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ORCIDGeoffrey I. Webb
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- affiliation: Monash University, Melbourne, Australia
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2020 – today
- 2023
[j114]Yan Zhu, Fuyi Li, Xudong Guo, Xiaoyu Wang, Lachlan J. M. Coin, Geoffrey I. Webb, Jiangning Song, Cangzhi Jia:
TIMER is a Siamese neural network-based framework for identifying both general and species-specific bacterial promoters. Briefings Bioinform. 24(4) (2023)- [j113]Angus Dempster
, Daniel F. Schmidt, Geoffrey I. Webb:
Hydra: competing convolutional kernels for fast and accurate time series classification. Data Min. Knowl. Discov. 37(5): 1779-1805 (2023) - [j112]Matthieu Herrmann, Chang Wei Tan, Geoffrey I. Webb:
Parameterizing the cost function of dynamic time warping with application to time series classification. Data Min. Knowl. Discov. 37(5): 2024-2045 (2023) - [j111]Chang Wei Tan, Matthieu Herrmann, Geoffrey I. Webb:
Ultra-fast meta-parameter optimization for time series similarity measures with application to nearest neighbour classification. Knowl. Inf. Syst. 65(5): 2123-2157 (2023) - [j110]Ahmed Shifaz, Charlotte Pelletier, François Petitjean, Geoffrey I. Webb:
Elastic similarity and distance measures for multivariate time series. Knowl. Inf. Syst. 65(6): 2665-2698 (2023) - [j109]Benjamin Lucas, Charlotte Pelletier, Daniel F. Schmidt, Geoffrey I. Webb, François Petitjean:
A Bayesian-inspired, deep learning-based, semi-supervised domain adaptation technique for land cover mapping. Mach. Learn. 112(6): 1941-1973 (2023) - [j108]Rakshitha Godahewa, Geoffrey I. Webb, Daniel F. Schmidt, Christoph Bergmeir:
SETAR-Tree: a novel and accurate tree algorithm for global time series forecasting. Mach. Learn. 112(7): 2555-2591 (2023) - [j107]Matthieu Herrmann, Geoffrey I. Webb:
Amercing: An intuitive and effective constraint for dynamic time warping. Pattern Recognit. 137: 109333 (2023) - [j106]Huan Zhang, Liangxiao Jiang, Geoffrey I. Webb:
Rigorous non-disjoint discretization for naive Bayes. Pattern Recognit. 140: 109554 (2023) - [c91]Loong Kuan Lee, Nico Piatkowski, François Petitjean, Geoffrey I. Webb:
Computing Divergences between Discrete Decomposable Models. AAAI 2023: 12243-12251 - [i50]Matthieu Herrmann, Chang Wei Tan, Geoffrey I. Webb:
Parameterizing the cost function of Dynamic Time Warping with application to time series classification. CoRR abs/2301.10350 (2023) - [i49]Seyed Navid Mohammadi Foumani, Lynn Miller, Chang Wei Tan, Geoffrey I. Webb, Germain Forestier, Mahsa Salehi:
Deep Learning for Time Series Classification and Extrinsic Regression: A Current Survey. CoRR abs/2302.02515 (2023) - [i48]Matthieu Herrmann, Chang Wei Tan, Mahsa Salehi, Geoffrey I. Webb:
Proximity Forest 2.0: A new effective and scalable similarity-based classifier for time series. CoRR abs/2304.05800 (2023) - [i47]Ali Ismail-Fawaz, Angus Dempster, Chang Wei Tan, Matthieu Herrmann, Lynn Miller, Daniel F. Schmidt, Stefano Berretti, Jonathan Weber, Maxime Devanne, Germain Forestier, Geoffrey I. Webb:
An Approach to Multiple Comparison Benchmark Evaluations that is Stable Under Manipulation of the Comparate Set. CoRR abs/2305.11921 (2023) - [i46]Seyed Navid Mohammadi Foumani, Chang Wei Tan, Geoffrey I. Webb, Mahsa Salehi:
Improving Position Encoding of Transformers for Multivariate Time Series Classification. CoRR abs/2305.16642 (2023) - [i45]Ming Jin, Huan Yee Koh, Qingsong Wen, Daniele Zambon, Cesare Alippi, Geoffrey I. Webb, Irwin King, Shirui Pan:
A Survey on Graph Neural Networks for Time Series: Forecasting, Classification, Imputation, and Anomaly Detection. CoRR abs/2307.03759 (2023) - [i44]Angus Dempster, Daniel F. Schmidt, Geoffrey I. Webb:
QUANT: A Minimalist Interval Method for Time Series Classification. CoRR abs/2308.00928 (2023) - [i43]Zahra Zamanzadeh Darban, Geoffrey I. Webb, Shirui Pan, Mahsa Salehi:
CARLA: A Self-supervised Contrastive Representation Learning Approach for Time Series Anomaly Detection. CoRR abs/2308.09296 (2023) - 2022
- [j105]Fuyi Li, Shuangyu Dong, André Leier, Meiya Han, Xudong Guo, Jing Xu, Xiaoyu Wang, Shirui Pan, Cangzhi Jia, Yang Zhang, Geoffrey I. Webb, Lachlan J. M. Coin, Chen Li, Jiangning Song:
Positive-unlabeled learning in bioinformatics and computational biology: a brief review. Briefings Bioinform. 23(1) (2022) - [j104]Xiaoyu Wang, Fuyi Li, Jing Xu, Jia Rong, Geoffrey I. Webb, Zongyuan Ge, Jian Li, Jiangning Song:
ASPIRER: a new computational approach for identifying non-classical secreted proteins based on deep learning. Briefings Bioinform. 23(2) (2022) - [j103]Meng Zhang, Cangzhi Jia, Fuyi Li, Chen Li, Yan Zhu, Tatsuya Akutsu, Geoffrey I. Webb, Quan Zou, Lachlan J. M. Coin, Jiangning Song:
Critical assessment of computational tools for prokaryotic and eukaryotic promoter prediction. Briefings Bioinform. 23(2) (2022) - [j102]Yue Bi, Fuyi Li, Xudong Guo, Zhikang Wang, Tong Pan, Yuming Guo, Geoffrey I. Webb, Jianhua Yao, Cangzhi Jia, Jiangning Song:
Clarion is a multi-label problem transformation method for identifying mRNA subcellular localizations. Briefings Bioinform. 23(6) (2022) - [j101]Yanan Wang, Changyuan Hu, Terry Kwok, Christopher A. Bain, Xiangyang Xue, Robin B. Gasser, Geoffrey I. Webb, Alex Boussioutas, Xian Shen, Roger J. Daly, Jiangning Song:
DEMoS: a deep learning-based ensemble approach for predicting the molecular subtypes of gastric adenocarcinomas from histopathological images. Bioinform. 38(17): 4206-4213 (2022) - [j100]Chaitanya Manapragada, Heitor Murilo Gomes, Mahsa Salehi, Albert Bifet, Geoffrey I. Webb:
An eager splitting strategy for online decision trees in ensembles. Data Min. Knowl. Discov. 36(2): 566-619 (2022) - [j99]Chang Wei Tan, Angus Dempster, Christoph Bergmeir, Geoffrey I. Webb:
MultiRocket: multiple pooling operators and transformations for fast and effective time series classification. Data Min. Knowl. Discov. 36(5): 1623-1646 (2022) - [j98]Lynn Miller, Liujun Zhu, Marta Yebra, Christoph Rüdiger, Geoffrey I. Webb:
Multi-modal temporal CNNs for live fuel moisture content estimation. Environ. Model. Softw. 156: 105467 (2022) - [j97]Shahid Iqbal, Fang Ge, Fuyi Li, Tatsuya Akutsu, Yuanting Zheng, Robin B. Gasser, Dong-Jun Yu, Geoffrey I. Webb, Jiangning Song:
PROST: AlphaFold2-aware Sequence-Based Predictor to Estimate Protein Stability Changes upon Missense Mutations. J. Chem. Inf. Model. 62(17): 4270-4282 (2022) - [j96]Khanh Nguyen, Trung Le, Tu Dinh Nguyen, Geoffrey I. Webb, Dinh Phung:
Robust Variational Learning for Multiclass Kernel Models With Stein Refinement. IEEE Trans. Knowl. Data Eng. 34(9): 4425-4438 (2022) - [c90]Chaitanya Manapragada, Mahsa Salehi, Geoffrey I. Webb:
Extremely Fast Hoeffding Adaptive Tree. ICDM 2022: 319-328 - [c89]Gautier Pialla, Hassan Ismail Fawaz, Maxime Devanne, Jonathan Weber, Lhassane Idoumghar, Pierre-Alain Muller, Christoph Bergmeir, Daniel F. Schmidt, Geoffrey I. Webb, Germain Forestier:
Smooth Perturbations for Time Series Adversarial Attacks. PAKDD (1) 2022: 485-496 - [i42]Angus Dempster, Daniel F. Schmidt, Geoffrey I. Webb:
HYDRA: Competing convolutional kernels for fast and accurate time series classification. CoRR abs/2203.13652 (2022) - [i41]Zahra Zamanzadeh Darban, Geoffrey I. Webb, Shirui Pan, Charu C. Aggarwal, Mahsa Salehi:
Deep Learning for Time Series Anomaly Detection: A Survey. CoRR abs/2211.05244 (2022) - [i40]Rakshitha Godahewa, Geoffrey I. Webb, Daniel F. Schmidt, Christoph Bergmeir:
SETAR-Tree: A Novel and Accurate Tree Algorithm for Global Time Series Forecasting. CoRR abs/2211.08661 (2022) - 2021
- [j95]Shutao Mei, Fuyi Li, Dongxu Xiang, Rochelle Ayala, Pouya Faridi, Geoffrey I. Webb, Patricia T. Illing, Jamie Rossjohn, Tatsuya Akutsu, Nathan P. Croft, Anthony W. Purcell, Jiangning Song:
Anthem: a user customised tool for fast and accurate prediction of binding between peptides and HLA class I molecules. Briefings Bioinform. 22(5) (2021) - [j94]Shahid Iqbal, Fuyi Li, Tatsuya Akutsu, David B. Ascher, Geoffrey I. Webb, Jiangning Song:
Assessing the performance of computational predictors for estimating protein stability changes upon missense mutations. Briefings Bioinform. 22(6) (2021) - [j93]Yanan Wang, Litao Yang, Geoffrey I. Webb, Zongyuan Ge, Jiangning Song:
OCTID: a one-class learning-based Python package for tumor image detection. Bioinform. 37(21): 3986-3988 (2021) - [j92]Yanan Wang, Nicolas Coudray, Yun Zhao, Fuyi Li, Changyuan Hu, Yao-Zhong Zhang, Seiya Imoto, Aristotelis Tsirigos, Geoffrey I. Webb, Roger J. Daly, Jiangning Song:
HEAL: an automated deep learning framework for cancer histopathology image analysis. Bioinform. 37(22): 4291-4295 (2021) - [j91]Chang Wei Tan, Christoph Bergmeir, François Petitjean, Geoffrey I. Webb:
Time series extrinsic regression. Data Min. Knowl. Discov. 35(3): 1032-1060 (2021) - [j90]Matthieu Herrmann, Geoffrey I. Webb:
Early abandoning and pruning for elastic distances including dynamic time warping. Data Min. Knowl. Discov. 35(6): 2577-2601 (2021) - [j89]Rakshitha Godahewa, Kasun Bandara, Geoffrey I. Webb, Slawek Smyl, Christoph Bergmeir:
Ensembles of localised models for time series forecasting. Knowl. Based Syst. 233: 107518 (2021) - [j88]Geoffrey I. Webb, François Petitjean:
Tight lower bounds for dynamic time warping. Pattern Recognit. 115: 107895 (2021) - [j87]Menglu Li, Yanan Wang, Fuyi Li, Yun Zhao, Mengya Liu, Sijia Zhang, Yannan Bin, Alexander Ian Smith, Geoffrey I. Webb, Jian Li, Jiangning Song, Junfeng Xia:
A Deep Learning-Based Method for Identification of Bacteriophage-Host Interaction. IEEE ACM Trans. Comput. Biol. Bioinform. 18(5): 1801-1810 (2021) - [c88]Chang Wei Tan, Matthieu Herrmann, Geoffrey I. Webb:
Ultra fast warping window optimization for Dynamic Time Warping. ICDM 2021: 589-598 - [c87]Angus Dempster, Daniel F. Schmidt, Geoffrey I. Webb:
MiniRocket: A Very Fast (Almost) Deterministic Transform for Time Series Classification. KDD 2021: 248-257 - [c86]Rakshitha Godahewa, Christoph Bergmeir, Geoffrey I. Webb, Rob J. Hyndman, Pablo Montero-Manso:
Monash Time Series Forecasting Archive. NeurIPS Datasets and Benchmarks 2021 - [c85]Mario Boley, Simon Teshuva, Pierre Le Bodic, Geoffrey I. Webb:
Better Short than Greedy: Interpretable Models through Optimal Rule Boosting. SDM 2021: 351-359 - [i39]Mario Boley, Simon Teshuva, Pierre Le Bodic, Geoffrey I. Webb:
Better Short than Greedy: Interpretable Models through Optimal Rule Boosting. CoRR abs/2101.08380 (2021) - [i38]Chang Wei Tan, Angus Dempster, Christoph Bergmeir, Geoffrey I. Webb:
MultiRocket: Effective summary statistics for convolutional outputs in time series classification. CoRR abs/2102.00457 (2021) - [i37]Matthieu Herrmann, Geoffrey I. Webb:
Early Abandoning and Pruning for Elastic Distances. CoRR abs/2102.05221 (2021) - [i36]Geoffrey I. Webb, François Petitjean:
Tight lower bounds for Dynamic Time Warping. CoRR abs/2102.07076 (2021) - [i35]Ahmed Shifaz, Charlotte Pelletier, François Petitjean, Geoffrey I. Webb:
Elastic Similarity Measures for Multivariate Time Series Classification. CoRR abs/2102.10231 (2021) - [i34]Rakshitha Godahewa, Christoph Bergmeir, Geoffrey I. Webb, Rob J. Hyndman, Pablo Montero-Manso:
Monash Time Series Forecasting Archive. CoRR abs/2105.06643 (2021) - [i33]Matthieu Herrmann, Geoffrey I. Webb:
Amercing: An Intuitive, Elegant and Effective Constraint for Dynamic Time Warping. CoRR abs/2111.13314 (2021) - [i32]Loong Kuan Lee, Nico Piatkowski, François Petitjean, Geoffrey I. Webb:
Estimating Divergences in High Dimensions. CoRR abs/2112.04583 (2021) - 2020
- [j86]Nayyar Abbas Zaidi, Yang Du, Geoffrey I. Webb:
On the Effectiveness of Discretizing Quantitative Attributes in Linear Classifiers. IEEE Access 8: 198856-198871 (2020) - [j85]Zhen Chen, Pei Zhao, Fuyi Li, Tatiana T. Marquez-Lago, André Leier, Jerico Nico De Leon Revote, Yan Zhu, David R. Powell, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Alexander Ian Smith, Roger J. Daly, Jian Li, Jiangning Song:
iLearn : an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data. Briefings Bioinform. 21(3): 1047-1057 (2020) - [j84]Fuyi Li, Cunshuo Fan, Tatiana T. Marquez-Lago, André Leier, Jerico Nico De Leon Revote, Cangzhi Jia, Yan Zhu, Alexander Ian Smith, Geoffrey I. Webb, Quanzhong Liu, Leyi Wei, Jian Li, Jiangning Song:
PRISMOID: a comprehensive 3D structure database for post-translational modifications and mutations with functional impact. Briefings Bioinform. 21(3): 1069-1079 (2020) - [j83]Zhen Chen, Pei Zhao, Fuyi Li, Yanan Wang, Alexander Ian Smith, Geoffrey I. Webb, Tatsuya Akutsu, Abdelkader Baggag, Halima Bensmail, Jiangning Song:
Comprehensive review and assessment of computational methods for predicting RNA post-transcriptional modification sites from RNA sequences. Briefings Bioinform. 21(5): 1676-1696 (2020) - [j82]Fuyi Li, Jinxiang Chen, André Leier, Tatiana T. Marquez-Lago, Quanzhong Liu, Yanze Wang, Jerico Nico De Leon Revote, Alexander Ian Smith, Tatsuya Akutsu, Geoffrey I. Webb, Lukasz A. Kurgan, Jiangning Song:
DeepCleave: a deep learning predictor for caspase and matrix metalloprotease substrates and cleavage sites. Bioinform. 36(4): 1057-1065 (2020) - [j81]Chang Wei Tan, François Petitjean, Geoffrey I. Webb:
FastEE: Fast Ensembles of Elastic Distances for time series classification. Data Min. Knowl. Discov. 34(1): 231-272 (2020) - [j80]Ahmed Shifaz, Charlotte Pelletier, François Petitjean, Geoffrey I. Webb:
TS-CHIEF: a scalable and accurate forest algorithm for time series classification. Data Min. Knowl. Discov. 34(3): 742-775 (2020) - [j79]Angus Dempster, François Petitjean, Geoffrey I. Webb:
ROCKET: exceptionally fast and accurate time series classification using random convolutional kernels. Data Min. Knowl. Discov. 34(5): 1454-1495 (2020) - [j78]Hassan Ismail Fawaz, Benjamin Lucas, Germain Forestier, Charlotte Pelletier, Daniel F. Schmidt, Jonathan Weber, Geoffrey I. Webb, Lhassane Idoumghar, Pierre-Alain Muller, François Petitjean:
InceptionTime: Finding AlexNet for time series classification. Data Min. Knowl. Discov. 34(6): 1936-1962 (2020) - [j77]Fuyi Li, André Leier, Quanzhong Liu, Yanan Wang, Dongxu Xiang, Tatsuya Akutsu, Geoffrey I. Webb, Alexander Ian Smith, Tatiana T. Marquez-Lago, Jian Li, Jiangning Song:
Procleave: Predicting Protease-specific Substrate Cleavage Sites by Combining Sequence and Structural Information. Genom. Proteom. Bioinform. 18(1): 52-64 (2020) - [j76]Zhen Chen, Pei Zhao, Fuyi Li, André Leier, Tatiana T. Marquez-Lago, Geoffrey I. Webb, Abdelkader Baggag, Halima Bensmail, Jiangning Song:
PROSPECT: A web server for predicting protein histidine phosphorylation sites. J. Bioinform. Comput. Biol. 18(4): 2050018:1-2050018:17 (2020) - [j75]Igor Goldenberg, Geoffrey I. Webb:
PCA-based drift and shift quantification framework for multidimensional data. Knowl. Inf. Syst. 62(7): 2835-2854 (2020) - [j74]Shenglei Chen, Geoffrey I. Webb, Linyuan Liu, Xin Ma:
A novel selective naïve Bayes algorithm. Knowl. Based Syst. 192: 105361 (2020) - [j73]Mahardhika Pratama, Witold Pedrycz, Geoffrey I. Webb:
An Incremental Construction of Deep Neuro Fuzzy System for Continual Learning of Nonstationary Data Streams. IEEE Trans. Fuzzy Syst. 28(7): 1315-1328 (2020) - [c84]Raphael Fischer, Nico Piatkowski, Charlotte Pelletier, Geoffrey I. Webb, François Petitjean, Katharina Morik:
No Cloud on the Horizon: Probabilistic Gap Filling in Satellite Image Series. DSAA 2020: 546-555 - [c83]Benjamin Lucas, Charlotte Pelletier, Daniel F. Schmidt, Geoffrey I. Webb, François Petitjean:
Unsupervised Domain Adaptation Techniques for Classification of Satellite Image Time Series. IGARSS 2020: 1074-1077 - [c82]Geoffrey I. Webb:
Time Series Classification at Scale. LWDA 2020: 2 - [e14]Geoffrey I. Webb, Zhongfei Zhang, Vincent S. Tseng, Graham Williams, Michalis Vlachos, Longbing Cao:
7th IEEE International Conference on Data Science and Advanced Analytics, DSAA 2020, Sydney, Australia, October 6-9, 2020. IEEE 2020, ISBN 978-1-7281-8206-3 [contents] - [i31]Benjamin Lucas, Charlotte Pelletier, Daniel F. Schmidt, Geoffrey I. Webb, François Petitjean:
A Bayesian-inspired, deep learning, semi-supervised domain adaptation technique for land cover mapping. CoRR abs/2005.11930 (2020) - [i30]Chang Wei Tan, Christoph Bergmeir, François Petitjean, Geoffrey I. Webb:
Monash University, UEA, UCR Time Series Regression Archive. CoRR abs/2006.10996 (2020) - [i29]Chang Wei Tan, Christoph Bergmeir, François Petitjean, Geoffrey I. Webb:
Time Series Regression. CoRR abs/2006.12672 (2020) - [i28]Matthieu Herrmann, Geoffrey I. Webb:
Early Abandoning PrunedDTW and its application to similarity search. CoRR abs/2010.05371 (2020) - [i27]Rakshitha Godahewa, Christoph Bergmeir, Geoffrey I. Webb, Pablo Montero-Manso:
A Strong Baseline for Weekly Time Series Forecasting. CoRR abs/2010.08158 (2020) - [i26]Chaitanya Manapragada, Geoffrey I. Webb, Mahsa Salehi, Albert Bifet:
Emergent and Unspecified Behaviors in Streaming Decision Trees. CoRR abs/2010.08199 (2020) - [i25]Chaitanya Manapragada, Heitor Murilo Gomes, Mahsa Salehi, Albert Bifet, Geoffrey I. Webb:
An Eager Splitting Strategy for Online Decision Trees. CoRR abs/2010.10935 (2020) - [i24]Yuan Jin, Wray L. Buntine, François Petitjean, Geoffrey I. Webb:
Discriminative, Generative and Self-Supervised Approaches for Target-Agnostic Learning. CoRR abs/2011.06428 (2020) - [i23]Angus Dempster, Daniel F. Schmidt, Geoffrey I. Webb:
MINIROCKET: A Very Fast (Almost) Deterministic Transform for Time Series Classification. CoRR abs/2012.08791 (2020) - [i22]Rakshitha Godahewa, Kasun Bandara, Geoffrey I. Webb, Slawek Smyl, Christoph Bergmeir:
Ensembles of Localised Models for Time Series Forecasting. CoRR abs/2012.15059 (2020) - [i21]Georg Krempl, Vera Hofer, Geoffrey I. Webb, Eyke Hüllermeier:
Beyond Adaptation: Understanding Distributional Changes (Dagstuhl Seminar 20372). Dagstuhl Reports 10(4): 1-36 (2020)
2010 – 2019
- 2019
- [j72]Jiangning Song, Yanan Wang, Fuyi Li, Tatsuya Akutsu, Neil D. Rawlings, Geoffrey I. Webb, Kuo-Chen Chou:
iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites. Briefings Bioinform. 20(2): 638-658 (2019) - [j71]Jiawei Wang, Bingjiao Yang, Yi An, Tatiana T. Marquez-Lago, André Leier, Jonathan Wilksch, Qingyang Hong, Yang Zhang, Morihiro Hayashida, Tatsuya Akutsu, Geoffrey I. Webb, Richard A. Strugnell, Jiangning Song, Trevor Lithgow:
Systematic analysis and prediction of type IV secreted effector proteins by machine learning approaches. Briefings Bioinform. 20(3): 931-951 (2019) - [j70]Fuyi Li, Yanan Wang, Chen Li, Tatiana T. Marquez-Lago, André Leier, Neil D. Rawlings, Gholamreza Haffari, Jerico Nico De Leon Revote, Tatsuya Akutsu, Kuo-Chen Chou, Anthony W. Purcell, Robert N. Pike, Geoffrey I. Webb, Alexander Ian Smith, Trevor Lithgow, Roger J. Daly, James C. Whisstock, Jiangning Song:
Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods. Briefings Bioinform. 20(6): 2150-2166 (2019) - [j69]Yanju Zhang, Ruopeng Xie, Jiawei Wang, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Jiangning Song:
Computational analysis and prediction of lysine malonylation sites by exploiting informative features in an integrative machine-learning framework. Briefings Bioinform. 20(6): 2185-2199 (2019) - [j68]Zhen Chen, Xuhan Liu, Fuyi Li, Chen Li, Tatiana T. Marquez-Lago, André Leier, Tatsuya Akutsu, Geoffrey I. Webb, Dakang Xu, Alexander Ian Smith, Lei Li, Kuo-Chen Chou, Jiangning Song:
Large-scale comparative assessment of computational predictors for lysine post-translational modification sites. Briefings Bioinform. 20(6): 2267-2290 (2019) - [j67]Fuyi Li, Yang Zhang, Anthony W. Purcell, Geoffrey I. Webb, Kuo-Chen Chou, Trevor Lithgow, Chen Li, Jiangning Song:
Positive-unlabelled learning of glycosylation sites in the human proteome. BMC Bioinform. 20(1): 112:1-112:17 (2019) - [j66]Xiaochuan Wang, Chen Li, Fuyi Li, Varun S. Sharma, Jiangning Song, Geoffrey I. Webb:
SIMLIN: a bioinformatics tool for prediction of S-sulphenylation in the human proteome based on multi-stage ensemble-learning models. BMC Bioinform. 20(1): 602:1-602:12 (2019) - [j65]Wilhelmiina Hämäläinen, Geoffrey I. Webb:
A tutorial on statistically sound pattern discovery. Data Min. Knowl. Discov. 33(2): 325-377 (2019) - [j64]Benjamin Lucas, Ahmed Shifaz, Charlotte Pelletier, Lachlan O'Neill, Nayyar Abbas Zaidi, Bart Goethals, François Petitjean, Geoffrey I. Webb:
Proximity Forest: an effective and scalable distance-based classifier for time series. Data Min. Knowl. Discov. 33(3): 607-635 (2019) - [j63]Hualong Yu, Geoffrey I. Webb:
Adaptive online extreme learning machine by regulating forgetting factor by concept drift map. Neurocomputing 343: 141-153 (2019) - [j62]Igor Goldenberg, Geoffrey I. Webb:
Survey of distance measures for quantifying concept drift and shift in numeric data. Knowl. Inf. Syst. 60(2): 591-615 (2019) - [j61]Charlotte Pelletier, Geoffrey I. Webb, François Petitjean:
Temporal Convolutional Neural Network for the Classification of Satellite Image Time Series. Remote. Sens. 11(5): 523 (2019) - [c81]Charlotte Pelletier, Geoffrey I. Webb, François Petitjean:
Deep Learning for the Classification of Sentinel-2 Image Time Series. IGARSS 2019: 461-464 - [c80]Benjamin Lucas, Charlotte Pelletier, Jordi Inglada, Daniel F. Schmidt, Geoffrey I. Webb, François Petitjean:
Exploring Data Quantity Requirements for Domain Adaptation in the Classification of Satellite Image Time Series. MultiTemp 2019: 1-4 - [c79]Charlotte Pelletier, Zehui Ji, Olivier Hagolle, Elizabeth Morse-McNabb, Kathryn Sheffield, Geoffrey I. Webb, François Petitjean:
Using Sentinel-2 Image Time Series to map the State of Victoria, Australia. MultiTemp 2019: 1-4 - [c78]Chang Wei Tan, François Petitjean, Geoffrey I. Webb:
Elastic bands across the path: A new framework and method to lower bound DTW. SDM 2019: 522-530 - [i20]Ahmed Shifaz, Charlotte Pelletier, François Petitjean, Geoffrey I. Webb:
TS-CHIEF: A Scalable and Accurate Forest Algorithm for Time Series Classification. CoRR abs/1906.10329 (2019) - [i19]Hassan Ismail Fawaz, Benjamin Lucas, Germain Forestier, Charlotte Pelletier, Daniel F. Schmidt, Jonathan Weber, Geoffrey I. Webb, Lhassane Idoumghar, Pierre-Alain Muller, François Petitjean:
InceptionTime: Finding AlexNet for Time Series Classification. CoRR abs/1909.04939 (2019) - [i18]Chang Wei Tan, François Petitjean, Eamonn J. Keogh, Geoffrey I. Webb:
Time series classification for varying length series. CoRR abs/1910.04341 (2019) - [i17]Angus Dempster, François Petitjean, Geoffrey I. Webb:
ROCKET: Exceptionally fast and accurate time series classification using random convolutional kernels. CoRR abs/1910.13051 (2019) - 2018
- [j60]Yi An, Jiawei Wang, Chen Li, André Leier, Tatiana T. Marquez-Lago, Jonathan Wilksch, Yang Zhang, Geoffrey I. Webb, Jiangning Song, Trevor Lithgow:
Comprehensive assessment and performance improvement of effector protein predictors for bacterial secretion systems III, IV and VI. Briefings Bioinform. 19(1): 148-161 (2018) - [j59]Huilin Wang, Liubin Feng, Geoffrey I. Webb, Lukasz A. Kurgan, Jiangning Song, Donghai Lin:
Critical evaluation of bioinformatics tools for the prediction of protein crystallization propensity. Briefings Bioinform. 19(5): 838-852 (2018) - [j58]Jiangning Song, Fuyi Li, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Gholamreza Haffari, Kuo-Chen Chou, Geoffrey I. Webb, Robert N. Pike:
PROSPERous: high-throughput prediction of substrate cleavage sites for 90 proteases with improved accuracy. Bioinform. 34(4): 684-687 (2018) - [j57]