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@article{DBLP:journals/bioinformatics/GuoFBV23,
author = {Dan Guo and
Melanie Christine F{\"{o}}ll and
Kylie A. Bemis and
Olga Vitek},
title = {A noise-robust deep clustering of biomolecular ions improves interpretability
of mass spectrometric images},
journal = {Bioinform.},
volume = {39},
number = {2},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad067},
doi = {10.1093/BIOINFORMATICS/BTAD067},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuoFBV23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TaheriTKRSHZV23,
author = {Sara Mohammad Taheri and
Vartika Tewari and
Rohan Kapre and
Ehsan Rahiminasab and
Karen Sachs and
Charles Tapley Hoyt and
Jeremy Zucker and
Olga Vitek},
title = {Optimal adjustment sets for causal query estimation in partially observed
biomolecular networks},
journal = {Bioinform.},
volume = {39},
number = {Supplement-1},
pages = {494--503},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad270},
doi = {10.1093/BIOINFORMATICS/BTAD270},
timestamp = {Wed, 31 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TaheriTKRSHZV23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cgf/SouthSVDB22,
author = {Laura South and
David Saffo and
Olga Vitek and
Cody Dunne and
Michelle A. Borkin},
title = {Effective Use of Likert Scales in Visualization Evaluations: {A} Systematic
Review},
journal = {Comput. Graph. Forum},
volume = {41},
number = {3},
pages = {43--55},
year = {2022},
url = {https://doi.org/10.1111/cgf.14521},
doi = {10.1111/CGF.14521},
timestamp = {Sat, 10 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cgf/SouthSVDB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tbd/ZuckerPTBKBTHON21,
author = {Jeremy Zucker and
Kaushal Paneri and
Sara Mohammad Taheri and
Somya Bhargava and
Pallavi Kolambkar and
Craig Bakker and
Jeremy Teuton and
Charles Tapley Hoyt and
Kristie L. Oxford and
Robert Osazuwa Ness and
Olga Vitek},
title = {Leveraging Structured Biological Knowledge for Counterfactual Inference:
{A} Case Study of Viral Pathogenesis},
journal = {{IEEE} Trans. Big Data},
volume = {7},
number = {1},
pages = {25--37},
year = {2021},
url = {https://doi.org/10.1109/TBDATA.2021.3050680},
doi = {10.1109/TBDATA.2021.3050680},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tbd/ZuckerPTBKBTHON21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2101-05136,
author = {Jeremy Zucker and
Kaushal Paneri and
Sara Mohammad Taheri and
Somya Bhargava and
Pallavi Kolambkar and
Craig Bakker and
Jeremy Teuton and
Charles Tapley Hoyt and
Kristie L. Oxford and
Robert Osazuwa Ness and
Olga Vitek},
title = {Leveraging Structured Biological Knowledge for Counterfactual Inference:
a Case Study of Viral Pathogenesis},
journal = {CoRR},
volume = {abs/2101.05136},
year = {2021},
url = {https://arxiv.org/abs/2101.05136},
eprinttype = {arXiv},
eprint = {2101.05136},
timestamp = {Fri, 19 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2101-05136.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2102-06626,
author = {Sara Mohammad Taheri and
Robert Osazuwa Ness and
Jeremy Zucker and
Olga Vitek},
title = {Do-calculus enables causal reasoning with latent variable models},
journal = {CoRR},
volume = {abs/2102.06626},
year = {2021},
url = {https://arxiv.org/abs/2102.06626},
eprinttype = {arXiv},
eprint = {2102.06626},
timestamp = {Thu, 18 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2102-06626.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuoFVEBSV20,
author = {Dan Guo and
Melanie Christine F{\"{o}}ll and
Veronika Volkmann and
Kathrin Enderle{-}Ammour and
Peter Bronsert and
Oliver Schilling and
Olga Vitek},
title = {Deep multiple instance learning classifies subtissue locations in
mass spectrometry images from tissue-level annotations},
journal = {Bioinform.},
volume = {36},
number = {Supplement-1},
pages = {i300--i308},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btaa436},
doi = {10.1093/BIOINFORMATICS/BTAA436},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuoFVEBSV20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2002-00511,
author = {Sara Mohammad Taheri and
Omkar Terse and
Eralp Dogu and
Magy Seif El{-}Nasr and
Olga Vitek},
title = {Investigating usability of MSstatsQC software},
journal = {CoRR},
volume = {abs/2002.00511},
year = {2020},
url = {https://arxiv.org/abs/2002.00511},
eprinttype = {arXiv},
eprint = {2002.00511},
timestamp = {Mon, 10 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2002-00511.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuoBRAV19,
author = {Dan Guo and
Kylie A. Bemis and
Catherine Rawlins and
Jeffrey N. Agar and
Olga Vitek},
title = {Unsupervised segmentation of mass spectrometric ion images characterizes
morphology of tissues},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i208--i217},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz345},
doi = {10.1093/BIOINFORMATICS/BTZ345},
timestamp = {Wed, 28 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuoBRAV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/toplas/BergerHMVV19,
author = {Emery D. Berger and
Celeste Hollenbeck and
Petr Maj and
Olga Vitek and
Jan Vitek},
title = {On the Impact of Programming Languages on Code Quality: {A} Reproduction
Study},
journal = {{ACM} Trans. Program. Lang. Syst.},
volume = {41},
number = {4},
pages = {21:1--21:24},
year = {2019},
url = {https://doi.org/10.1145/3340571},
doi = {10.1145/3340571},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/toplas/BergerHMVV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/chi/SchwabHVT0B19,
author = {Michail Schwab and
Sicheng Hao and
Olga Vitek and
James Tompkin and
Jeff Huang and
Michelle A. Borkin},
editor = {Stephen A. Brewster and
Geraldine Fitzpatrick and
Anna L. Cox and
Vassilis Kostakos},
title = {Evaluating Pan and Zoom Timelines and Sliders},
booktitle = {Proceedings of the 2019 {CHI} Conference on Human Factors in Computing
Systems, {CHI} 2019, Glasgow, Scotland, UK, May 04-09, 2019},
pages = {556},
publisher = {{ACM}},
year = {2019},
url = {https://doi.org/10.1145/3290605.3300786},
doi = {10.1145/3290605.3300786},
timestamp = {Tue, 15 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/chi/SchwabHVT0B19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/NessPV19,
author = {Robert Osazuwa Ness and
Kaushal Paneri and
Olga Vitek},
editor = {Hanna M. Wallach and
Hugo Larochelle and
Alina Beygelzimer and
Florence d'Alch{\'{e}}{-}Buc and
Emily B. Fox and
Roman Garnett},
title = {Integrating Markov processes with structural causal modeling enables
counterfactual inference in complex systems},
booktitle = {Advances in Neural Information Processing Systems 32: Annual Conference
on Neural Information Processing Systems 2019, NeurIPS 2019, December
8-14, 2019, Vancouver, BC, Canada},
pages = {14211--14221},
year = {2019},
url = {https://proceedings.neurips.cc/paper/2019/hash/2d44e06a7038f2dd98f0f54c4be35e22-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/NessPV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1901-10220,
author = {Emery D. Berger and
Celeste Hollenbeck and
Petr Maj and
Olga Vitek and
Jan Vitek},
title = {On the Impact of Programming Languages on Code Quality},
journal = {CoRR},
volume = {abs/1901.10220},
year = {2019},
url = {http://arxiv.org/abs/1901.10220},
eprinttype = {arXiv},
eprint = {1901.10220},
timestamp = {Sat, 02 Feb 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1901-10220.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1911-02175,
author = {Robert Osazuwa Ness and
Kaushal Paneri and
Olga Vitek},
title = {Integrating Markov processes with structural causal modeling enables
counterfactual inference in complex systems},
journal = {CoRR},
volume = {abs/1911.02175},
year = {2019},
url = {http://arxiv.org/abs/1911.02175},
eprinttype = {arXiv},
eprint = {1911.02175},
timestamp = {Mon, 11 Nov 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1911-02175.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1911-11894,
author = {Emery D. Berger and
Petr Maj and
Olga Vitek and
Jan Vitek},
title = {{FSE/CACM} Rebuttal\({}^{\mbox{2}}\): Correcting {A} Large-Scale Study
of Programming Languages and Code Quality in GitHub},
journal = {CoRR},
volume = {abs/1911.11894},
year = {2019},
url = {http://arxiv.org/abs/1911.11894},
eprinttype = {arXiv},
eprint = {1911.11894},
timestamp = {Tue, 03 Dec 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1911-11894.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/NessSMV18,
author = {Robert Osazuwa Ness and
Karen Sachs and
Parag Mallick and
Olga Vitek},
title = {A Bayesian Active Learning Experimental Design for Inferring Signaling
Networks},
journal = {J. Comput. Biol.},
volume = {25},
number = {7},
pages = {709--725},
year = {2018},
url = {https://doi.org/10.1089/cmb.2017.0247},
doi = {10.1089/CMB.2017.0247},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/NessSMV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GalitzineBCV18,
author = {Cyril Galitzine and
Pierre M. Jean Beltran and
Ileana M. Cristea and
Olga Vitek},
editor = {Benjamin J. Raphael},
title = {Statistical Inference of Peroxisome Dynamics},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {54--74},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-89929-9\_4},
doi = {10.1007/978-3-319-89929-9\_4},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GalitzineBCV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BemisV17,
author = {Kylie A. Bemis and
Olga Vitek},
title = {matter: an {R} package for rapid prototyping with larger-than-memory
datasets on disk},
journal = {Bioinform.},
volume = {33},
number = {19},
pages = {3142--3144},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx392},
doi = {10.1093/BIOINFORMATICS/BTX392},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BemisV17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/NessSMV17,
author = {Robert Osazuwa Ness and
Karen Sachs and
Parag Mallick and
Olga Vitek},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {A Bayesian Active Learning Experimental Design for Inferring Signaling
Networks},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {134--156},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-56970-3\_9},
doi = {10.1007/978-3-319-56970-3\_9},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/NessSMV17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BemisHEFVMSV15,
author = {Kyle D. Bemis and
April Harry and
Livia S. Eberlin and
Christina Ferreira and
Stephanie M. van de Ven and
Parag Mallick and
Mark L. Stolowitz and
Olga Vitek},
title = {\emph{Cardinal}: an {R} package for statistical analysis of mass spectrometry-based
imaging experiments},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2418--2420},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv146},
doi = {10.1093/BIOINFORMATICS/BTV146},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BemisHEFVMSV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PalmerOTLGDVPBA15,
author = {Andrew Palmer and
Ekaterina Ovchinnikova and
Mikael Thun{\'{e}} and
R{\'{e}}gis Lavigne and
Blandine Gu{\'{e}}vel and
Andrey Dyatlov and
Olga Vitek and
Charles Pineau and
Mats Bor{\'{e}}n and
Theodore Alexandrov},
title = {Using collective expert judgements to evaluate quality measures of
mass spectrometry images},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {375--384},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv266},
doi = {10.1093/BIOINFORMATICS/BTV266},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PalmerOTLGDVPBA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChengLCRAV15,
author = {Lin{-}Yang Cheng and
Yansheng Liu and
Ching{-}Yun Chang and
Hannes L. R{\"{o}}st and
Ruedi Aebersold and
Olga Vitek},
title = {Statistical elimination of spectral features with large between-run
variation enhances quantitative protein-level conclusions in experiments
with data-independent spectral acquisition},
journal = {{BMC} Bioinform.},
volume = {16},
number = {{S-2}},
pages = {A4},
year = {2015},
url = {https://doi.org/10.1186/1471-2105-16-S2-A4},
doi = {10.1186/1471-2105-16-S2-A4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChengLCRAV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dagstuhl-reports/AebersoldKV15,
author = {Rudolf Aebersold and
Oliver Kohlbacher and
Olga Vitek},
title = {Computational Mass Spectrometry (Dagstuhl Seminar 15351)},
journal = {Dagstuhl Reports},
volume = {5},
number = {8},
pages = {9--33},
year = {2015},
url = {https://doi.org/10.4230/DagRep.5.8.9},
doi = {10.4230/DAGREP.5.8.9},
timestamp = {Wed, 07 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/dagstuhl-reports/AebersoldKV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BroudyKCSMAMASSTBSGCVMM14,
author = {Daniel Broudy and
Trevor Killeen and
Meena Choi and
Nicholas Shulman and
Deepak R. Mani and
Susan E. Abbatiello and
Deepak Mani and
Rushdy Ahmad and
Alexandria K. Sahu and
Birgit Schilling and
Kaipo Tamura and
Yuval Boss and
Vagisha Sharma and
Bradford W. Gibson and
Steven A. Carr and
Olga Vitek and
Michael J. MacCoss and
Brendan MacLean},
title = {A framework for installable external tools in Skyline},
journal = {Bioinform.},
volume = {30},
number = {17},
pages = {2521--2523},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu148},
doi = {10.1093/BIOINFORMATICS/BTU148},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BroudyKCSMAMASSTBSGCVMM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChoiCCBKMV14,
author = {Meena Choi and
Ching{-}Yun Chang and
Timothy Clough and
Daniel Broudy and
Trevor Killeen and
Brendan MacLean and
Olga Vitek},
title = {MSstats: an {R} package for statistical analysis of quantitative mass
spectrometry-based proteomic experiments},
journal = {Bioinform.},
volume = {30},
number = {17},
pages = {2524--2526},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu305},
doi = {10.1093/BIOINFORMATICS/BTU305},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChoiCCBKMV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuHV13,
author = {Danni Yu and
Wolfgang Huber and
Olga Vitek},
title = {Shrinkage estimation of dispersion in Negative Binomial models for
RNA-seq experiments with small sample size},
journal = {Bioinform.},
volume = {29},
number = {10},
pages = {1275--1282},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt143},
doi = {10.1093/BIOINFORMATICS/BTT143},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuHV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/Vitek13,
author = {Olga Vitek},
title = {Leading a Statistical Bioinformatics Lab: It's All About Finding Balance},
journal = {PLoS Comput. Biol.},
volume = {9},
number = {11},
year = {2013},
url = {https://doi.org/10.1371/journal.pcbi.1003333},
doi = {10.1371/JOURNAL.PCBI.1003333},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/Vitek13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dagstuhl-reports/AebersoldKV13,
author = {Ruedi Aebersold and
Oliver Kohlbacher and
Olga Vitek},
title = {Computational Mass Spectrometry (Dagstuhl Seminar 13491)},
journal = {Dagstuhl Reports},
volume = {3},
number = {12},
pages = {1--16},
year = {2013},
url = {https://doi.org/10.4230/DagRep.3.12.1},
doi = {10.4230/DAGREP.3.12.1},
timestamp = {Wed, 07 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/dagstuhl-reports/AebersoldKV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BemisEFCV12,
author = {Kyle D. Bemis and
Livia Eberlin and
Christina Ferreira and
R. Cooks and
Olga Vitek},
title = {Spatial segmentation and feature selection for desi imaging mass spectrometry
data with spatially-aware sparse clustering},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-18}},
pages = {A8},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S18-A8},
doi = {10.1186/1471-2105-13-S18-A8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BemisEFCV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CloughTRAV12,
author = {Timothy Clough and
Safia Thaminy and
Susanne Ragg and
Ruedi Aebersold and
Olga Vitek},
title = {Statistical protein quantification and significance analysis in label-free
{LC-MS} experiments with complex designs},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-16}},
pages = {S6},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S16-S6},
doi = {10.1186/1471-2105-13-S16-S6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CloughTRAV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MaVN12,
author = {Kelvin Ma and
Olga Vitek and
Alexey I. Nesvizhskii},
title = {A statistical model-building perspective to identification of {MS/MS}
spectra with PeptideProphet},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-16}},
pages = {S1},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S16-S1},
doi = {10.1186/1471-2105-13-S16-S1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MaVN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuDBKVSV11,
author = {Danni Yu and
John Danku and
Ivan Baxter and
Sungjin Kim and
Olena K. Vatamaniuk and
David E. Salt and
Olga Vitek},
title = {Noise reduction in genome-wide perturbation screens using linear mixed-effect
models},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2173--2180},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr359},
doi = {10.1093/BIOINFORMATICS/BTR359},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuDBKVSV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhengZRRV11,
author = {Cheng Zheng and
Shucha Zhang and
Susanne Ragg and
Daniel Raftery and
Olga Vitek},
title = {Identification and quantification of metabolites in \({}^{\mbox{1}}\)H
{NMR} spectra by Bayesian model selection},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1637--1644},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr118},
doi = {10.1093/BIOINFORMATICS/BTR118},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhengZRRV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/KallV11,
author = {Lukas K{\"{a}}ll and
Olga Vitek},
title = {Computational Mass Spectrometry-Based Proteomics},
journal = {PLoS Comput. Biol.},
volume = {7},
number = {12},
year = {2011},
url = {https://doi.org/10.1371/journal.pcbi.1002277},
doi = {10.1371/JOURNAL.PCBI.1002277},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/KallV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/Vitek09,
author = {Olga Vitek},
title = {Getting Started in Computational Mass Spectrometry-Based Proteomics},
journal = {PLoS Comput. Biol.},
volume = {5},
number = {5},
year = {2009},
url = {https://doi.org/10.1371/journal.pcbi.1000366},
doi = {10.1371/JOURNAL.PCBI.1000366},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/Vitek09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BrusniakBCCEGLLMSVZAW08,
author = {Mi{-}Youn K. Brusniak and
Bernd Bodenmiller and
David S. Campbell and
Kelly Cooke and
James Eddes and
Andrew Garbutt and
Hollis Lau and
Simon Letarte and
Lukas N. Mueller and
Vagisha Sharma and
Olga Vitek and
Ning Zhang and
Ruedi Aebersold and
Julian D. Watts},
title = {Corra: Computational framework and tools for {LC-MS} discovery and
targeted mass spectrometry-based proteomics},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-542},
doi = {10.1186/1471-2105-9-542},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BrusniakBCCEGLLMSVZAW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccb/VitekBCKV05,
author = {Olga Vitek and
Chris Bailey{-}Kellogg and
Bruce A. Craig and
Paul Kuliniewicz and
Jan Vitek},
title = {Reconsidering complete search algorithms for protein backbone {NMR}
assignment},
booktitle = {ECCB/JBI'05 Proceedings, Fourth European Conference on Computational
Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas
de BioInform{\'{a}}tica), Palacio de Congresos, Madrid, Spain,
September 28 - October 1, 2005},
pages = {236},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti1138},
doi = {10.1093/BIOINFORMATICS/BTI1138},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eccb/VitekBCKV05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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