEEE} Computer Society}, year = {2008} }
@inproceedings{DBLP:conf/his/Rubio-EscuderoMRZ08, author = {Cristina Rubio{-}Escudero and Francisco Mart{\'{\i}}nez{-}{\'{A}}lvarez and Roc{\'{\i}}o Romero{-}Z{\'{a}}liz and Igor Zwir}, title = {Classification of Gene Expression Profiles: Comparison of K-means and Expectation Maximization Algorithms}, booktitle = {{HIS}}, pages = {831--836}, publisher = {{IEEE} Computer Society}, year = {2008} }
@inproceedings{DBLP:conf/ijcnn/KasturiA08, author = {Jyotsna Kasturi and Raj Acharya}, title = {A new information-theoretic dissimilarity for clustering time-dependent gene expression profiles modeled withradial basis functions}, booktitle = {{IJCNN}}, pages = {2857--2864}, publisher = {{IEEE}}, year = {2008} }
@inproceedings{DBLP:conf/prib/NagarajanUM08, author = {Radhakrishnan Nagarajan and Meenakshi Upreti and Mariofanna G. Milanova}, title = {Identifying Non-random Patterns from Gene Expression Profiles}, booktitle = {{PRIB}}, series = {Lecture Notes in Computer Science}, volume = {5265}, pages = {299--310}, publisher = {Springer}, year = {2008} }
@inproceedings{DBLP:conf/psb/Badea08, author = {Liviu Badea}, title = {Extracting Gene Expression Profiles Common to Colon and Pancreatic Adenocarcinoma Using Simultaneous Nonnegative Matrix Factorization}, booktitle = {Pacific Symposium on Biocomputing}, pages = {267--278}, publisher = {World Scientific}, year = {2008} }
@inproceedings{DBLP:conf/sac/ShaoYN08, author = {Haifeng Shao and Bei Yu and Joseph H. Nadeau}, title = {Strangeness-based feature weighting and classification of gene expression profiles}, booktitle = {{SAC}}, pages = {1292--1296}, publisher = {{ACM}}, year = {2008} }
@inproceedings{DBLP:conf/setn/KanterakisKMP08, author = {Alexandros Kanterakis and Dimitris Kafetzopoulos and Vassilis Moustakis and George Potamias}, title = {Mining Gene Expression Profiles and Gene Regulatory Networks: Identification of Phenotype-Specific Molecular Mechanisms}, booktitle = {{SETN}}, series = {Lecture Notes in Computer Science}, volume = {5138}, pages = {97--109}, publisher = {Springer}, year = {2008} }
@inproceedings{DBLP:conf/wob/LiAS08, author = {Shenggang Li and Miguel A. Andrade{-}Navarro and David Sankoff}, title = {A Customized Class of Functions for Modeling and Clustering Gene Expression Profiles in Embryonic Stem Cells}, booktitle = {{BSB}}, series = {Lecture Notes in Computer Science}, volume = {5167}, pages = {92--103}, publisher = {Springer}, year = {2008} }
@incollection{DBLP:series/asc/BlancoMR08, author = {{\'{A}}ngela Blanco and Manuel Mart{\'{\i}}n{-}Merino and Javier De Las Rivas}, title = {Ensemble of Support Vector Machines to Improve the Cancer Class Prediction Based on the Gene Expression Profiles}, booktitle = {Innovations in Hybrid Intelligent Systems}, series = {Advances in Soft Computing}, volume = {44}, pages = {393--400}, publisher = {Springer}, year = {2008} }
@article{DBLP:journals/bioinformatics/GyeneseiWBSS07, author = {Attila Gyenesei and Ulrich Wagner and Simon Barkow{-}Oesterreicher and Etzard Stolte and Ralph Schlapbach}, title = {Mining co-regulated gene profiles for the detection of functional associations in gene expression data}, journal = {Bioinform.}, volume = {23}, number = {15}, pages = {1927--1935}, year = {2007} }
@article{DBLP:journals/bioinformatics/WongWW07, author = {Dorothy S. V. Wong and Frederick K. Wong and Graham R. Wood}, title = {A multi-stage approach to clustering and imputation of gene expression profiles}, journal = {Bioinform.}, volume = {23}, number = {8}, pages = {998--1005}, year = {2007} }
@article{DBLP:journals/bmcbi/BlancoMR07, author = {{\'{A}}ngela Blanco and Manuel Mart{\'{\i}}n{-}Merino and Javier De Las Rivas}, title = {Combining dissimilarity based classifiers for cancer prediction using gene expression profiles}, journal = {{BMC} Bioinform.}, volume = {8}, number = {{S-8}}, year = {2007} }
@article{DBLP:journals/bmcbi/GuoMDFC07, author = {Lei Guo and Nan Mei and Stacey L. Dial and James C. Fuscoe and Tao Chen}, title = {Comparison of gene expression profiles altered by comfrey and riddelliine in rat liver}, journal = {{BMC} Bioinform.}, volume = {8}, number = {{S-7}}, year = {2007} }
@article{DBLP:journals/bmcbi/KimZJCLFH07, author = {Kyungpil Kim and Shibo Zhang and Keni Jiang and Li Cai and In{-}Beum Lee and Lewis J. Feldman and Haiyan Huang}, title = {Measuring similarities between gene expression profiles through new data transformations}, journal = {{BMC} Bioinform.}, volume = {8}, year = {2007} }
@article{DBLP:journals/bmcbi/PittelkowW07, author = {Yvonne E. Pittelkow and Susan R. Wilson}, title = {h-Profile plots for the discovery and exploration of patterns in gene expression data with an application to time course data}, journal = {{BMC} Bioinform.}, volume = {8}, year = {2007} }
@article{DBLP:journals/bmcbi/SupperSWHZ07, author = {Jochen Supper and Martin Strauch and Dierk Wanke and Klaus Harter and Andreas Zell}, title = {{EDISA:} extracting biclusters from multiple time-series of gene expression profiles}, journal = {{BMC} Bioinform.}, volume = {8}, year = {2007} }
@article{DBLP:journals/bmcsb/LiSYMNRHC07, author = {Zheng Li and Shireesh Srivastava and Xuerui Yang and Sheenu Mittal and Paul Norton and James H. Resau and Brian B. Haab and Christina Chan}, title = {A hierarchical approach employing metabolic and gene expression profiles to identify the pathways that confer cytotoxicity in HepG2 cells}, journal = {{BMC} Syst. Biol.}, volume = {1}, pages = {21}, year = {2007} }
@article{DBLP:journals/candc/KimKC07, author = {Shinuk Kim and Junil Kim and Kwang{-}Hyun Cho}, title = {Inferring gene regulatory networks from temporal expression profiles under time-delay and noise}, journal = {Comput. Biol. Chem.}, volume = {31}, number = {4}, pages = {239--245}, year = {2007} }
@article{DBLP:journals/cbm/Asyali07, author = {Musa H. Asyali}, title = {Gene expression profile class prediction using linear Bayesian classifiers}, journal = {Comput. Biol. Medicine}, volume = {37}, number = {12}, pages = {1690--1699}, year = {2007} }
@article{DBLP:journals/csda/Liang07, author = {Faming Liang}, title = {Use of SVD-based probit transformation in clustering gene expression profiles}, journal = {Comput. Stat. Data Anal.}, volume = {51}, number = {12}, pages = {6355--6366}, year = {2007} }
@article{DBLP:journals/ejbsb/AburataniSSHKH07, author = {Sachiyo Aburatani and Fuyan Sun and Shigeru Saito and Masao Honda and Shuichi Kaneko and Katsuhisa Horimoto}, title = {Gene Systems Network Inferred from Expression Profiles in Hepatocellular Carcinogenesis by Graphical Gaussian Model}, journal = {{EURASIP} J. Bioinform. Syst. Biol.}, volume = {2007}, year = {2007} }
@article{DBLP:journals/jcb/KaminskiB07, author = {Naftali Kaminski and Ziv Bar{-}Joseph}, title = {A Patient-Gene Model for Temporal Expression Profiles in Clinical Studies}, journal = {J. Comput. Biol.}, volume = {14}, number = {3}, pages = {324--338}, year = {2007} }
@article{DBLP:journals/jib/KarmakerYDKK07, author = {Amitava Karmaker and Kihoon Yoon and Mark Doderer and Russell Kruzelock and Stephen Kwek}, title = {Identifying Transcription Regulatory Elements in the Human and Mouse Genomes Using Tissue-specific Gene Expression Profiles}, journal = {J. Integr. Bioinform.}, volume = {4}, number = {2}, year = {2007} }
@article{DBLP:journals/jifs/ParkC07, author = {Han{-}Saem Park and Sung{-}Bae Cho}, title = {Evolutionary fuzzy cluster analysis with Bayesian validation of gene expression profiles}, journal = {J. Intell. Fuzzy Syst.}, volume = {18}, number = {6}, pages = {543--559}, year = {2007} }
@article{DBLP:journals/mbec/HouSLZ07, author = {Jingyu Hou and Wei Shi and Gang Li and Wanlei Zhou}, title = {An effective non-parametric method for globally clustering genes from expression profiles}, journal = {Medical Biol. Eng. Comput.}, volume = {45}, number = {12}, pages = {1175--1185}, year = {2007} }
@article{DBLP:journals/nar/ParkinsonKSACFHKLLMRSWSB07, author = {Helen E. Parkinson and Misha Kapushesky and Mohammadreza Shojatalab and Niran Abeygunawardena and Richard Coulson and Anna Farne and Ele Holloway and Nikolay Kolesnykov and P. Lilja and Margus Lukk and Roby Mani and Tim F. Rayner and Anjan Sharma and E. William and Ugis Sarkans and Alvis Brazma}, title = {ArrayExpress - a public database of microarray experiments and gene expression profiles}, journal = {Nucleic Acids Res.}, volume = {35}, number = {Database-Issue}, pages = {747--750}, year = {2007} }
@article{DBLP:journals/ni/Cavallaro07, author = {Sebastiano Cavallaro}, title = {Neuronal Apoptosis Revealed by Genomic Analysis: Integrating Gene Expression Profiles with Functional Information}, journal = {Neuroinformatics}, volume = {5}, number = {2}, pages = {115--126}, year = {2007} }
@article{DBLP:journals/ploscb/ChenBCGLS07, author = {Yili Chen and Thomas W. Blackwell and Ji Chen and Jing Gao and Angel W. Lee and David J. States}, title = {Integration of Genome and Chromatin Structure with Gene Expression Profiles To Predict c-\emph{MYC} Recognition Site Binding and Function}, journal = {PLoS Comput. Biol.}, volume = {3}, number = {4}, year = {2007} }
@article{DBLP:journals/prl/LiangW07, author = {Faming Liang and Naisyin Wang}, title = {Dynamic agglomerative clustering of gene expression profiles}, journal = {Pattern Recognit. Lett.}, volume = {28}, number = {9}, pages = {1062--1076}, year = {2007} }
@article{DBLP:journals/tcbb/HoHYH07, author = {Shinn{-}Ying Ho and Chih{-}Hung Hsieh and Fu{-}Chieh Yu and Hui{-}Ling Huang}, title = {An Intelligent Two-Stage Evolutionary Algorithm for Dynamic Pathway Identification From Gene Expression Profiles}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {4}, number = {4}, pages = {648--704}, year = {2007} }
@inproceedings{DBLP:conf/ab/CasagrandeCFPRVM07, author = {Alberto Casagrande and Kevin Casey and Rachele Falchi and Carla Piazza and Benedetto Ruperti and Giannina Vizzotto and Bud Mishra}, title = {Translating Time-Course Gene Expression Profiles into Semi-algebraic Hybrid Automata Via Dimensionality Reduction}, booktitle = {{AB}}, series = {Lecture Notes in Computer Science}, volume = {4545}, pages = {51--65}, publisher = {Springer}, year = {2007} }
@inproceedings{DBLP:conf/bibe/KimK07, author = {Sheehyun Kim and Dongsup Kim}, title = {Inference of Gene Regulatory Networks Using Time Sliding Comparison and Transcriptional Lagging Time from Time Series Gene Expression Profiles}, booktitle = {{BIBE}}, pages = {1035--1040}, publisher = {{IEEE} Computer Society}, year = {2007} }
@inproceedings{DBLP:conf/bibm/SmithSR07, author = {Brandon J. Smith and Bruce R. Southey and Sandra L. Rodriguez{-}Zas}, title = {Smoothing Spline Mixed Effects Modeling of Multifactorial Gene Expression Profiles}, booktitle = {{BIBM}}, pages = {325--332}, publisher = {{IEEE} Computer Society}, year = {2007} }
@inproceedings{DBLP:conf/biocomp/KarmakerHK07, author = {Amitava Karmaker and Stephen Harris and Stephen Kwek}, title = {Identification of cis-Regulatory Elements from Cross-Genome Comparison and Gene Expression Profile Analysis}, booktitle = {{BIOCOMP}}, pages = {31--36}, publisher = {{CSREA} Press}, year = {2007} }
@inproceedings{DBLP:conf/birthday/SakakibaraYKS07, author = {Yasubumi Sakakibara and Takashi Yokomori and Satoshi Kobayashi and Akira Suyama}, title = {Probabilistic Inference in Test Tube and its Application to Gene Expression Profiles}, booktitle = {Formal Models, Languages and Applications}, series = {Series in Machine Perception and Artificial Intelligence}, volume = {66}, pages = {304--319}, publisher = {World Scientific}, year = {2007} }
@inproceedings{DBLP:conf/cis/WangCL07, author = {Shulin Wang and Huowang Chen and Shutao Li}, title = {Gene Selection Using Neighborhood Rough Set from Gene Expression Profiles}, booktitle = {{CIS}}, pages = {959--963}, publisher = {{IEEE} Computer Society}, year = {2007} }
@inproceedings{DBLP:conf/epia/WangCLZ07, author = {Shulin Wang and Huowang Chen and Shutao Li and Dingxing Zhang}, title = {Feature Extraction from Tumor Gene Expression Profiles Using {DCT} and {DFT}}, booktitle = {{EPIA} Workshops}, series = {Lecture Notes in Computer Science}, volume = {4874}, pages = {485--496}, publisher = {Springer}, year = {2007} }
@inproceedings{DBLP:conf/fbit/JinLC07, author = {Hee{-}Jeong Jin and Ji{-}Yeon Lee and Hwan{-}Gue Cho}, title = {Detecting Regulator-Target Gene Pairs from Expression Profile of Microarray}, booktitle = {{FBIT}}, pages = {199--204}, publisher = {{IEEE} Computer Society}, year = {2007} }
@inproceedings{DBLP:conf/isbra/Wu07, author = {Fang{-}Xiang Wu}, title = {Significance Analysis of Time-Course Gene Expression Profiles}, booktitle = {{ISBRA}}, series = {Lecture Notes in Computer Science}, volume = {4463}, pages = {13--24}, publisher = {Springer}, year = {2007} }
@inproceedings{DBLP:conf/mlmta/KarmakerDHK07, author = {Amitava Karmaker and Mark Doderer and Stephen Harris and Stephen Kwek}, title = {Discovery of Transcription Factors Using Protein Subcellular Localization Prediction and Gene Expression Profile Analysis}, booktitle = {{MLMTA}}, pages = {65--71}, publisher = {{CSREA} Press}, year = {2007} }
@inproceedings{DBLP:conf/recomb/PradinesDRF07, author = {Jo{\"{e}}l R. Pradines and Vlado Danc{\'{\i}}k and Alan Ruttenberg and Victor Farutin}, title = {Connectedness Profiles in Protein Networks for the Analysis of Gene Expression Data}, booktitle = {{RECOMB}}, series = {Lecture Notes in Computer Science}, volume = {4453}, pages = {296--310}, publisher = {Springer}, year = {2007} }
@incollection{DBLP:books/ws/BMW07-papers/NomanI07, author = {Nasimul Noman and Hitoshi Iba}, title = {Inferring Regulations in a Genomic Network from Gene Expression Profiles}, booktitle = {Analysis of Biological Data: {A} Soft Computing Approach}, series = {Science, Engineering, and Biology Informatics}, volume = {3}, pages = {205--229}, publisher = {World Scientific}, year = {2007} }
@article{DBLP:journals/bioinformatics/BansalGB06, author = {Mukesh Bansal and Giusy Della Gatta and Diego di Bernardo}, title = {Inference of gene regulatory networks and compound mode of action from time course gene expression profiles}, journal = {Bioinform.}, volume = {22}, number = {7}, pages = {815--822}, year = {2006} }
@article{DBLP:journals/bioinformatics/Buturovic06, author = {Ljubomir J. Buturovic}, title = {{PCP:} a program for supervised classification of gene expression profiles}, journal = {Bioinform.}, volume = {22}, number = {2}, pages = {245--247}, year = {2006} }
@article{DBLP:journals/bioinformatics/LiuSYGBM06, author = {Xiangdong Liu and Siva Sivaganesan and Ka Yee Yeung and Junhai Guo and Roger Eugene Bumgarner and Mario Medvedovic}, title = {Context-specific infinite mixtures for clustering gene expression profiles across diverse microarray dataset}, journal = {Bioinform.}, volume = {22}, number = {14}, pages = {1737--1744}, year = {2006} }
@article{DBLP:journals/bioinformatics/NgMWJN06, author = {Shu{-}Kay Ng and Geoffrey J. McLachlan and Kui Wang and Liat Ben{-}Tovim Jones and S.{-}W. Ng}, title = {A Mixture model with random-effects components for clustering correlated gene-expression profiles}, journal = {Bioinform.}, volume = {22}, number = {14}, pages = {1745--1752}, year = {2006} }
@article{DBLP:journals/bioinformatics/PrietoRSLR06, author = {Carlos Prieto and M. J. Rivas and J. M. S{\'{a}}nchez and Jes{\'{u}}s L{\'{o}}pez{-}Fidalgo and Javier De Las Rivas}, title = {Algorithm to find gene expression profiles of deregulation and identify families of disease-altered genes}, journal = {Bioinform.}, volume = {22}, number = {9}, pages = {1103--1110}, year = {2006} }
@article{DBLP:journals/bioinformatics/TanSHXTFW06, author = {Yongxi Tan and Leming M. Shi and Saber M. Hussain and Jun Xu and Weida Tong and John M. Frazier and Charles Wang}, title = {Integrating time-course microarray gene expression profiles with cytotoxicity for identification of biomarkers in primary rat hepatocytes exposed to cadmium}, journal = {Bioinform.}, volume = {22}, number = {1}, pages = {77--87}, year = {2006} }
@article{DBLP:journals/bioinformatics/WangLGLLZYXWRY06, author = {Dong Wang and Yingli Lv and Zheng Guo and Xia Li and Yanhui Li and Jing Zhu and Da Yang and Jianzhen Xu and Chenguang Wang and Shaoqi Rao and Baofeng Yang}, title = {Effects of replacing the unreliable cDNA microarray measurements on the disease classification based on gene expression profiles and functional modules}, journal = {Bioinform.}, volume = {22}, number = {23}, pages = {2883--2889}, year = {2006} }
@article{DBLP:journals/bioinformatics/YoshidaHIM06, author = {Ryo Yoshida and Tomoyuki Higuchi and Seiya Imoto and Satoru Miyano}, title = {ArrayCluster: an analytic tool for clustering, data visualization and module finder on gene expression profiles}, journal = {Bioinform.}, volume = {22}, number = {12}, pages = {1538--1539}, year = {2006} }
@article{DBLP:journals/bmcbi/ChenGZSFSFM06, author = {Tao Chen and Lei Guo and Lu Zhang and Leming M. Shi and Hong Fang and Yongming Sun and James C. Fuscoe and Nan Mei}, title = {Gene Expression Profiles Distinguish the Carcinogenic Effects of Aristolochic Acid in Target (Kidney) and Non-target (Liver) Tissues in Rats}, journal = {{BMC} Bioinform.}, volume = {7}, number = {{S-2}}, year = {2006} }
@article{DBLP:journals/bmcbi/DohertyCM06, author = {Jason M. Doherty and Lynn K. Carmichael and Jason C. Mills}, title = {GOurmet: {A} tool for quantitative comparison and visualization of gene expression profiles based on gene ontology {(GO)} distributions}, journal = {{BMC} Bioinform.}, volume = {7}, pages = {151}, year = {2006} }
@article{DBLP:journals/bmcbi/HaaftenSJEDSSWPE06, author = {Rachel I. M. van Haaften and Blanche Schroen and Ben J. A. Janssen and Arie van Erk and Jacques J. M. Debets and Hubert J. M. Smeets and Jos F. M. Smits and Arthur van den Wijngaard and Yigal M. Pinto and Chris T. A. Evelo}, title = {Biologically relevant effects of mRNA amplification on gene expression profiles}, journal = {{BMC} Bioinform.}, volume = {7}, pages = {200}, year = {2006} }
@article{DBLP:journals/bmcbi/RuzanovJ06, author = {Peter Ruzanov and Steven J. M. Jones}, title = {An interactive tool for visualization of relationships between gene expression profiles}, journal = {{BMC} Bioinform.}, volume = {7}, pages = {193}, year = {2006} }
@article{DBLP:journals/bmcbi/VerhaakSBDHMSLV06, author = {Roel G. W. Verhaak and Mathijs A. Sanders and Maarten A. Bijl and Ruud Delwel and Sebastiaan Horsman and Michael J. Moorhouse and Peter J. van der Spek and Bob L{\"{o}}wenberg and Peter J. M. Valk}, title = {HeatMapper: powerful combined visualization of gene expression profile correlations, genotypes, phenotypes and sample characteristics}, journal = {{BMC} Bioinform.}, volume = {7}, pages = {337}, year = {2006} }
@article{DBLP:journals/ijbra/MathurDS06, author = {Sunil K. Mathur and Atul M. Doke and Ajit Sadana}, title = {Identification of hair cycle-associated genes from time-course gene expression profile using fractal analysis}, journal = {Int. J. Bioinform. Res. Appl.}, volume = {2}, number = {3}, pages = {249--258}, year = {2006} }
@article{DBLP:journals/prl/ZhangZ06, author = {Qiong Zhang and Yingsha Zhang}, title = {Hierarchical clustering of gene expression profiles with graphics hardware acceleration}, journal = {Pattern Recognit. Lett.}, volume = {27}, number = {6}, pages = {676--681}, year = {2006} }
@inproceedings{DBLP:conf/ai/BariR06, author = {Ataul Bari and Luis Rueda}, title = {A New Profile Alignment Method for Clustering Gene Expression Data}, booktitle = {Canadian {AI}}, series = {Lecture Notes in Computer Science}, volume = {4013}, pages = {86--97}, publisher = {Springer}, year = {2006} }
@inproceedings{DBLP:conf/annpr/KestlerLM06, author = {Hans A. Kestler and Wolfgang Lindner and Andr{\'{e}} M{\"{u}}ller}, title = {Learning and Feature Selection Using the Set Covering Machine with Data-Dependent Rays on Gene Expression Profiles}, booktitle = {{ANNPR}}, series = {Lecture Notes in Computer Science}, volume = {4087}, pages = {286--297}, publisher = {Springer}, year = {2006} }
@inproceedings{DBLP:conf/ausai/ZhangLXG06, author = {Chen Zhang and Yanchun Liang and Wei Xiong and Hong{-}Wei Ge}, title = {Selection for Feature Gene Subset in Microarray Expression Profiles Based on an Improved Genetic Algorithm}, booktitle = {Australian Conference on Artificial Intelligence}, series = {Lecture Notes in Computer Science}, volume = {4304}, pages = {161--169}, publisher = {Springer}, year = {2006} }
@inproceedings{DBLP:conf/cec/NomanI06, author = {Nasimul Noman and Hitoshi Iba}, title = {On the Reconstruction of Gene Regulatory Networks from Noisy Expression Profiles}, booktitle = {{IEEE} Congress on Evolutionary Computation}, pages = {2543--2550}, publisher = {{IEEE}}, year = {2006} }
@inproceedings{DBLP:conf/grc/Al-MubaidG06, author = {Hisham Al{-}Mubaid and Noushin Ghaffari}, title = {Identifying the most significant genes from gene expression profiles for sample classification}, booktitle = {GrC}, pages = {655--658}, publisher = {{IEEE}}, year = {2006} }
@inproceedings{DBLP:conf/icde/XuLTW06, author = {Xin Xu and Ying Lu and Anthony K. H. Tung and Wei Wang}, title = {Mining Shifting-and-Scaling Co-Regulation Patterns on Gene Expression Profiles}, booktitle = {{ICDE}}, pages = {89}, publisher = {{IEEE} Computer Society}, year = {2006} }
@inproceedings{DBLP:conf/ideal/Rubio-EscuderoVCZ06, author = {Cristina Rubio{-}Escudero and Coral del Val and Oscar Cord{\'{o}}n and Igor Zwir}, title = {Decision Making Association Rules for Recognition of Differential Gene Expression Profiles}, booktitle = {{IDEAL}}, series = {Lecture Notes in Computer Science}, volume = {4224}, pages = {1137--1149}, publisher = {Springer}, year = {2006} }
@inproceedings{DBLP:conf/isda/WangWCT06, author = {Shulin Wang and Ji Wang and Huowang Chen and Wensheng Tang}, title = {The Classification of Tumor Using Gene Expression Profile Based on Support Vector Machines and Factor Analysis}, booktitle = {{ISDA} {(2)}}, pages = {471--476}, publisher = {{IEEE} Computer Society}, year = {2006} }
@inproceedings{DBLP:conf/ismb/EdelmanPGBBFM06, author = {Elena J. Edelman and Alessandro Porrello and Justin Guinney and Bala Balakumaran and Andrea Bild and Phillip G. Febbo and Sayan Mukherjee}, title = {Analysis of sample set enrichment scores: assaying the enrichment of sets of genes for individual samples in genome-wide expression profiles}, booktitle = {{ISMB} (Supplement of Bioinformatics)}, pages = {122--116}, year = {2006} }
@inproceedings{DBLP:conf/ismb/QiMKHJGG06, author = {Yuan (Alan) Qi and Patrycja E. Missiuro and Ashish Kapoor and Craig P. Hunter and Tommi S. Jaakkola and David K. Gifford and Hui Ge}, title = {Semi-supervised analysis of gene expression profiles for lineage-specific development in the \emph{Caenorhabditis elegans} embryo}, booktitle = {{ISMB} (Supplement of Bioinformatics)}, pages = {417--423}, year = {2006} }
@inproceedings{DBLP:conf/ispa/XiongZZL06, author = {Wei Xiong and Chen Zhang and Chunguang Zhou and Yanchun Liang}, title = {Selection for Feature Gene Subset in Microarray Expression Profiles Based on a Hybrid Algorithm Using {SVM} and {GA}}, booktitle = {{ISPA} Workshops}, series = {Lecture Notes in Computer Science}, volume = {4331}, pages = {637--647}, publisher = {Springer}, year = {2006} }
@inproceedings{DBLP:conf/pakdd/JinXBG06, author = {Xin Jin and Anbang Xu and Rongfang Bie and Ping Guo}, title = {Machine Learning Techniques and Chi-Square Feature Selection for Cancer Classification Using {SAGE} Gene Expression Profiles}, booktitle = {BioDM}, series = {Lecture Notes in Computer Science}, volume = {3916}, pages = {106--115}, publisher = {Springer}, year = {2006} }
@inproceedings{DBLP:conf/pakdd/KimK06, author = {Dae{-}Won Kim and Bo{-}Yeong Kang}, title = {Iterative Clustering Analysis for Grouping Missing Data in Gene Expression Profiles}, booktitle = {{PAKDD}}, series = {Lecture Notes in Computer Science}, volume = {3918}, pages = {129--138}, publisher = {Springer}, year = {2006} }
@inproceedings{DBLP:conf/ppswr/Badea06, author = {Liviu Badea}, title = {Semantic Web Reasoning for Analyzing Gene Expression Profiles}, booktitle = {{PPSWR}}, series = {Lecture Notes in Computer Science}, volume = {4187}, pages = {78--89}, publisher = {Springer}, year = {2006} }
@inproceedings{DBLP:conf/psb/BorgwardtVK06, author = {Karsten M. Borgwardt and S. V. N. Vishwanathan and Hans{-}Peter Kriegel}, title = {Class Prediction from Time Series Gene Expression Profiles Using Dynamical Systems Kernels}, booktitle = {Pacific Symposium on Biocomputing}, pages = {547--558}, publisher = {World Scientific}, year = {2006} }
@inproceedings{DBLP:conf/psb/ImotoTAYPCSSTKM06, author = {Seiya Imoto and Yoshinori Tamada and Hiromitsu Araki and Kaori Yasuda and Cristin G. Print and Stephen D. Charnock{-}Jones and Deborah Sanders and Christopher J. Savoie and Kousuke Tashiro and Satoru Kuhara and Satoru Miyano}, title = {Computational Strategy for Discovering Druggable Gene Networks from Genome-Wide {RNA} Expression Profiles}, booktitle = {Pacific Symposium on Biocomputing}, pages = {559--571}, publisher = {World Scientific}, year = {2006} }
@inproceedings{DBLP:conf/recomb/KaminskiB06, author = {Naftali Kaminski and Ziv Bar{-}Joseph}, title = {A Patient-Gene Model for Temporal Expression Profiles in Clinical Studies}, booktitle = {{RECOMB}}, series = {Lecture Notes in Computer Science}, volume = {3909}, pages = {69--82}, publisher = {Springer}, year = {2006} }
@inproceedings{DBLP:conf/recomb/WangRS06, author = {Ling Wang and Marco Ramoni and Paola Sebastiani}, title = {Clustering Short Gene Expression Profiles}, booktitle = {{RECOMB}}, series = {Lecture Notes in Computer Science}, volume = {3909}, pages = {60--68}, publisher = {Springer}, year = {2006} }
@incollection{DBLP:series/sci/TsengC06, author = {Vincent S. Tseng and Yen{-}Lo Chen}, title = {An Effective Approach for Mining Time-Series Gene Expression Profile}, booktitle = {Foundations and Novel Approaches in Data Mining}, series = {Studies in Computational Intelligence}, volume = {9}, pages = {363--376}, publisher = {Springer}, year = {2006} }
@article{DBLP:journals/bioinformatics/BhardwajL05, author = {Nitin Bhardwaj and Hui Lu}, title = {Correlation between gene expression profiles and protein-protein interactions within and across genomes}, journal = {Bioinform.}, volume = {21}, number = {11}, pages = {2730--2738}, year = {2005} }
@article{DBLP:journals/bioinformatics/BhasiFR05, author = {Kavitha Bhasi and Alan Forrest and Murali Ramanathan}, title = {{SPLINDID:} a semi-parametric, model-based method for obtaining transcription rates and gene regulation parameters from genomic and proteomic expression profiles}, journal = {Bioinform.}, volume = {21}, number = {20}, pages = {3873--3879}, year = {2005} }
@article{DBLP:journals/bioinformatics/CarauxP05, author = {Gilles Caraux and Sylvie Pinloche}, title = {PermutMatrix: a graphical environment to arrange gene expression profiles in optimal linear order}, journal = {Bioinform.}, volume = {21}, number = {7}, pages = {1280--1281}, year = {2005} }
@article{DBLP:journals/bioinformatics/PintoCHRA05, author = {Francisco R. Pinto and L. Ashley Cowart and Yusuf A. Hannun and B{\"{a}}rbel Rohrer and Jonas S. Almeida}, title = {Local correlation of expression profiles with gene annotations-proof of concept for a general conciliatory method}, journal = {Bioinform.}, volume = {21}, number = {7}, pages = {1037--1045}, year = {2005} }
@article{DBLP:journals/bioinformatics/TanNXWG05, author = {Aik Choon Tan and Daniel Q. Naiman and Lei Xu and Raimond L. Winslow and Donald Geman}, title = {Simple decision rules for classifying human cancers from gene expression profiles}, journal = {Bioinform.}, volume = {21}, number = {20}, pages = {3896--3904}, year = {2005} }
@article{DBLP:journals/bmcbi/GuoZLWXYZWWTWR05, author = {Zheng Guo and Tianwen Zhang and Xia Li and Qi Wang and Jianzhen Xu and Hui Yu and Jing Zhu and Haiyun Wang and Chenguang Wang and Eric J. Topol and Qing Wang and Shaoqi Rao}, title = {Towards precise classification of cancers based on robust gene functional expression profiles}, journal = {{BMC} Bioinform.}, volume = {6}, pages = {58}, year = {2005} }
@article{DBLP:journals/bmcbi/HuGB05, author = {Pingzhao Hu and Celia M. T. Greenwood and Joseph Beyene}, title = {Integrative analysis of multiple gene expression profiles with quality-adjusted effect size models}, journal = {{BMC} Bioinform.}, volume = {6}, pages = {128}, year = {2005} }
@article{DBLP:journals/bmcbi/HuangPGHCPMH05, author = {Xiaohong Huang and Wei Pan and Suzanne Grindle and Xinqiang Han and Yingjie Chen and Soon J. Park and Leslie W. Miller and Jennifer Hall}, title = {A comparative study of discriminating human heart failure etiology using gene expression profiles}, journal = {{BMC} Bioinform.}, volume = {6}, pages = {205}, year = {2005} }
@article{DBLP:journals/candc/KoXW05, author = {Daijin Ko and Wanyan Xu and Brad Windle}, title = {Gene function classification using {NCI-60} cell line gene expression profiles}, journal = {Comput. Biol. Chem.}, volume = {29}, number = {6}, pages = {412--419}, year = {2005} }
@article{DBLP:journals/ijait/KuramochiK05, author = {Michihiro Kuramochi and George Karypis}, title = {Gene Classification Using Expression Profiles: {A} Feasibility Study}, journal = {Int. J. Artif. Intell. Tools}, volume = {14}, number = {4}, pages = {641--660}, year = {2005} }
@article{DBLP:journals/ijait/YangWWY05, author = {Jiong Yang and Haixun Wang and Wei Wang and Philip S. Yu}, title = {An Improved Biclustering Method for Analyzing Gene Expression Profiles}, journal = {Int. J. Artif. Intell. Tools}, volume = {14}, number = {5}, pages = {771--790}, year = {2005} }
@article{DBLP:journals/ijmi/SacchiBLMCPZ05, author = {Lucia Sacchi and Riccardo Bellazzi and Cristiana Larizza and Paolo Magni and Tomaz Curk and Uros Petrovic and Blaz Zupan}, title = {TA-clustering: Cluster analysis of gene expression profiles through Temporal Abstractions}, journal = {Int. J. Medical Informatics}, volume = {74}, number = {7-8}, pages = {505--517}, year = {2005} }
@article{DBLP:journals/jcb/BerrarSBDD05, author = {Daniel P. Berrar and Brian Sturgeon and Ian Bradbury and C. Stephen Downes and Werner Dubitzky}, title = {Survival Trees for Analyzing Clinical Outcome in Lung Adenocarcinomas Based on Gene Expression Profiles: Identification of Neogenin and Diacylglycerol Kinase Expression as Critical Factors}, journal = {J. Comput. Biol.}, volume = {12}, number = {5}, pages = {534--544}, year = {2005} }
@article{DBLP:journals/jcisd/XuB05, author = {Yun Xu and Richard G. Brereton}, title = {Diagnostic Pattern Recognition on Gene-Expression Profile Data by Using One-Class Classification}, journal = {J. Chem. Inf. Model.}, volume = {45}, number = {5}, pages = {1392--1401}, year = {2005} }
@article{DBLP:journals/nar/AburataniGSTH05, author = {Sachiyo Aburatani and Kousuke Goto and Shigeru Saito and Hiroyuki Toh and Katsuhisa Horimoto}, title = {{ASIAN:} a web server for inferring a regulatory network framework from gene expression profiles}, journal = {Nucleic Acids Res.}, volume = {33}, number = {Web-Server-Issue}, pages = {659--664}, year = {2005} }
@article{DBLP:journals/nar/BoorsmaFVKB05, author = {Andr{\'{e}} Boorsma and Barrett C. Foat and Daniel J. Vis and Frans Klis and Harmen J. Bussemaker}, title = {T-profiler: scoring the activity of predefined groups of genes using gene expression data}, journal = {Nucleic Acids Res.}, volume = {33}, number = {Web-Server-Issue}, pages = {592--595}, year = {2005} }
@inproceedings{DBLP:conf/csb/Pascual-MontanoTCCP05, author = {Alberto D. Pascual{-}Montano and Francisco Tirado and Pedro Carmona{-}Saez and Jos{\'{e}} Mar{\'{\i}}a Carazo and Roberto D. Pascual{-}Marqui}, title = {Two-way clustering of gene expression profiles by sparse matrix factorization}, booktitle = {{CSB} Workshops}, pages = {103--104}, publisher = {{IEEE} Computer Society}, year = {2005} }
@inproceedings{DBLP:conf/eccb/VoglSSHWT05, author = {C. Vogl and F{\'{a}}tima S{\'{a}}nchez{-}Cabo and Gernot Stocker and Simon J. Hubbard and Olaf Wolkenhauer and Zlatko Trajanoski}, title = {A fully Bayesian model to cluster gene-expression profiles}, booktitle = {{ECCB/JBI}}, pages = {136}, year = {2005} }
@inproceedings{DBLP:conf/fskd/LvWZWWL05, author = {Sali Lv and Qianghu Wang and Guangmei Zhang and Fengxia Wen and Zhenzhen Wang and Xia Li}, title = {A New Method for Gene Functional Prediction Based on Homologous Expression Profile}, booktitle = {{FSKD} {(2)}}, series = {Lecture Notes in Computer Science}, volume = {3614}, pages = {836--844}, publisher = {Springer}, year = {2005} }
@inproceedings{DBLP:conf/icic/WangZB05, author = {Weiqiang Wang and Yanhong Zhou and Ran Bi}, title = {Correlating Genes and Functions to Human Disease by Systematic Differential Analysis of Expression Profiles}, booktitle = {{ICIC} {(2)}}, series = {Lecture Notes in Computer Science}, volume = {3645}, pages = {11--20}, publisher = {Springer}, year = {2005} }
@inproceedings{DBLP:conf/iicai/KapilGN05, author = {Ankur Kapil and Ravindra D. Gudi and Santosh B. Noronha}, title = {Projection and Fuzzy Classification Methods for Gene Expression Profile Analysis}, booktitle = {{IICAI}}, pages = {2212--2230}, publisher = {{IICAI}}, year = {2005} }
@inproceedings{DBLP:conf/isnn/WuLY05, author = {Shuanhu Wu and Alan Wee{-}Chung Liew and Hong Yan}, title = {OPTOC-Based Clustering Analysis of Gene Expression Profiles in Spectral Space}, booktitle = {{ISNN} {(3)}}, series = {Lecture Notes in Computer Science}, volume = {3498}, pages = {709--718}, publisher = {Springer}, year = {2005} }
@inproceedings{DBLP:conf/premi/ParkC05, author = {Han{-}Saem Park and Sung{-}Bae Cho}, title = {Evolutionary Clustering Algorithm with Knowledge-Based Evaluation for Fuzzy Cluster Analysis of Gene Expression Profiles}, booktitle = {PReMI}, series = {Lecture Notes in Computer Science}, volume = {3776}, pages = {640--644}, publisher = {Springer}, year = {2005} }
@article{DBLP:journals/bioinformatics/KyodaBOK04, author = {Koji Kyoda and Kotaro Baba and Shuichi Onami and Hiroaki Kitano}, title = {{DBRF-MEGN} method: an algorithm for deducing minimum equivalent gene networks from large-scale gene expression profiles of gene deletion mutants}, journal = {Bioinform.}, volume = {20}, number = {16}, pages = {2662--2675}, year = {2004} }
@article{DBLP:journals/bioinformatics/LuoKBYZ04, author = {Feng Luo and Latifur Khan and Farokh B. Bastani and I{-}Ling Yen and Jizhong Zhou}, title = {A dynamically growing self-organizing tree {(DGSOT)} for hierarchical clustering gene expression profiles}, journal = {Bioinform.}, volume = {20}, number = {16}, pages = {2605--2617}, year = {2004} }
@article{DBLP:journals/bioinformatics/SeseKMKM04, author = {Jun Sese and Yukinori Kurokawa and Morito Monden and Kikuya Kato and Shinichi Morishita}, title = {Constrained clusters of gene expression profiles with pathological features}, journal = {Bioinform.}, volume = {20}, number = {17}, pages = {3137--3145}, year = {2004} }
@article{DBLP:journals/bioinformatics/TangZR04, author = {Chun Tang and Aidong Zhang and Murali Ramanathan}, title = {{ESPD:} a pattern detection model underlying gene expression profiles}, journal = {Bioinform.}, volume = {20}, number = {6}, pages = {829--838}, year = {2004} }
@article{DBLP:journals/bmcbi/PellegrinoPSC04, author = {Maurizio Pellegrino and Paolo Provero and Lorenzo Silengo and Ferdinando Di Cunto}, title = {{CLOE:} Identification of putative functional relationships among genes by comparison of expression profiles between two species}, journal = {{BMC} Bioinform.}, volume = {5}, pages = {179}, year = {2004} }
@article{DBLP:journals/gpem/AndoI04, author = {Shin Ando and Hitoshi Iba}, title = {Classification of Gene Expression Profile Using Combinatory Method of Evolutionary Computation and Machine Learning}, journal = {Genet. Program. Evolvable Mach.}, volume = {5}, number = {2}, pages = {145--156}, year = {2004} }
@article{DBLP:journals/jbi/YipCNC04, author = {Kevin Y. Yip and David W. Cheung and Michael K. Ng and Kei{-}Hoi Cheung}, title = {Identifying projected clusters from gene expression profiles}, journal = {J. Biomed. Informatics}, volume = {37}, number = {5}, pages = {345--357}, year = {2004} }
@article{DBLP:journals/jcb/DejoriS04, author = {Math{\"{a}}us Dejori and Martin Stetter}, title = {Identifying Interventional and Pathogenic Mechanisms by Generative Inverse Modeling of Gene Expression Profiles}, journal = {J. Comput. Biol.}, volume = {11}, number = {6}, pages = {1135--1148}, year = {2004} }
@article{DBLP:journals/nar/KapusheskyKCDIKKTSVB04, author = {Misha Kapushesky and Patrick Kemmeren and Aed{\'{\i}}n C. Culhane and Steffen Durinck and Jan Ihmels and Christine K{\"{o}}rner and Meelis Kull and Aurora Torrente and Ugis Sarkans and Jaak Vilo and Alvis Brazma}, title = {Expression Profiler: next generation - an online platform for analysis of microarray data}, journal = {Nucleic Acids Res.}, volume = {32}, number = {Web-Server-Issue}, pages = {465--470}, year = {2004} }
@article{DBLP:journals/nar/VoliniaEFACG04, author = {Stefano Volinia and Rita Evangelisti and Francesca Francioso and Diego Arcelli and Massimo Carella and Paolo Gasparini}, title = {{GOAL:} automated Gene Ontology analysis of expression profiles}, journal = {Nucleic Acids Res.}, volume = {32}, number = {Web-Server-Issue}, pages = {492--499}, year = {2004} }
@article{DBLP:journals/pnas/LinCHSA04, author = {Kevin K. Lin and Darya Chudova and G. Wesley Hatfield and Padhraic Smyth and Bogi Andersen}, title = {Identification of hair cycle-associated genes from time-course gene expression profile data by using replicate variance}, journal = {Proc. Natl. Acad. Sci. {USA}}, volume = {101}, number = {45}, pages = {15955--15960}, year = {2004} }
@inproceedings{DBLP:conf/bibe/YipCNC04, author = {Kevin Y. Yip and David W. Cheung and Michael K. Ng and Kei{-}Hoi Cheung}, title = {Identifying Projected Clusters from Gene Expression Profiles}, booktitle = {{BIBE}}, pages = {259--266}, publisher = {{IEEE} Computer Society}, year = {2004} }
@inproceedings{DBLP:conf/cec/SpeerSZ04, author = {Nora Speer and Christian Spieth and Andreas Zell}, title = {A memetic co-clustering algorithm for gene expression profiles and biological annotation}, booktitle = {{IEEE} Congress on Evolutionary Computation}, pages = {1631--1638}, publisher = {{IEEE}}, year = {2004} }
@inproceedings{DBLP:conf/cibcb/Seker04, author = {Huseyin Seker}, title = {A multifuzzy filtering approach to reliable gene expression profile analysis}, booktitle = {{CIBCB}}, pages = {37--40}, publisher = {{IEEE}}, year = {2004} }
@inproceedings{DBLP:conf/csb/LiuWY04, author = {Jinze Liu and Wei Wang and Jiong Yang}, title = {Gene Ontology Friendly Biclustering of Expression Profiles}, booktitle = {{CSB}}, pages = {436--447}, publisher = {{IEEE} Computer Society}, year = {2004} }
@inproceedings{DBLP:conf/hicss/XueLS04, author = {Rui Xue and Jianying Li and Dennis J. Streveler}, title = {Microarray Gene Expression Profile Data Mining Model for Clinical Cancer Research}, booktitle = {{HICSS}}, publisher = {{IEEE} Computer Society}, year = {2004} }
@inproceedings{DBLP:conf/his/RazaGGC04, author = {Mansoor Raza and Iqbal Gondal and David G. Green and Ross L. Coppel}, title = {Feature Selection and Classification of Gene Expression Profile in Hereditary Breast Cancer}, booktitle = {{HIS}}, pages = {315--320}, publisher = {{IEEE} Computer Society}, year = {2004} }
@inproceedings{DBLP:conf/icarcv/Tseng04, author = {G. C. Tseng}, title = {A comparative review of gene clustering in expression profile}, booktitle = {{ICARCV}}, pages = {1320--1324}, publisher = {{IEEE}}, year = {2004} }
@inproceedings{DBLP:conf/kelsi/TanasaLT04, author = {Doru Tanasa and Jes{\'{u}}s A. L{\'{o}}pez and Brigitte Trousse}, title = {Extracting Sequential Patterns for Gene Regulatory Expressions Profiles}, booktitle = {{KELSI}}, series = {Lecture Notes in Computer Science}, volume = {3303}, pages = {46--57}, publisher = {Springer}, year = {2004} }
@inproceedings{DBLP:conf/kes/ShinP04, author = {Miyoung Shin and Seon Hee Park}, title = {Cluster Analysis of Gene Expression Profiles Using Automatically Extracted Seeds}, booktitle = {{KES}}, series = {Lecture Notes in Computer Science}, volume = {3215}, pages = {263--269}, publisher = {Springer}, year = {2004} }
@inproceedings{DBLP:conf/pricai/ParkYC04, author = {Han{-}Saem Park and Si{-}Ho Yoo and Sung{-}Bae Cho}, title = {A Fuzzy Clustering Algorithm for Analysis of Gene Expression Profiles}, booktitle = {{PRICAI}}, series = {Lecture Notes in Computer Science}, volume = {3157}, pages = {967--968}, publisher = {Springer}, year = {2004} }
@inproceedings{DBLP:conf/setn/PotamiasKM04, author = {George Potamias and Lefteris Koumakis and Vassilis Moustakis}, title = {Gene Selection via Discretized Gene-Expression Profiles and Greedy Feature-Elimination}, booktitle = {{SETN}}, series = {Lecture Notes in Computer Science}, volume = {3025}, pages = {256--266}, publisher = {Springer}, year = {2004} }
@inproceedings{DBLP:conf/snpd/GuoZRWYL04, author = {Zheng Guo and Tianwen Zhang and Shaoqi Rao and Qi Wang and Hui Yu and Xia Li}, title = {Classification of Cancer Types Based on Decision Tree Analysis of Gene Function Expression Profiles}, booktitle = {{SNPD}}, pages = {167--173}, publisher = {{IEEE} Computer Society}, year = {2004} }
@phdthesis{DBLP:phd/de/Ernst2003, author = {Jens Ernst}, title = {Similarity-based clustering algorithms for gene expression profiles}, school = {Technical University Munich}, year = {2003} }
@phdthesis{DBLP:phd/it/DiCamillo03, author = {Barbara Di Camillo}, title = {Modelling dynamic gene expression profiles}, school = {University of Padua, Italy}, year = {2003} }
@article{DBLP:journals/artmed/PetersonR03, author = {Carsten Peterson and Markus Ringn{\'{e}}r}, title = {Analyzing tumor gene expression profiles}, journal = {Artif. Intell. Medicine}, volume = {28}, number = {1}, pages = {59--74}, year = {2003} }
@article{DBLP:journals/bioinformatics/EichlerHI03, author = {Gabriel S. Eichler and Sui Huang and Donald E. Ingber}, title = {Gene Expression Dynamics Inspector {(GEDI):} for integrative analysis of expression profiles}, journal = {Bioinform.}, volume = {19}, number = {17}, pages = {2321--2322}, year = {2003} }
@article{DBLP:journals/bioinformatics/HvidstenLK03, author = {Torgeir R. Hvidsten and Astrid L{\ae}greid and Henryk Jan Komorowski}, title = {Learning Rule-based Models of Biological Process from Gene Expression Time Profiles Using Gene Ontology}, journal = {Bioinform.}, volume = {19}, number = {9}, pages = {1116--1123}, year = {2003} }
@article{DBLP:journals/bioinformatics/LiFX03, author = {Wuju Li and Ming Fan and Momiao Xiong}, title = {SamCluster: An Integrated Scheme for Automatic Discovery of Sample Classes Using Gene Expression Profile}, journal = {Bioinform.}, volume = {19}, number = {7}, pages = {811--817}, year = {2003} }
@article{DBLP:journals/bioinformatics/LiLDYW03, author = {Jinyan Li and Huiqing Liu and James R. Downing and Allen Eng{-}Juh Yeoh and Limsoon Wong}, title = {Simple rules underlying gene expression profiles of more than six subtypes of acute lymphoblastic leukemia {(ALL)} patients}, journal = {Bioinform.}, volume = {19}, number = {1}, pages = {71--78}, year = {2003} }
@article{DBLP:journals/bioinformatics/LiuM03, author = {Xueli Liu and Hans{-}Georg M{\"{u}}ller}, title = {Modes and clustering for time-warped gene expression profile data}, journal = {Bioinform.}, volume = {19}, number = {15}, pages = {1937--1944}, year = {2003} }
@article{DBLP:journals/bioinformatics/ObaSTMMI03, author = {Shigeyuki Oba and Masa{-}aki Sato and Ichiro Takemasa and Morito Monden and Ken{-}ichi Matsubara and Shin Ishii}, title = {A Bayesian missing value estimation method for gene expression profile data}, journal = {Bioinform.}, volume = {19}, number = {16}, pages = {2088--2096}, year = {2003} }
@article{DBLP:journals/cmpb/Peterson03, author = {Leif E. Peterson}, title = {Partitioning large-sample microarray-based gene expression profiles using principal components analysis}, journal = {Comput. Methods Programs Biomed.}, volume = {70}, number = {2}, pages = {107--119}, year = {2003} }
@article{DBLP:journals/ijseke/ChoW03, author = {Sung{-}Bae Cho and Hong{-}Hee Won}, title = {Data Mining For Gene Expression Profiles From Dna Microarray}, journal = {Int. J. Softw. Eng. Knowl. Eng.}, volume = {13}, number = {6}, pages = {593--608}, year = {2003} }
@article{DBLP:journals/jcb/RadmacherMS03, author = {Michael D. Radmacher and Lisa M. McShane and Richard M. Simon}, title = {A Paradigm for Class Prediction Using Gene Expression Profiles}, journal = {J. Comput. Biol.}, volume = {9}, number = {3}, pages = {505--511}, year = {2003} }
@article{DBLP:journals/jise/HuangC03a, author = {Ing{-}Jer Huang and Dao{-}Zhen Chen}, title = {Mining Correlations of Human Gene Expression from Digital Gene Expression Profiles}, journal = {J. Inf. Sci. Eng.}, volume = {19}, number = {6}, pages = {909--921}, year = {2003} }
@article{DBLP:journals/nn/RessomWN03, author = {Habtom W. Ressom and Dali Wang and Padma Natarajan}, title = {Adaptive double self-organizing maps for clustering gene expression profiles}, journal = {Neural Networks}, volume = {16}, number = {5-6}, pages = {633--640}, year = {2003} }
@inproceedings{DBLP:conf/cikm/TangZ03, author = {Chun Tang and Aidong Zhang}, title = {Mining multiple phenotype structures underlying gene expression profiles}, booktitle = {{CIKM}}, pages = {418--425}, publisher = {{ACM}}, year = {2003} }
@inproceedings{DBLP:conf/csb/DuanLSD03, author = {Zhong{-}Hui Duan and Louis S. Liou and Ting Shi and Joseph A. DiDonato}, title = {Application of Singular Value Decomposition and Functional Clustering to Analyzing Gene Expression Profiles of Renal Cell Carcinoma}, booktitle = {{CSB}}, pages = {392--393}, publisher = {{IEEE} Computer Society}, year = {2003} }
@inproceedings{DBLP:conf/csb/Syeda-Mahmood03, author = {Tanveer Fathima Syeda{-}Mahmood}, title = {Clustering Time-Varying Gene Expression Profiles using Scale-space Signals}, booktitle = {{CSB}}, pages = {48--56}, publisher = {{IEEE} Computer Society}, year = {2003} }
@inproceedings{DBLP:conf/kdd/YipCN03, author = {Kevin Y. Yip and David W. Cheung and Michael K. Ng}, title = {A highly-usable projected clustering algorithm for gene expression profiles}, booktitle = {{BIOKDD}}, pages = {41--48}, year = {2003} }
@inproceedings{DBLP:conf/psb/LiL03, author = {Hongzhe Li and Yihui Luan}, title = {Kernel Cox Regression Models for Linking Gene Expression Profiles to Censored Survival Data}, booktitle = {Pacific Symposium on Biocomputing}, pages = {65--76}, year = {2003} }
@article{DBLP:journals/bib/Wu02, author = {Thomas D. Wu}, title = {Large-scale analysis of gene expression profiles}, journal = {Briefings Bioinform.}, volume = {3}, number = {1}, pages = {7--17}, year = {2002} }
@article{DBLP:journals/bioinformatics/DodsonCSP02, author = {J. M. Dodson and P. T. Charles and David A. Stenger and Joseph J. Pancrazio}, title = {Quantitative assessment of filter-based cDNA microarrays: gene expression profiles of human T-lymphoma cell lines}, journal = {Bioinform.}, volume = {18}, number = {7}, pages = {953--960}, year = {2002} }
@article{DBLP:journals/bioinformatics/LiW02, author = {Jinyan Li and Limsoon Wong}, title = {Identifying good diagnostic gene groups from gene expression profiles using the concept of emerging patterns}, journal = {Bioinform.}, volume = {18}, number = {5}, pages = {725--734}, year = {2002} }
@article{DBLP:journals/bioinformatics/LiW02a, author = {Jinyan Li and Limsoon Wong}, title = {Identifying good diagnostic gene groups from gene expression profiles using the concept of emerging patterns}, journal = {Bioinform.}, volume = {18}, number = {10}, pages = {1406--1407}, year = {2002} }
@article{DBLP:journals/bioinformatics/MedvedovicS02, author = {Mario Medvedovic and Siva Sivaganesan}, title = {Bayesian infinite mixture model based clustering of gene expression profiles}, journal = {Bioinform.}, volume = {18}, number = {9}, pages = {1194--1206}, year = {2002} }
@article{DBLP:journals/bioinformatics/NguyenR02a, author = {Danh V. Nguyen and David M. Rocke}, title = {Multi-class cancer classification via partial least squares with gene expression profiles}, journal = {Bioinform.}, volume = {18}, number = {9}, pages = {1216--1226}, year = {2002} }
@article{DBLP:journals/bioinformatics/ParkBK02, author = {Peter J. Park and Atul J. Butte and Isaac S. Kohane}, title = {Comparing expression profiles of genes with similar promoter regions}, journal = {Bioinform.}, volume = {18}, number = {12}, pages = {1576--1584}, year = {2002} }
@article{DBLP:journals/bioinformatics/SmetMMTMM02, author = {Frank De Smet and Janick Mathys and Kathleen Marchal and Gert Thijs and Bart De Moor and Yves Moreau}, title = {Adaptive quality-based clustering of gene expression profiles}, journal = {Bioinform.}, volume = {18}, number = {5}, pages = {735--746}, year = {2002} }
@article{DBLP:journals/bioinformatics/WujuM02, author = {Wuju Li and Momiao Xiong}, title = {Tclass: tumor classification system based on gene expression profile}, journal = {Bioinform.}, volume = {18}, number = {2}, pages = {325--326}, year = {2002} }
@article{DBLP:journals/ijprai/Cho02, author = {Sung{-}Bae Cho}, title = {Exploring Features and Classifiers to Classify Gene Expression Profiles of Acute Leukemia}, journal = {Int. J. Pattern Recognit. Artif. Intell.}, volume = {16}, number = {7}, pages = {831--844}, year = {2002} }
@article{DBLP:journals/isb/SpangBZMNW02, author = {Rainer Spang and Carrie Blanchette and Harry Zuzan and Jeffrey R. Marks and Joseph Nevins and Mike West}, title = {Prediction and uncertainty in the analysis of gene expression profiles}, journal = {Silico Biol.}, volume = {2}, number = {3}, pages = {369--381}, year = {2002} }
@article{DBLP:journals/isci/WangG02, author = {Yufeng Wang and Xun Gu}, title = {Evolutionary and expression profiles of gene families crucial for central nervous system development}, journal = {Inf. Sci.}, volume = {145}, number = {3-4}, pages = {215--223}, year = {2002} }
@inproceedings{DBLP:conf/jcis/WangG02, author = {Yufeng Wang and Xun Gu}, title = {Evolutionary Analysis for Developmental Profiles of Gene Family Expression in Central Nervous System}, booktitle = {{JCIS}}, pages = {1231--1236}, publisher = {{JCIS} / Association for Intelligent Machinery, Inc.}, year = {2002} }
@inproceedings{DBLP:conf/ppsn/MerzZ02, author = {Peter Merz and Andreas Zell}, title = {Clustering Gene Expression Profiles with Memetic Algorithms}, booktitle = {{PPSN}}, series = {Lecture Notes in Computer Science}, volume = {2439}, pages = {811--820}, publisher = {Springer}, year = {2002} }
@inproceedings{DBLP:conf/recomb/Ding02, author = {Chris H. Q. Ding}, title = {Analysis of gene expression profiles: class discovery and leaf ordering}, booktitle = {{RECOMB}}, pages = {127--136}, publisher = {{ACM}}, year = {2002} }
@article{DBLP:journals/bioinformatics/HorimotoT01, author = {Katsuhisa Horimoto and Hiroyuki Toh}, title = {Statistical estimation of cluster boundaries in gene expression profile data}, journal = {Bioinform.}, volume = {17}, number = {12}, pages = {1143--1151}, year = {2001} }
@article{DBLP:journals/bioinformatics/LukashinF01, author = {Alexander V. Lukashin and Rainer Fuchs}, title = {Analysis of temporal gene expression profiles: clustering by simulated annealing and determining the optimal number of clusters}, journal = {Bioinform.}, volume = {17}, number = {5}, pages = {405--414}, year = {2001} }
@inproceedings{DBLP:conf/bibe/KuramochiK01, author = {Michihiro Kuramochi and George Karypis}, title = {Gene Classification using Expression Profiles: {A} Feasibility Study}, booktitle = {{BIBE}}, pages = {191--200}, publisher = {{IEEE} Computer Society}, year = {2001} }
@inproceedings{DBLP:conf/gcb/SpangBZMNW01, author = {Rainer Spang and Carrie Blanchette and Harry Zuzan and Jeffrey R. Marks and Joseph Nevins and Mike West}, title = {Prediction and uncertainty in the analysis of gene expression profiles}, booktitle = {German Conference on Bioinformatics}, pages = {102--111}, publisher = {German Research Center for Biotechnology}, year = {2001} }
@inproceedings{DBLP:conf/ismb/ChiangBE01, author = {Derek Y. Chiang and Patrick O. Brown and Michael B. Eisen}, title = {Visualizing associations between genome sequences and gene expression data using genome-mean expression profiles}, booktitle = {{ISMB} (Supplement of Bioinformatics)}, pages = {49--55}, year = {2001} }
@inproceedings{DBLP:conf/kdd/PavlidisTN01, author = {Paul Pavlidis and Christopher Tang and William Stafford Noble}, title = {Classification of genes using probabilistic models of microarray expression profiles}, booktitle = {{BIOKDD}}, pages = {15--21}, year = {2001} }
@article{DBLP:journals/jcb/Ben-DorBFNSY00, author = {Amir Ben{-}Dor and Laurakay Bruhn and Nir Friedman and Iftach Nachman and Mich{\`{e}}l Schummer and Zohar Yakhini}, title = {Tissue Classification with Gene Expression Profiles}, journal = {J. Comput. Biol.}, volume = {7}, number = {3-4}, pages = {559--583}, year = {2000} }
@inproceedings{DBLP:conf/recomb/Ben-DorBFNSY00, author = {Amir Ben{-}Dor and Laurakay Bruhn and Nir Friedman and Iftach Nachman and Mich{\`{e}}l Schummer and Zohar Yakhini}, title = {Tissue classification with gene expression profiles}, booktitle = {{RECOMB}}, pages = {54--64}, publisher = {{ACM}}, year = {2000} }
@inproceedings{DBLP:conf/gcb/FellenbergM99, author = {Matthias Fellenberg and Hans{-}Werner Mewes}, title = {Interpreting Clusters of Gene Expression Profiles in Terms of Metabolic Pathways}, booktitle = {German Conference on Bioinformatics}, pages = {185--187}, year = {1999} }
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