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ORCIDIbrahim Numanagic
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2020 – today
- 2023
[c4]Ariya Shajii, Gabriel Ramirez, Haris Smajlovic, Jessica Ray, Bonnie Berger, Saman P. Amarasinghe, Ibrahim Numanagic:
Codon: A Compiler for High-Performance Pythonic Applications and DSLs. CC 2023: 191-202- 2022
- [j8]Hamza Iseric, Can Alkan, Faraz Hach
, Ibrahim Numanagic:
Fast characterization of segmental duplication structure in multiple genome assemblies. Algorithms Mol. Biol. 17(1): 4 (2022) - [c3]Haris Smajlovic, Ariya Shajii, Bonnie Berger, Hyunghoon Cho, Ibrahim Numanagic:
Sequre: a high-performance framework for rapid development of secure bioinformatics pipelines. IPDPS Workshops 2022: 164-165 - 2021
- [c2]Hamza Iseric, Can Alkan, Faraz Hach, Ibrahim Numanagic:
BISER: Fast Characterization of Segmental Duplication Structure in Multiple Genome Assemblies. WABI 2021: 15:1-15:18
2010 – 2019
- 2019
- [j7]Ariya Shajii, Ibrahim Numanagic, Riyadh Baghdadi, Bonnie Berger, Saman P. Amarasinghe:
Seq: a high-performance language for bioinformatics. Proc. ACM Program. Lang. 3(OOPSLA): 125:1-125:29 (2019) - [r1]Kaiyuan Zhu, Ibrahim Numanagic, Süleyman Cenk Sahinalp:
Genomic Data Compression. Encyclopedia of Big Data Technologies 2019 - 2018
- [j6]Yen-Yi Lin, Alexander Gawronski, Faraz Hach, Sujun Li, Ibrahim Numanagic, Iman Sarrafi, Swati Mishra, Andrew W. McPherson, Colin C. Collins, Milan Radovich, Haixu Tang, Süleyman Cenk Sahinalp:
Computational identification of micro-structural variations and their proteogenomic consequences in cancer. Bioinform. 34(10): 1672-1681 (2018) - [j5]Ibrahim Numanagic, Alim S. Gökkaya, Lillian Zhang, Bonnie Berger, Can Alkan, Faraz Hach:
Fast characterization of segmental duplications in genome assemblies. Bioinform. 34(17): i706-i714 (2018) - [c1]Ariya Shajii, Ibrahim Numanagic, Bonnie Berger:
Latent Variable Model for Aligning Barcoded Short-Reads Improves Downstream Analyses. RECOMB 2018: 280-282 - [i1]Ibrahim Numanagic, Alim S. Gökkaya, Lillian Zhang, Bonnie Berger, Can Alkan, Faraz Hach:
Fast Characterization of Segmental Duplications in Genome Assemblies. CoRR abs/1807.00205 (2018) - 2017
- [j4]Pinar Kavak, Yen-Yi Lin, Ibrahim Numanagic, Hossein Asghari, Tunga Güngör, Can Alkan, Faraz Hach:
Discovery and genotyping of novel sequence insertions in many sequenced individuals. Bioinform. 33(14): i161-i169 (2017) - 2015
- [j3]Ibrahim Numanagic, Salem Malikic, Victoria M. Pratt, Todd C. Skaar, David A. Flockhart, Süleyman Cenk Sahinalp:
Cypiripi: exact genotyping of CYP2D6 using high-throughput sequencing data. Bioinform. 31(12): 27-34 (2015) - 2014
- [j2]Phuong Dao, Ibrahim Numanagic, Yen-Yi Lin, Faraz Hach, Emre Karakoç, Nilgun Donmez, Colin C. Collins, Evan E. Eichler, Süleyman Cenk Sahinalp:
ORMAN: Optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms. Bioinform. 30(5): 644-651 (2014) - 2012
- [j1]Faraz Hach, Ibrahim Numanagic, Can Alkan, Süleyman Cenk Sahinalp:
SCALCE: boosting sequence compression algorithms using locally consistent encoding. Bioinform. 28(23): 3051-3057 (2012)
Coauthor Index
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