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ORCIDKang Ning 0001
Person information
- affiliation: Huazhong University of Science and Technology, Wuhan, China
- affiliation (former): Chinese Academy of Sciences, Qingdao Institute of Bioenergy and Bioprocess Technology, China
- affiliation (former): University of Michigan, Department of Pathology, Ann Arbor, MI, USA
- affiliation: National University of Singapore (NUS)
Other persons with the same name
- Kang Ning 0002
![[0000-0002-9218-6417]](https://dblp.uni-trier.de/img/orcid-mark.12x12.png "0000-0002-9218-6417")
— University of California at Santa Barbara, Department of Electrical and Computer Engineering, CA, USA - Kang Ning 0003 — Guangdong University of Technology, School of Information Engineering, Guangzhou, China
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Journal Articles
- 2023
[j36]Haohong Zhang, Hui Chong, Qingyang Yu, Yuguo Zha, Mingyue Cheng, Kang Ning:
Tracing human life trajectory using gut microbial communities by context-aware deep learning. Briefings Bioinform. 24(1) (2023)- [j35]Wei Xu, Teng Wang, Nan Wang, Haohong Zhang, Yuguo Zha, Lei Ji, Yuwen Chu, Kang Ning:
Artificial intelligence-enabled microbiome-based diagnosis models for a broad spectrum of cancer types. Briefings Bioinform. 24(3) (2023) - [j34]Cheng Chen, Yuguo Zha, Daming Zhu, Kang Ning, Xuefeng Cui:
ContactLib-ATT: A Structure-Based Search Engine for Homologous Proteins. IEEE ACM Trans. Comput. Biol. Bioinform. 20(6): 3421-3429 (2023) - 2022
- [j33]Yuguo Zha, Kang Ning:
Ontology-aware neural network: a general framework for pattern mining from microbiome data. Briefings Bioinform. 23(2) (2022) - [j32]Hui Chong, Yuguo Zha, Qingyang Yu, Mingyue Cheng, Guangzhou Xiong, Nan Wang, Xinhe Huang, Shijuan Huang, Chuqing Sun, Sicheng Wu, Wei-Hua Chen, Luís Pedro Coelho, Kang Ning:
EXPERT: transfer learning-enabled context-aware microbial community classification. Briefings Bioinform. 23(6) (2022) - [j31]Yuguo Zha, Hui Chong, Pengshuo Yang, Kang Ning:
Microbial Dark Matter: from Discovery to Applications. Genom. Proteom. Bioinform. 20(5): 867-881 (2022) - 2021
- [j30]Mo Zhu, Kai Kang, Kang Ning:
Meta-Prism: Ultra-fast and highly accurate microbial community structure search utilizing dual indexing and parallel computation. Briefings Bioinform. 22(1): 557-567 (2021) - [j29]Tao Bai, Xue Zhu, Xiang Zhou, Denise Grathwohl, Pengshuo Yang, Yuguo Zha, Yu Jin, Hui Chong, Qingyang Yu, Nora Isberner, Dongke Wang, Lei Zhang, K. Martin Kortüm, Jun Song, Leo Rasche, Hermann Einsele, Kang Ning, Xiaohua Hou:
Reliable and Interpretable Mortality Prediction With Strong Foresight in COVID-19 Patients: An International Study From China and Germany. Frontiers Artif. Intell. 4: 672050 (2021) - 2020
- [j28]Wang-Lin Liu, Mingyue Cheng, Jinman Li, Peng Zhang, Hang Fan, Qinghe Hu, Maozhen Han, Longxiang Su, Huaiwu He, Yigang Tong, Kang Ning, Yun Long:
Classification of the Gut Microbiota of Patients in Intensive Care Units During Development of Sepsis and Septic Shock. Genom. Proteom. Bioinform. 18(6): 696-707 (2020) - 2019
- [j27]Chongyang Tan, Wei Cui, Xinping Cui, Kang Ning:
Strain-GeMS: optimized subspecies identification from microbiome data based on accurate variant modeling. Bioinform. 35(10): 1789-1791 (2019) - [j26]Pengshuo Yang, Shaojun Yu, Lin Cheng, Kang Ning:
Meta-network: optimized species-species network analysis for microbial communities. BMC Genom. 20(S2) (2019) - [j25]Kang Ning, Yigang Tong:
The Fast Track for Microbiome Research. Genom. Proteom. Bioinform. 17(1): 1-3 (2019) - [j24]Mingyue Cheng, Kang Ning:
Stereotypes About Enterotype: the Old and New Ideas. Genom. Proteom. Bioinform. 17(1): 4-12 (2019) - [j23]Maozhen Han, Melissa Dsouza, Chunyu Zhou, Hongjun Li, Junqian Zhang, Chaoyun Chen, Qi Yao, Chaofang Zhong, Hao Zhou, Jack A. Gilbert, Zhi Wang, Kang Ning:
Agricultural Risk Factors Influence Microbial Ecology in Honghu Lake. Genom. Proteom. Bioinform. 17(1): 76-90 (2019) - 2016
- [j22]Chao Wang, Haicang Zhang, Wei-Mou Zheng, Dong Xu, Jianwei Zhu, Bing Wang, Kang Ning, Shiwei Sun, Shuai Cheng Li, Dongbo Bu:
FALCON@home: a high-throughput protein structure prediction server based on remote homologue recognition. Bioinform. 32(3): 462-464 (2016) - [j21]Gabriel H. Murillo, Na You, Xiaoquan Su, Wei Cui, Muredach P. Reilly, Mingyao Li, Kang Ning, Xinping Cui:
MultiGeMS: detection of SNVs from multiple samples using model selection on high-throughput sequencing data. Bioinform. 32(10): 1486-1492 (2016) - 2015
- [j20]Shiwei Sun, Xuetao Wang, Xin Gao, Lihui Ren, Xiaoquan Su, Dongbo Bu, Kang Ning:
Condensing Raman spectrum for single-cell phenotype analysis. BMC Bioinform. 16(S18): S15 (2015) - [j19]Houjin Zhang, Kang Ning:
The Tara Oceans Project: New Opportunities and Greater Challenges Ahead. Genom. Proteom. Bioinform. 13(5): 275-277 (2015) - [j18]Xiaoquan Su, Xiaojun Wang, Gongchao Jing, Shi Huang, Jian Xu, Kang Ning:
Application of Meta-Mesh on the analysis of microbial communities from human associated-habitats. Quant. Biol. 3(1): 4-18 (2015) - 2014
- [j17]Xiaoquan Su, Xuetao Wang, Gongchao Jing, Kang Ning:
GPU-Meta-Storms: computing the structure similarities among massive amount of microbial community samples using GPU. Bioinform. 30(7): 1031-1033 (2014) - [j16]Peng Yang, Xiaoquan Su, Le Ou-Yang, Hon Nian Chua, Xiaoli Li, Kang Ning:
Microbial community pattern detection in human body habitats via ensemble clustering framework. BMC Syst. Biol. 8(S-4): S7 (2014) - [j15]Qian Zhou, Xiaoquan Su, Gongchao Jing, Kang Ning:
Meta-QC-Chain: Comprehensive and Fast Quality Control Method for Metagenomic Data. Genom. Proteom. Bioinform. 12(1): 52-56 (2014) - [j14]Xinwei Cheng, Xiaohua Chen, Xiaoquan Su, Huanxin Zhao, Maozhen Han, Cunpei Bo, Jian Xu, Hong Bai, Kang Ning:
DNA Extraction Protocol for Biological Ingredient Analysis of Liuwei Dihuang Wan. Genom. Proteom. Bioinform. 12(3): 137-143 (2014) - 2012
- [j13]Na You, Gabriel H. Murillo, Xiaoquan Su, Xiaowei Zeng, Jian Xu, Kang Ning, Shoudong Zhang, Jiankang Zhu, Xinping Cui:
SNP calling using genotype model selection on high-throughput sequencing data. Bioinform. 28(5): 643-650 (2012) - [j12]Xiaoquan Su, Jian Xu, Kang Ning:
Meta-Storms: efficient search for similar microbial communities based on a novel indexing scheme and similarity score for metagenomic data. Bioinform. 28(19): 2493-2501 (2012) - [j11]Xiaoquan Su, Jian Xu, Kang Ning:
Parallel-META: efficient metagenomic data analysis based on high-performance computation. BMC Syst. Biol. 6(S-1): S16 (2012) - 2011
- [j10]Kang Ning, Hoong Kee Ng, Hon Wai Leong:
Analysis of the relationships among Longest Common Subsequences, Shortest Common Supersequences and patterns and its application on pattern discovery in biological sequences. Int. J. Data Min. Bioinform. 5(6): 611-625 (2011) - [j9]Kang Ning, Hon Wai Leong:
The multiple sequence sets: problem and heuristic algorithms. J. Comb. Optim. 22(4): 778-796 (2011) - 2010
- [j8]Sriganesh Srihari, Kang Ning, Hon Wai Leong:
MCL-CAw: a refinement of MCL for detecting yeast complexes from weighted PPI networks by incorporating core-attachment structure. BMC Bioinform. 11: 504 (2010) - [j7]Kang Ning, Hoong Kee Ng, Sriganesh Srihari, Hon Wai Leong, Alexey I. Nesvizhskii:
Examination of the relationship between essential genes in PPI network and hub proteins in reverse nearest neighbor topology. BMC Bioinform. 11: 505 (2010) - [j6]Kang Ning, Alexey I. Nesvizhskii:
The utility of mass spectrometry-based proteomic data for validation of novel alternative splice forms reconstructed from RNA-Seq data: a preliminary assessment. BMC Bioinform. 11(S-11): S14 (2010) - [j5]Kang Ning:
Deposition and extension approach to find longest common subsequence for thousands of long sequences. Comput. Biol. Chem. 34(3): 149-157 (2010) - 2008
- [j4]Hon Nian Chua, Kang Ning, Wing-Kin Sung, Hon Wai Leong, Limsoon Wong:
Using Indirect protein-protein Interactions for protein Complex Prediction. J. Bioinform. Comput. Biol. 6(3): 435-466 (2008) - [j3]Kang Ning, Nan Ye, Hon Wai Leong:
On Preprocessing and Antisymmetry in de novo peptide Sequencing: Improving Efficiency and Accuracy. J. Bioinform. Comput. Biol. 6(3): 467-492 (2008) - 2006
- [j2]Kang Ning, Hon Wai Leong:
Towards a better solution to the shortest common supersequence problem: the deposition and reduction algorithm. BMC Bioinform. 7(S-4) (2006) - [j1]Ket Fah Chong, Kang Ning, Hon Wai Leong, Pavel A. Pevzner:
Modeling and Characterization of Multi-charge Mass Spectra for Peptide Sequencing. J. Bioinform. Comput. Biol. 4(6): 1329-1352 (2006)
Conference and Workshop Papers
- 2021
- [c11]Cheng Chen, Yuguo Zha, Daming Zhu, Kang Ning, Xuefeng Cui:
Hydrogen bonds meet self-attention: all you need for protein structure embedding. BIBM 2021: 12-17 - 2012
- [c10]Wei Fang, Xingzhi Chang, Xiaoquan Su, Jian Xu, Deli Zhang, Kang Ning:
A machine learning framework of functional biomarker discovery for different microbial communities based on metagenomic data. ISB 2012: 106-112 - 2011
- [c9]Xiaoquan Su, Yongzheng Ma, Hongwei Yang, Xingzhi Chang, Kai Nan, Jian Xu, Kang Ning:
An Open-source Collaboration Environment for Metagenomics Research. eScience 2011: 7-14 - 2008
- [c8]Sriganesh Srihari, Hoong Kee Ng, Kang Ning, Hon Wai Leong:
Detecting hubs and quasi cliques in scale-free networks. ICPR 2008: 1-4 - 2007
- [c7]Kang Ning, Ket Fah Chong, Hon Wai Leong:
De Novo Peptide Sequencing for Mass Spectra Based on Multi-Charge Strong Tags. APBC 2007: 287-296 - [c6]Hoong Kee Ng, Kang Ning, Hon Wai Leong:
A New Approach for Similarity Queries of Biological Sequences in Databases. PAKDD 2007: 728-736 - 2006
- [c5]Ket Fah Chong, Kang Ning, Hon Wai Leong, Pavel A. Pevzner:
Characterization of Multi-Charge Mass Spectra for Peptide Sequencing. APBC 2006: 109-119 - [c4]Kang Ning, Hoong Kee Ng, Hon Wai Leong:
Finding Patterns in Biological Sequences by Longest Common Subsequencesand Shortest Common Supersequences. BIBE 2006: 53-60 - [c3]Kang Ning, Hon Wai Leong:
Towards a Better Solution to the Shortest Common Supersequence Problem: A Post. IMSCCS (1) 2006: 84-90 - [c2]Kang Ning, Ket Fah Chong, Hon Wai Leong:
A Database Search Algorithm for Identification of Peptides with Multiple Charges Using Tandem Mass Spectrometry. BioDM 2006: 2-13 - [c1]Kang Ning, Hon Nian Chua:
Automated Identification of Protein Classification and Detection of Annotation Errors in Protein Databases Using Statistical Approaches. KDLL 2006: 123-138
Informal and Other Publications
- 2014
- [i7]Peng Yang, Xiaoquan Su, Le Ou-Yang, Hon Nian Chua, Xiaoli Li, Kang Ning:
Microbial community pattern detection in human body habitats via ensemble clustering framework. CoRR abs/1412.7384 (2014) - 2013
- [i6]Kang Ning, Kwok Pui Choi:
Systematic assessment of the expected length, variance and distribution of Longest Common Subsequences. CoRR abs/1306.4253 (2013) - 2010
- [i5]Kang Ning:
Multiple oligo nucleotide arrays: Methods to reduce manufacture time and cost. CoRR abs/1004.5436 (2010) - 2009
- [i4]Kang Ning:
A Deposition and Post Processing Approach for the Longest Common Subsequence Problem. CoRR abs/0903.2015 (2009) - [i3]Kang Ning, Hoong Kee Ng, Hon Wai Leong:
Analysis of the Relationships among Longest Common Subsequences, Shortest Common Supersequences and Patterns and its application on Pattern Discovery in Biological Sequences. CoRR abs/0903.2310 (2009) - [i2]Kang Ning:
A Pseudo DNA Cryptography Method. CoRR abs/0903.2693 (2009) - [i1]Kang Ning, Hon Wai Leong:
The Distribution and Deposition Algorithm for Multiple Sequences Sets. CoRR abs/0904.1242 (2009)
Coauthor Index
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