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Alireza Mehrtash
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Journal Articles
- 2024
- [j12]Alireza Mehrtash
, Erik Ziegler
, Tagwa Idris
, Bhanusupriya Somarouthu, Trinity Urban, Ann S. LaCasce
, Heather Jacene, Annick D. Van den Abbeele, Steve Pieper
, Gordon J. Harris
, Ron Kikinis
, Tina Kapur:
Evaluation of mediastinal lymph node segmentation of heterogeneous CT data with full and weak supervision. Comput. Medical Imaging Graph. 111: 102312 (2024) - 2023
- [j11]Amir Rouhollahi
, James Noel Willi, Sandra Haltmeier, Alireza Mehrtash, Ross Straughan
, Hoda Javadikasgari, Jonathan Brown, Akinobu Itoh, Kim I. de la Cruz, Elena Aikawa, Elazer R. Edelman, Farhad Rikhtegar Nezami:
CardioVision: A fully automated deep learning package for medical image segmentation and reconstruction generating digital twins for patients with aortic stenosis. Comput. Medical Imaging Graph. 109: 102289 (2023) - [j10]Ruben T. Lucassen
, Mohammad H. Jafari
, Nicole M. Duggan
, Nick Jowkar, Alireza Mehrtash
, Chanel E. Fischetti
, Denie Bernier, Kira Prentice, Erik P. Duhaime
, Mike Jin
, Purang Abolmaesumi
, Friso G. Heslinga
, Mitko Veta
, Maria Alejandra Duran Mendicuti, Sarah F. Frisken
, Paul B. Shyn
, Alexandra J. Golby, Edward W. Boyer, William M. Wells III, Andrew J. Goldsmith, Tina Kapur
:
Deep Learning for Detection and Localization of B-Lines in Lung Ultrasound. IEEE J. Biomed. Health Informatics 27(9): 4352-4361 (2023) - 2021
- [j9]Yoganand Balagurunathan
, Andrew Beers, Michael F. McNitt-Gray
, Lubomir M. Hadjiiski, Sandy Napel
, Dmitry B. Goldgof
, Gustavo Pérez
, Pablo Arbeláez
, Alireza Mehrtash
, Tina Kapur
, Ehwa Yang, Jung Won Moon, Gabriel Bernardino Perez
, Ricard Delgado-Gonzalo
, Mohammad Mehdi Farhangi, Amir A. Amini
, Renkun Ni, Xue Feng
, Aditya Bagari, Kiran Vaidhya, Benjamin Veasey
, Wiem Safta, Hichem Frigui, Joseph Enguehard, Ali Gholipour
, Laura Silvana Castillo, Laura Alexandra Daza, Paul F. Pinsky, Jayashree Kalpathy-Cramer, Keyvan Farahani:
Lung Nodule Malignancy Prediction in Sequential CT Scans: Summary of ISBI 2018 Challenge. IEEE Trans. Medical Imaging 40(12): 3748-3761 (2021) - 2020
- [j8]Alireza Sedghi, Alireza Mehrtash, Amoon Jamzad, Amel Amalou, William M. Wells III, Tina Kapur, Jin Tae Kwak
, Baris Turkbey, Peter L. Choyke, Peter A. Pinto, Bradford J. Wood
, Sheng Xu, Purang Abolmaesumi, Parvin Mousavi:
Improving detection of prostate cancer foci via information fusion of MRI and temporal enhanced ultrasound. Int. J. Comput. Assist. Radiol. Surg. 15(7): 1215-1223 (2020) - [j7]Mehrnoush Soroush
, Alireza Mehrtash
, Emad Khazraee, Jason A. Ur
:
Deep Learning in Archaeological Remote Sensing: Automated Qanat Detection in the Kurdistan Region of Iraq. Remote. Sens. 12(3): 500 (2020) - [j6]Christian Herz
, Kemal Tuncali, Andriy Fedorov
, Kyle MacNeil, Peter A. Behringer, Junichi Tokuda
, Alireza Mehrtash, Parvin Mousavi, Ron Kikinis, Fiona M. Fennessy, Clare M. Tempany:
Open Source Platform for Transperineal In-Bore MRI-Guided Targeted Prostate Biopsy. IEEE Trans. Biomed. Eng. 67(2): 565-576 (2020) - [j5]Alireza Mehrtash
, William M. Wells III, Clare M. Tempany, Purang Abolmaesumi
, Tina Kapur
:
Confidence Calibration and Predictive Uncertainty Estimation for Deep Medical Image Segmentation. IEEE Trans. Medical Imaging 39(12): 3868-3878 (2020) - 2019
- [j4]Alireza Mehrtash
, Mohsen Ghafoorian, Guillaume Pernelle, Alireza Ziaei, Friso G. Heslinga
, Kemal Tuncali, Andriy Fedorov
, Ron Kikinis, Clare M. Tempany, William M. Wells III, Purang Abolmaesumi
, Tina Kapur
:
Automatic Needle Segmentation and Localization in MRI With 3-D Convolutional Neural Networks: Application to MRI-Targeted Prostate Biopsy. IEEE Trans. Medical Imaging 38(4): 1026-1036 (2019) - [j3]Hugo J. Kuijf
, Adrià Casamitjana
, D. Louis Collins
, Mahsa Dadar
, Achilleas Georgiou, Mohsen Ghafoorian, Dakai Jin, April Khademi
, Jesse Knight
, Hongwei Li
, Xavier Lladó
, J. Matthijs Biesbroek
, Miguel Luna, Qaiser Mahmood, Richard McKinley
, Alireza Mehrtash
, Sébastien Ourselin
, Bo-yong Park
, Hyunjin Park
, Sang Hyun Park, Simon Pezold
, Élodie Puybareau, Jeroen de Bresser
, Letícia Rittner
, Carole H. Sudre
, Sergi Valverde, Verónica Vilaplana
, Roland Wiest, Yongchao Xu, Ziyue Xu, Guodong Zeng, Jianguo Zhang
, Guoyan Zheng, Rutger Heinen
, Christopher Chen
, Wiesje M. van der Flier, Frederik Barkhof
, Max A. Viergever, Geert Jan Biessels, Simon Andermatt, Mariana P. Bento
, Matt Berseth, Mikhail Belyaev
, M. Jorge Cardoso
:
Standardized Assessment of Automatic Segmentation of White Matter Hyperintensities and Results of the WMH Segmentation Challenge. IEEE Trans. Medical Imaging 38(11): 2556-2568 (2019) - 2018
- [j2]Jie Luo, Sarah F. Frisken, Inês Machado, Miaomiao Zhang, Steve Pieper, Polina Golland, Matthew Toews, Prashin Unadkat
, Alireza Sedghi, Haoyin Zhou, Alireza Mehrtash
, Frank Preiswerk, Cheng-Chieh Cheng, Alexandra J. Golby, Masashi Sugiyama
, William M. Wells III:
Using the variogram for vector outlier screening: application to feature-based image registration. Int. J. Comput. Assist. Radiol. Surg. 13(12): 1871-1880 (2018) - 2016
- [j1]Zhenrui Chen, Yanmei Tie, Olutayo I. Olubiyi
, Fan Zhang, Alireza Mehrtash
, Laura Rigolo, Pegah Kahali, Isaiah Norton, Ofer Pasternak, Yogesh Rathi, Alexandra J. Golby, Lauren J. O'Donnell
:
Corticospinal tract modeling for neurosurgical planning by tracking through regions of peritumoral edema and crossing fibers using two-tensor unscented Kalman filter tractography. Int. J. Comput. Assist. Radiol. Surg. 11(8): 1475-1486 (2016)
Conference and Workshop Papers
- 2021
- [c10]Alireza Mehrtash, Tina Kapur, Clare M. Tempany, Purang Abolmaesumi, William M. Wells III:
Prostate Cancer Diagnosis With Sparse Biopsy Data And In Presence Of Location Uncertainty. ISBI 2021: 443-447 - 2020
- [c9]Alireza Mehrtash, Purang Abolmaesumi, Polina Golland, Tina Kapur, Demian Wassermann, William M. Wells III:
PEP: Parameter Ensembling by Perturbation. NeurIPS 2020 - 2019
- [c8]Alireza Sedghi, Soheil Hamidi, Alireza Mehrtash
, Erik Ziegler, Clare M. Tempany, Steve Pieper, Tina Kapur, Parvin Mousavi:
Tesseract-medical imaging: open-source browser-based platform for artificial intelligence deployment in medical imaging. Medical Imaging: Image-Guided Procedures 2019: 109511R - [c7]Alireza Sedghi, Jie Luo, Alireza Mehrtash
, Steve Pieper, Clare M. Tempany, Tina Kapur, Parvin Mousavi, William M. Wells III:
Semi-supervised image registration using deep learning. Medical Imaging: Image-Guided Procedures 2019: 109511G - 2018
- [c6]Anneke Meyer, Alireza Mehrtash
, Marko Rak, Daniel Schindele, Martin Schostak, Clare M. Tempany, Tina Kapur, Purang Abolmaesumi, Andriy Fedorov
, Christian Hansen
:
Automatic high resolution segmentation of the prostate from multi-planar MRI. ISBI 2018: 177-181 - 2017
- [c5]Alireza Mehrtash
, Alireza Sedghi, Mohsen Ghafoorian, Mehdi Taghipour, Clare M. Tempany, William M. Wells III, Tina Kapur, Parvin Mousavi
, Purang Abolmaesumi, Andriy Fedorov
:
Classification of clinical significance of MRI prostate findings using 3D convolutional neural networks. Medical Imaging: Computer-Aided Diagnosis 2017: 101342A - [c4]Mohsen Ghafoorian, Alireza Mehrtash, Tina Kapur, Nico Karssemeijer, Elena Marchiori, Mehran Pesteie, Charles R. G. Guttmann, Frank-Erik de Leeuw, Clare M. Tempany, Bram van Ginneken
, Andriy Fedorov
, Purang Abolmaesumi, Bram Platel, William M. Wells III:
Transfer Learning for Domain Adaptation in MRI: Application in Brain Lesion Segmentation. MICCAI (3) 2017: 516-524 - [c3]Alireza Mehrtash
, Mehran Pesteie, Jorden Hetherington, Peter A. Behringer, Tina Kapur, William M. Wells III, Robert Rohling, Andriy Fedorov
, Purang Abolmaesumi:
DeepInfer: open-source deep learning deployment toolkit for image-guided therapy. Medical Imaging: Image-Guided Procedures 2017: 101351K - 2014
- [c2]Alireza Mehrtash
, Antonio Damato, Guillaume Pernelle, Lauren Barber, Nabgha Farhat, Akila N. Viswanathan
, Robert A. Cormack, Tina Kapur:
EM-navigated catheter placement for gynecologic brachytherapy: an accuracy study. Medical Imaging: Image-Guided Procedures 2014: 90361F - 2013
- [c1]Guillaume Pernelle, Alireza Mehrtash, Lauren Barber, Antonio Damato, Wei Wang, Ravi Teja Seethamraju
, Ehud J. Schmidt, Robert A. Cormack
, William M. Wells III, Akila N. Viswanathan
, Tina Kapur:
Validation of Catheter Segmentation for MR-Guided Gynecologic Cancer Brachytherapy. MICCAI (3) 2013: 380-387
Informal and Other Publications
- 2020
- [i6]Alireza Mehrtash, Purang Abolmaesumi, Polina Golland, Tina Kapur, Demian Wassermann, William M. Wells III:
PEP: Parameter Ensembling by Perturbation. CoRR abs/2010.12721 (2020) - 2019
- [i5]Alireza Sedghi, Jie Luo, Alireza Mehrtash
, Steve Pieper, Clare M. Tempany, Tina Kapur, Parvin Mousavi, William M. Wells III:
Deep Information Theoretic Registration. CoRR abs/1901.00040 (2019) - [i4]Hugo J. Kuijf, J. Matthijs Biesbroek, Jeroen de Bresser, Rutger Heinen, Simon Andermatt, Mariana P. Bento, Matt Berseth, Mikhail Belyaev, M. Jorge Cardoso, Adrià Casamitjana, D. Louis Collins, Mahsa Dadar, Achilleas Georgiou, Mohsen Ghafoorian, Dakai Jin, April Khademi, Jesse Knight, Hongwei Li, Xavier Lladó, Miguel Luna, Qaiser Mahmood, Richard McKinley, Alireza Mehrtash, Sébastien Ourselin, Bo-yong Park, Hyunjin Park, Sang Hyun Park, Simon Pezold, Élodie Puybareau, Letícia Rittner, Carole H. Sudre, Sergi Valverde, Verónica Vilaplana, Roland Wiest, Yongchao Xu, Ziyue Xu, Guodong Zeng, Jianguo Zhang, Guoyan Zheng, Christopher Chen, Wiesje M. van der Flier, Frederik Barkhof, Max A. Viergever, Geert Jan Biessels:
Standardized Assessment of Automatic Segmentation of White Matter Hyperintensities and Results of the WMH Segmentation Challenge. CoRR abs/1904.00682 (2019) - [i3]Alireza Mehrtash, William M. Wells III, Clare M. Tempany, Purang Abolmaesumi, Tina Kapur:
Confidence Calibration and Predictive Uncertainty Estimation for Deep Medical Image Segmentation. CoRR abs/1911.13273 (2019) - 2018
- [i2]Alireza Sedghi, Jie Luo, Alireza Mehrtash
, Steve Pieper, Clare M. Tempany, Tina Kapur, Parvin Mousavi, William M. Wells III:
Semi-Supervised Deep Metrics for Image Registration. CoRR abs/1804.01565 (2018) - 2017
- [i1]Mohsen Ghafoorian, Alireza Mehrtash, Tina Kapur, Nico Karssemeijer, Elena Marchiori, Mehran Pesteie, Charles R. G. Guttmann, Frank-Erik de Leeuw, Clare M. Tempany, Bram van Ginneken, Andriy Fedorov, Purang Abolmaesumi, Bram Platel, William M. Wells III:
Transfer Learning for Domain Adaptation in MRI: Application in Brain Lesion Segmentation. CoRR abs/1702.07841 (2017)
Coauthor Index
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