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Simon Kasif
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- affiliation: Boston University, USA
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2020 – today
- 2020
- [i4]Simon Kasif:
Artificial Tikkun Olam: AI Can Be Our Best Friend in Building an Open Human-Computer Society. CoRR abs/2010.12015 (2020)
2010 – 2019
- 2016
- [j36]Yi-Chien Chang, Zhenjun Hu, John Rachlin, Brian P. Anton, Simon Kasif, Richard J. Roberts
, Martin Steffen:
COMBREX-DB: an experiment centered database of protein function: knowledge, predictions and knowledge gaps. Nucleic Acids Res. 44(Database-Issue): 330-335 (2016) - 2014
- [i3]Arthur L. Delcher, Adam J. Grove, Simon Kasif, Judea Pearl:
Logarithmic-Time Updates and Queries in Probabilistic Networks. CoRR abs/1408.1479 (2014) - 2011
- [j35]Richard J. Roberts
, Yi-Chien Chang, Zhenjun Hu, John Rachlin, Brian P. Anton, Revonda M. Pokrzywa, Han-Pil Choi, Lina L. Faller, Jyotsna Guleria, Genevieve Housman, Niels Klitgord, Varun Mazumdar, Mark G. McGettrick, Lais Osmani, Rajeswari Swaminathan, Kevin R. Tao, Stanley Letovsky, Dennis Vitkup, Daniel Segrè
, Steven L. Salzberg
, Charles DeLisi, Martin Steffen
, Simon Kasif:
COMBREX: a project to accelerate the functional annotation of prokaryotic genomes. Nucleic Acids Res. 39(Database-Issue): 11-14 (2011) - 2010
- [j34]Antonina Mitrofanova, Samantha Kleinberg, Jane Carlton, Simon Kasif, Bud Mishra:
Predicting malaria interactome classifications from time-course transcriptomic data along the intraerythrocytic developmental cycle. Artif. Intell. Medicine 49(3): 167-176 (2010)
2000 – 2009
- 2009
- [j33]Dikla Dotan-Cohen, Simon Kasif, Avraham A. Melkman
:
Seeing the forest for the trees: using the Gene Ontology to restructure hierarchical clustering. Bioinform. 25(14): 1789-1795 (2009) - [j32]Peter J. Park
, Sek Won Kong
, Toma Tebaldi
, Weil R. Lai, Simon Kasif, Isaac S. Kohane:
Integration of heterogeneous expression data sets extends the role of the retinol pathway in diabetes and insulin resistance. Bioinform. 25(23): 3121-3127 (2009) - 2008
- [j31]Xiaoyu Jiang
, Naoki Nariai, Martin Steffen
, Simon Kasif, Eric D. Kolaczyk:
Integration of relational and hierarchical network information for protein function prediction. BMC Bioinform. 9 (2008) - [j30]John H. Reif, Simon Kasif, Deepak Sherlekar:
Formula dissection: A parallel algorithm for constraint satisfaction. Comput. Math. Appl. 55(6): 1170-1177 (2008) - [c28]Antonina Mitrofanova, Samantha Kleinberg, Jane Carlton, Simon Kasif, Bud Mishra:
Systems Biology via Redescription and Ontologies (III): Protein Classification Using Malaria Parasite's Temporal Transcriptomic Profiles. BIBM 2008: 278-283 - [c27]Xiaoyu Jiang, Naoki Nariai, Martin Steffen, Simon Kasif, David Gold, Eric D. Kolaczyk:
Combining Hierarchical Inference in Ontologies with Heterogeneous Data Sources Improves Gene Function Prediction. BIBM 2008: 411-416 - 2007
- [j29]Dikla Dotan-Cohen, Avraham A. Melkman
, Simon Kasif:
Hierarchical tree snipping: clustering guided by prior knowledge. Bioinform. 23(24): 3335-3342 (2007) - 2006
- [j28]Noga Alon, Vera Asodi, Charles Cantor, Simon Kasif, John Rachlin:
Multi-Node Graphs: A Framework for Multiplexed Biological Assays. J. Comput. Biol. 13(10): 1659-1672 (2006) - 2005
- [j27]Yu Zheng, Brian P. Anton, Richard J. Roberts
, Simon Kasif:
Phylogenetic detection of conserved gene clusters in microbial genomes. BMC Bioinform. 6: 243 (2005) - [j26]John Rachlin, Chunming Ding
, Charles Cantor, Simon Kasif:
MuPlex: multi-objective multiplex PCR assay design. Nucleic Acids Res. 33(Web-Server-Issue): 544-547 (2005) - [j25]Chang-Jiun Wu, Simon Kasif:
GEMS: a web server for biclustering analysis of expression data. Nucleic Acids Res. 33(Web-Server-Issue): 596-599 (2005) - [c26]Joseph D. Szustakowski
, Simon Kasif, Zhiping Weng:
Less is more: towards an optimal universal description of protein folds. ECCB/JBI 2005: 71 - [e1]Satoru Miyano, Jill P. Mesirov, Simon Kasif, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman:
Research in Computational Molecular Biology, 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings. Lecture Notes in Computer Science 3500, Springer 2005, ISBN 3-540-25866-3 [contents] - 2004
- [j24]Nathan O. Stitziel, T. Andrew Binkowski, Yan Yuan Tseng, Simon Kasif, Jie Liang:
topoSNP: a topographic database of non-synonymous single nucleotide polymorphisms with and without known disease association. Nucleic Acids Res. 32(Database-Issue): 520-522 (2004) - [j23]Noga Alon, Richard Beigel, Simon Kasif, Steven Rudich, Benny Sudakov:
Learning a Hidden Matching. SIAM J. Comput. 33(2): 487-501 (2004) - 2003
- [j22]Jie Wu, Simon Kasif, Charles DeLisi:
Identification of functional links between genes using phylogenetic profiles. Bioinform. 19(12): 1524-1530 (2003) - [j21]Yang Su, T. M. Murali, Vladimir Pavlovic
, Michael Schaffer, Simon Kasif:
RankGene: identification of diagnostic genes based on expression data. Bioinform. 19(12): 1578-1579 (2003) - [c25]Stanley Letovsky, Simon Kasif:
Predicting protein function from protein/protein interaction data: a probabilistic approach. ISMB (Supplement of Bioinformatics) 2003: 197-204 - [c24]T. M. Murali, Simon Kasif:
Extracting Conserved Gene Expression Motifs from Gene Expression Data. Pacific Symposium on Biocomputing 2003: 77-88 - 2002
- [j20]Vladimir Pavlovic
, Ashutosh Garg, Simon Kasif:
A Bayesian framework for combining gene predictions. Bioinform. 18(1): 19-27 (2002) - [c23]Noga Alon, Richard Beigel, Simon Kasif, Steven Rudich, Benny Sudakov:
Learning a Hidden Matching. FOCS 2002: 197- - 2001
- [c22]Richard Beigel, Noga Alon, Simon Kasif, Mehmet Serkan Apaydin, Lance Fortnow:
An optimal procedure for gap closing in whole genome shotgun sequencing. RECOMB 2001: 22-30 - 2000
- [j19]Deyou Cai, Arthur L. Delcher, Ben Kao, Simon Kasif:
Modeling splice sites with Bayes networks. Bioinform. 16(2): 152-158 (2000)
1990 – 1999
- 1998
- [j18]Simon Kasif, Steven Salzberg
, David L. Waltz, John Rachlin, David W. Aha:
A Probabilistic Framework for Memory-Based Reasoning. Artif. Intell. 104(1-2): 287-311 (1998) - 1997
- [j17]Simon Kasif:
Towards a Constraint-Based Engineering Framework for Algorithm Design and Application. Constraints An Int. J. 2(1): 75-82 (1997) - 1996
- [j16]Simon Kasif:
Towards a Constraint-Based Engineering Framework for Algorithm Design and Application. ACM Comput. Surv. 28(4es): 66 (1996) - [j15]Arthur L. Delcher, Adam J. Grove, Simon Kasif, Judea Pearl:
Logarithmic-Time Updates and Queries in Probabilistic Networks. J. Artif. Intell. Res. 4: 37-59 (1996) - [j14]David G. Heath, Simon Kasif, S. Rao Kosaraju, Steven Salzberg
, Gregory F. Sullivan:
Learning nested concept classes with limited storage. J. Exp. Theor. Artif. Intell. 8(2): 129-147 (1996) - [c21]Truxton Fulton, Simon Kasif, Steven Salzberg, David L. Waltz:
Local Induction of Decision Trees: Towards Interactive Data Mining. KDD 1996: 14-19 - [i2]Arthur L. Delcher, Adam J. Grove, Simon Kasif, Judea Pearl:
Logarithmic-Time Updates and Queries in Probabilistic Networks. CoRR cs.AI/9602102 (1996) - 1995
- [j13]Arthur L. Delcher, Simon Kasif:
Term Matching on a Mesh-Connected Array of Processors. Ann. Math. Artif. Intell. 14(2-4): 177-186 (1995) - [j12]David L. Waltz, Simon Kasif:
On Reasoning From Data. ACM Comput. Surv. 27(3): 356-359 (1995) - [j11]Steven Salzberg
, Arthur L. Delcher, David G. Heath, Simon Kasif:
Best-Case Results for Nearest-Neighbor Learning. IEEE Trans. Pattern Anal. Mach. Intell. 17(6): 599-608 (1995) - [c20]Truxton Fulton, Simon Kasif, Steven Salzberg:
Efficient Algorithms for Finding Multi-way Splits for Decision Trees. ICML 1995: 244-251 - [c19]Arthur L. Delcher, Adam J. Grove, Simon Kasif, Judea Pearl:
Logarithmic-Time Updates and Queries in Probabilistic Networks. UAI 1995: 116-124 - 1994
- [j10]Simon Kasif, Arthur L. Delcher:
Local Consistency in Parallel Constraint Satisfaction Networks. Artif. Intell. 69(1-2): 307-327 (1994) - [j9]Sreerama K. Murthy, Simon Kasif, Steven Salzberg:
A System for Induction of Oblique Decision Trees. J. Artif. Intell. Res. 2: 1-32 (1994) - [c18]Jonathan Bright, Simon Kasif, Lewis Stiller:
Exploiting Algebraic Structure in Parallel State Space Search. AAAI 1994: 1341-1346 - [c17]John Rachlin, Simon Kasif, Steven Salzberg, David W. Aha:
Towards a Better Understanding of Memory-based Reasoning Systems. ICML 1994: 242-250 - [i1]Sreerama K. Murthy, Simon Kasif, Steven Salzberg:
A System for Induction of Oblique Decision Trees. CoRR abs/cs/9408103 (1994) - 1993
- [j8]Simon Kasif, Saibal Banerjee, Arthur L. Delcher, Gregory F. Sullivan:
Some Results on the Computational Complexity of Symmetric Connectionist Networks. Ann. Math. Artif. Intell. 9(3-4): 327-344 (1993) - [j7]David G. Heath, Simon Kasif:
The Complexity of Finding Minimal Voronoi Covers with Applications to Machine Learning. Comput. Geom. 3: 289-305 (1993) - [c16]Arthur L. Delcher, Simon Kasif, Harry R. Goldberg, William H. Hsu:
Probabilistic Prediction of Protein Secondary Structure Using Causal Networks (Extended Abstract). AAAI 1993: 316-321 - [c15]Sreerama K. Murthy, Simon Kasif, Steven Salzberg, Richard Beigel:
OC1: A Randomized Induction of Oblique Decision Trees. AAAI 1993: 322-327 - [c14]David G. Heath, Simon Kasif, Steven Salzberg:
Induction of Oblique Decision Trees. IJCAI 1993: 1002-1007 - [c13]Arthur L. Delcher, Simon Kasif, Harry R. Goldberg, William H. Hsu:
Protein Secondary-Structure Modeling with Probabilistic Networks. ISMB 1993: 109-117 - [c12]Simon Kasif, Arthur L. Delcher:
Local Consistency in Parallel Constraint-Satisfaction Networks. PPCP 1993: 139-145 - 1992
- [j6]Arthur L. Delcher, Simon Kasif:
Efficient Parallel Term Matching and Anti-Unification. J. Autom. Reason. 9(3): 391-406 (1992) - [c11]Arthur L. Delcher, Simon Kasif:
Improved Decision-Making in Game Trees: Recovering from Pathology. AAAI 1992: 513-518 - 1991
- [c10]Steven Salzberg, Arthur L. Delcher, David G. Heath, Simon Kasif:
Learning with a Helpful Teacher. IJCAI 1991: 705-711 - [c9]David G. Heath, Simon Kasif, S. Rao Kosaraju, Steven Salzberg, Gregory F. Sullivan:
Learning Nested Concept Classes with Limited Storage. IJCAI 1991: 777-782 - 1990
- [j5]Simon Kasif:
On the Parallel Complexity of Discrete Relaxation in Constraint Satisfaction Networks. Artif. Intell. 45(3): 275-286 (1990) - [c8]Arthur L. Delcher, Simon Kasif:
Efficient Parallel Term Matching and Anti-Unification. ICLP 1990: 355-369
1980 – 1989
- 1989
- [j4]Arthur L. Delcher, Simon Kasif:
Some Results on the Complexity of Exploiting Data Dependency in Parallel Logic Programs. J. Log. Program. 6(3): 229-241 (1989) - [c7]Simon Kasif:
Parallel Solutions to Constraint Satisfaction Problems. KR 1989: 180-188 - 1986
- [j3]Simon Kasif:
Control and data driven execution of logic programs: A comparison. Int. J. Parallel Program. 15(1): 73-99 (1986) - [c6]Simon Kasif:
On the Parallel Complexity of Some Constraint Satisfaction Problems. AAAI 1986: 349-353 - 1985
- [c5]Simon Kasif, Jack Minker:
The Intelligent Channel: A Scheme for Result Sharing in Logic Programs. IJCAI 1985: 29-31 - 1983
- [j2]Simon Kasif, Les Kitchen, Azriel Rosenfeld:
A hough transform technique for subgraph isomorphism. Pattern Recognit. Lett. 2(2): 83-88 (1983) - [j1]Simon Kasif, Azriel Rosenfeld:
Pyramid linking is a special case of ISODATA. IEEE Trans. Syst. Man Cybern. 13(1): 84-85 (1983) - [c4]Simon Kasif, Madhur Kohli, Jack Minker:
PRISM - A Parallel Inference System for Problem Solving. Logic Programming Workshop 1983: 123-152 - [c3]Simon Kasif, Madhur Kohli, Jack Minker:
PRISM: A Parallel Inference System for Problem Solving. IJCAI 1983: 544-546 - 1982
- [c2]Norbert Eisinger, Simon Kasif, Jack Minker:
Logic Programming: A Parallel Approach. ICLP 1982: 71-77 - [c1]Upen S. Chakravarthy, Simon Kasif, Madhur Kohli, Jack Minker, D. Cao:
Logic Programming on ZMOB: A Highly Parallel Machine. ICPP 1982: 347-349
Coauthor Index
aka: Steven L. Salzberg
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