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export results for "Olga Vitek"
@article{DBLP:journals/bioinformatics/GuoFBV23, author = {Dan Guo and Melanie Christine F{\"{o}}ll and Kylie A. Bemis and Olga Vitek}, title = {A noise-robust deep clustering of biomolecular ions improves interpretability of mass spectrometric images}, journal = {Bioinform.}, volume = {39}, number = {2}, year = {2023} }
@article{DBLP:journals/bioinformatics/TaheriTKRSHZV23, author = {Sara Mohammad Taheri and Vartika Tewari and Rohan Kapre and Ehsan Rahiminasab and Karen Sachs and Charles Tapley Hoyt and Jeremy Zucker and Olga Vitek}, title = {Optimal adjustment sets for causal query estimation in partially observed biomolecular networks}, journal = {Bioinform.}, volume = {39}, number = {Supplement-1}, pages = {494--503}, year = {2023} }
@article{DBLP:journals/cgf/SouthSVDB22, author = {Laura South and David Saffo and Olga Vitek and Cody Dunne and Michelle A. Borkin}, title = {Effective Use of Likert Scales in Visualization Evaluations: {A} Systematic Review}, journal = {Comput. Graph. Forum}, volume = {41}, number = {3}, pages = {43--55}, year = {2022} }
@article{DBLP:journals/tbd/ZuckerPTBKBTHON21, author = {Jeremy Zucker and Kaushal Paneri and Sara Mohammad Taheri and Somya Bhargava and Pallavi Kolambkar and Craig Bakker and Jeremy Teuton and Charles Tapley Hoyt and Kristie L. Oxford and Robert Osazuwa Ness and Olga Vitek}, title = {Leveraging Structured Biological Knowledge for Counterfactual Inference: {A} Case Study of Viral Pathogenesis}, journal = {{IEEE} Trans. Big Data}, volume = {7}, number = {1}, pages = {25--37}, year = {2021} }
@article{DBLP:journals/corr/abs-2101-05136, author = {Jeremy Zucker and Kaushal Paneri and Sara Mohammad Taheri and Somya Bhargava and Pallavi Kolambkar and Craig Bakker and Jeremy Teuton and Charles Tapley Hoyt and Kristie L. Oxford and Robert Osazuwa Ness and Olga Vitek}, title = {Leveraging Structured Biological Knowledge for Counterfactual Inference: a Case Study of Viral Pathogenesis}, journal = {CoRR}, volume = {abs/2101.05136}, year = {2021} }
@article{DBLP:journals/corr/abs-2102-06626, author = {Sara Mohammad Taheri and Robert Osazuwa Ness and Jeremy Zucker and Olga Vitek}, title = {Do-calculus enables causal reasoning with latent variable models}, journal = {CoRR}, volume = {abs/2102.06626}, year = {2021} }
@article{DBLP:journals/bioinformatics/GuoFVEBSV20, author = {Dan Guo and Melanie Christine F{\"{o}}ll and Veronika Volkmann and Kathrin Enderle{-}Ammour and Peter Bronsert and Oliver Schilling and Olga Vitek}, title = {Deep multiple instance learning classifies subtissue locations in mass spectrometry images from tissue-level annotations}, journal = {Bioinform.}, volume = {36}, number = {Supplement-1}, pages = {i300--i308}, year = {2020} }
@article{DBLP:journals/corr/abs-2002-00511, author = {Sara Mohammad Taheri and Omkar Terse and Eralp Dogu and Magy Seif El{-}Nasr and Olga Vitek}, title = {Investigating usability of MSstatsQC software}, journal = {CoRR}, volume = {abs/2002.00511}, year = {2020} }
@article{DBLP:journals/bioinformatics/GuoBRAV19, author = {Dan Guo and Kylie A. Bemis and Catherine Rawlins and Jeffrey N. Agar and Olga Vitek}, title = {Unsupervised segmentation of mass spectrometric ion images characterizes morphology of tissues}, journal = {Bioinform.}, volume = {35}, number = {14}, pages = {i208--i217}, year = {2019} }
@article{DBLP:journals/toplas/BergerHMVV19, author = {Emery D. Berger and Celeste Hollenbeck and Petr Maj and Olga Vitek and Jan Vitek}, title = {On the Impact of Programming Languages on Code Quality: {A} Reproduction Study}, journal = {{ACM} Trans. Program. Lang. Syst.}, volume = {41}, number = {4}, pages = {21:1--21:24}, year = {2019} }
@inproceedings{DBLP:conf/chi/SchwabHVT0B19, author = {Michail Schwab and Sicheng Hao and Olga Vitek and James Tompkin and Jeff Huang and Michelle A. Borkin}, title = {Evaluating Pan and Zoom Timelines and Sliders}, booktitle = {{CHI}}, pages = {556}, publisher = {{ACM}}, year = {2019} }
@inproceedings{DBLP:conf/nips/NessPV19, author = {Robert Osazuwa Ness and Kaushal Paneri and Olga Vitek}, title = {Integrating Markov processes with structural causal modeling enables counterfactual inference in complex systems}, booktitle = {NeurIPS}, pages = {14211--14221}, year = {2019} }
@article{DBLP:journals/corr/abs-1901-10220, author = {Emery D. Berger and Celeste Hollenbeck and Petr Maj and Olga Vitek and Jan Vitek}, title = {On the Impact of Programming Languages on Code Quality}, journal = {CoRR}, volume = {abs/1901.10220}, year = {2019} }
@article{DBLP:journals/corr/abs-1911-02175, author = {Robert Osazuwa Ness and Kaushal Paneri and Olga Vitek}, title = {Integrating Markov processes with structural causal modeling enables counterfactual inference in complex systems}, journal = {CoRR}, volume = {abs/1911.02175}, year = {2019} }
@article{DBLP:journals/corr/abs-1911-11894, author = {Emery D. Berger and Petr Maj and Olga Vitek and Jan Vitek}, title = {{FSE/CACM} Rebuttal\({}^{\mbox{2}}\): Correcting {A} Large-Scale Study of Programming Languages and Code Quality in GitHub}, journal = {CoRR}, volume = {abs/1911.11894}, year = {2019} }
@article{DBLP:journals/jcb/NessSMV18, author = {Robert Osazuwa Ness and Karen Sachs and Parag Mallick and Olga Vitek}, title = {A Bayesian Active Learning Experimental Design for Inferring Signaling Networks}, journal = {J. Comput. Biol.}, volume = {25}, number = {7}, pages = {709--725}, year = {2018} }
@inproceedings{DBLP:conf/recomb/GalitzineBCV18, author = {Cyril Galitzine and Pierre M. Jean Beltran and Ileana M. Cristea and Olga Vitek}, title = {Statistical Inference of Peroxisome Dynamics}, booktitle = {{RECOMB}}, series = {Lecture Notes in Computer Science}, volume = {10812}, pages = {54--74}, publisher = {Springer}, year = {2018} }
@article{DBLP:journals/bioinformatics/BemisV17, author = {Kylie A. Bemis and Olga Vitek}, title = {matter: an {R} package for rapid prototyping with larger-than-memory datasets on disk}, journal = {Bioinform.}, volume = {33}, number = {19}, pages = {3142--3144}, year = {2017} }
@inproceedings{DBLP:conf/recomb/NessSMV17, author = {Robert Osazuwa Ness and Karen Sachs and Parag Mallick and Olga Vitek}, title = {A Bayesian Active Learning Experimental Design for Inferring Signaling Networks}, booktitle = {{RECOMB}}, series = {Lecture Notes in Computer Science}, volume = {10229}, pages = {134--156}, year = {2017} }
@article{DBLP:journals/bioinformatics/BemisHEFVMSV15, author = {Kyle D. Bemis and April Harry and Livia S. Eberlin and Christina Ferreira and Stephanie M. van de Ven and Parag Mallick and Mark L. Stolowitz and Olga Vitek}, title = {\emph{Cardinal}: an {R} package for statistical analysis of mass spectrometry-based imaging experiments}, journal = {Bioinform.}, volume = {31}, number = {14}, pages = {2418--2420}, year = {2015} }
@article{DBLP:journals/bioinformatics/PalmerOTLGDVPBA15, author = {Andrew Palmer and Ekaterina Ovchinnikova and Mikael Thun{\'{e}} and R{\'{e}}gis Lavigne and Blandine Gu{\'{e}}vel and Andrey Dyatlov and Olga Vitek and Charles Pineau and Mats Bor{\'{e}}n and Theodore Alexandrov}, title = {Using collective expert judgements to evaluate quality measures of mass spectrometry images}, journal = {Bioinform.}, volume = {31}, number = {12}, pages = {375--384}, year = {2015} }
@article{DBLP:journals/bmcbi/ChengLCRAV15, author = {Lin{-}Yang Cheng and Yansheng Liu and Ching{-}Yun Chang and Hannes L. R{\"{o}}st and Ruedi Aebersold and Olga Vitek}, title = {Statistical elimination of spectral features with large between-run variation enhances quantitative protein-level conclusions in experiments with data-independent spectral acquisition}, journal = {{BMC} Bioinform.}, volume = {16}, number = {{S-2}}, pages = {A4}, year = {2015} }
@article{DBLP:journals/dagstuhl-reports/AebersoldKV15, author = {Rudolf Aebersold and Oliver Kohlbacher and Olga Vitek}, title = {Computational Mass Spectrometry (Dagstuhl Seminar 15351)}, journal = {Dagstuhl Reports}, volume = {5}, number = {8}, pages = {9--33}, year = {2015} }
@article{DBLP:journals/bioinformatics/BroudyKCSMAMASSTBSGCVMM14, author = {Daniel Broudy and Trevor Killeen and Meena Choi and Nicholas Shulman and Deepak R. Mani and Susan E. Abbatiello and Deepak Mani and Rushdy Ahmad and Alexandria K. Sahu and Birgit Schilling and Kaipo Tamura and Yuval Boss and Vagisha Sharma and Bradford W. Gibson and Steven A. Carr and Olga Vitek and Michael J. MacCoss and Brendan MacLean}, title = {A framework for installable external tools in Skyline}, journal = {Bioinform.}, volume = {30}, number = {17}, pages = {2521--2523}, year = {2014} }
@article{DBLP:journals/bioinformatics/ChoiCCBKMV14, author = {Meena Choi and Ching{-}Yun Chang and Timothy Clough and Daniel Broudy and Trevor Killeen and Brendan MacLean and Olga Vitek}, title = {MSstats: an {R} package for statistical analysis of quantitative mass spectrometry-based proteomic experiments}, journal = {Bioinform.}, volume = {30}, number = {17}, pages = {2524--2526}, year = {2014} }
@article{DBLP:journals/bioinformatics/YuHV13, author = {Danni Yu and Wolfgang Huber and Olga Vitek}, title = {Shrinkage estimation of dispersion in Negative Binomial models for RNA-seq experiments with small sample size}, journal = {Bioinform.}, volume = {29}, number = {10}, pages = {1275--1282}, year = {2013} }
@article{DBLP:journals/ploscb/Vitek13, author = {Olga Vitek}, title = {Leading a Statistical Bioinformatics Lab: It's All About Finding Balance}, journal = {PLoS Comput. Biol.}, volume = {9}, number = {11}, year = {2013} }
@article{DBLP:journals/dagstuhl-reports/AebersoldKV13, author = {Ruedi Aebersold and Oliver Kohlbacher and Olga Vitek}, title = {Computational Mass Spectrometry (Dagstuhl Seminar 13491)}, journal = {Dagstuhl Reports}, volume = {3}, number = {12}, pages = {1--16}, year = {2013} }
@article{DBLP:journals/bmcbi/BemisEFCV12, author = {Kyle D. Bemis and Livia Eberlin and Christina Ferreira and R. Cooks and Olga Vitek}, title = {Spatial segmentation and feature selection for desi imaging mass spectrometry data with spatially-aware sparse clustering}, journal = {{BMC} Bioinform.}, volume = {13}, number = {{S-18}}, pages = {A8}, year = {2012} }
@article{DBLP:journals/bmcbi/CloughTRAV12, author = {Timothy Clough and Safia Thaminy and Susanne Ragg and Ruedi Aebersold and Olga Vitek}, title = {Statistical protein quantification and significance analysis in label-free {LC-MS} experiments with complex designs}, journal = {{BMC} Bioinform.}, volume = {13}, number = {{S-16}}, pages = {S6}, year = {2012} }
@article{DBLP:journals/bmcbi/MaVN12, author = {Kelvin Ma and Olga Vitek and Alexey I. Nesvizhskii}, title = {A statistical model-building perspective to identification of {MS/MS} spectra with PeptideProphet}, journal = {{BMC} Bioinform.}, volume = {13}, number = {{S-16}}, pages = {S1}, year = {2012} }
@article{DBLP:journals/bioinformatics/YuDBKVSV11, author = {Danni Yu and John Danku and Ivan Baxter and Sungjin Kim and Olena K. Vatamaniuk and David E. Salt and Olga Vitek}, title = {Noise reduction in genome-wide perturbation screens using linear mixed-effect models}, journal = {Bioinform.}, volume = {27}, number = {16}, pages = {2173--2180}, year = {2011} }
@article{DBLP:journals/bioinformatics/ZhengZRRV11, author = {Cheng Zheng and Shucha Zhang and Susanne Ragg and Daniel Raftery and Olga Vitek}, title = {Identification and quantification of metabolites in \({}^{\mbox{1}}\)H {NMR} spectra by Bayesian model selection}, journal = {Bioinform.}, volume = {27}, number = {12}, pages = {1637--1644}, year = {2011} }
@article{DBLP:journals/ploscb/KallV11, author = {Lukas K{\"{a}}ll and Olga Vitek}, title = {Computational Mass Spectrometry-Based Proteomics}, journal = {PLoS Comput. Biol.}, volume = {7}, number = {12}, year = {2011} }
@article{DBLP:journals/ploscb/Vitek09, author = {Olga Vitek}, title = {Getting Started in Computational Mass Spectrometry-Based Proteomics}, journal = {PLoS Comput. Biol.}, volume = {5}, number = {5}, year = {2009} }
@article{DBLP:journals/bmcbi/BrusniakBCCEGLLMSVZAW08, author = {Mi{-}Youn K. Brusniak and Bernd Bodenmiller and David S. Campbell and Kelly Cooke and James Eddes and Andrew Garbutt and Hollis Lau and Simon Letarte and Lukas N. Mueller and Vagisha Sharma and Olga Vitek and Ning Zhang and Ruedi Aebersold and Julian D. Watts}, title = {Corra: Computational framework and tools for {LC-MS} discovery and targeted mass spectrometry-based proteomics}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008} }
@inproceedings{DBLP:conf/eccb/VitekBCKV05, author = {Olga Vitek and Chris Bailey{-}Kellogg and Bruce A. Craig and Paul Kuliniewicz and Jan Vitek}, title = {Reconsidering complete search algorithms for protein backbone {NMR} assignment}, booktitle = {{ECCB/JBI}}, pages = {236}, year = {2005} }
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