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ORCIDAntonio Mucherino
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- affiliation: University of Rennes 1, France
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2020 – today
- 2024
[j30]Germano Abud, Jorge Alencar, Carlile Lavor, Leo Liberti
, Antonio Mucherino:
An impossible combinatorial counting method in distance geometry. Discret. Appl. Math. 354: 83-93 (2024)- 2023
- [c47]Antonio Mucherino, Jung-Hsin Lin:
The Coherent Multi-representation Problem for Protein Structure Determination. DIS 2023: 194-202 - [c46]Antonio Mucherino:
The Coherent Multi-representation Problem with Applications in Structural Biology. IWBBIO (1) 2023: 338-346 - [c45]Simon B. Hengeveld, Antonio Mucherino:
Variable Neighborhood Search in Hamming Space. LSSC 2023: 253-261 - 2022
- [j29]Andrés D. Báez-Sánchez, Carlile Lavor, Antonio Mucherino:
Preface: special issue on optimization in distance geometry. J. Glob. Optim. 83(1): 1-2 (2022) - [c44]Simon B. Hengeveld, Antonio Mucherino:
On the Feasible Regions Delimiting Natural Human Postures in a Novel Skeletal Representation. FedCSIS 2022: 175-179 - [c43]Simon B. Hengeveld, Antonio Mucherino:
A GPU approach to distance geometry in 1D: an implementation in C/CUDA. FedCSIS 2022: 333-336 - [c42]Douglas Soares Gonçalves, Antonio Mucherino:
A Distance Geometry Procedure Using the Levenberg-Marquardt Algorithm and with Applications in Biology but Not only. IWBBIO (2) 2022: 142-152 - 2021
- [j28]Carlile Lavor, Michael Souza, Luiz Mariano Carvalho, Douglas Soares Gonçalves, Antonio Mucherino:
Improving the sampling process in the interval Branch-and-Prune algorithm for the discretizable molecular distance geometry problem. Appl. Math. Comput. 389: 125586 (2021) - [j27]Jérémy Omer, Antonio Mucherino:
The Referenced Vertex Ordering Problem: Theory, Applications, and Solution Methods. Open J. Math. Optim. 2: 1-29 (2021) - [c41]Simon B. Hengeveld, Therese E. Malliavin, J. H. Lin, Leo Liberti, Antonio Mucherino:
A study on the impact of the distance types involved in protein structure determination by NMR. BIBM 2021: 2502-2510 - [c40]Simon B. Hengeveld, Antonio Mucherino:
On the Representation of Human Motions and Distance-based Retargeting. FedCSIS 2021: 181-189 - [c39]Simon B. Hengeveld, F. Plastria, Antonio Mucherino, David A. Pelta:
A Linear Program for Points of Interest Relocation in Adaptive Maps. GSI (2) 2021: 551-559 - [c38]Antonio Mucherino:
binMeta: A New Java Package for Meta-heuristic Searches. LSSC 2021: 242-249 - [i5]Simon B. Hengeveld, N. Rubiano da Silva, Douglas Soares Gonçalves, P. H. Souto Ribeiro, Antonio Mucherino:
Solving the One-dimensional Distance Geometry Problem by Optical Computing. CoRR abs/2105.12118 (2021) - [i4]Germano Abud, Jorge Alencar, Carlile Lavor, Leo Liberti, Antonio Mucherino:
An impossible utopia in distance geometry. CoRR abs/2110.01231 (2021) - 2020
- [j26]Antonio Mucherino, Carlile Lavor:
Preface: Special issue on distances in optimization and graphs dedicated to the memory of Michel Deza. Optim. Lett. 14(2): 269-271 (2020) - [j25]Germano Abud, Jorge Alencar, Carlile Lavor, Leo Liberti, Antonio Mucherino:
The K-discretization and K-incident graphs for discretizable Distance Geometry. Optim. Lett. 14(2): 469-482 (2020) - [j24]Antonio Mucherino, Jérémy Omer, Ludovic Hoyet, Paolo Robuffo Giordano, Franck Multon:
An application-based characterization of dynamical distance geometry problems. Optim. Lett. 14(2): 493-507 (2020) - [c37]Antonio Mucherino:
An Analysis on the Degrees of Freedom of Binary Representations for Solutions to Discretizable Distance Geometry Problems. WCO@FedCSIS 2020: 251-255 - [c36]Antonio Mucherino, Douglas Soares Gonçalves, Leo Liberti, Jung-Hsin Lin, Carlile Lavor, Nelson Maculan:
MD-jeep: a New Release for Discretizable Distance Geometry Problems with Interval Data. FedCSIS 2020: 289-294
2010 – 2019
- 2019
- [j23]Thérèse E. Malliavin, Antonio Mucherino, Carlile Lavor, Leo Liberti:
Systematic Exploration of Protein Conformational Space Using a Distance Geometry Approach. J. Chem. Inf. Model. 59(10): 4486-4503 (2019) - [c35]Antonio Mucherino, Jung-Hsin Lin:
An Efficient Exhaustive Search for the Discretizable Distance Geometry Problem with Interval Data. FedCSIS 2019: 135-141 - [c34]Antonio Mucherino, Jung-Hsin Lin, Douglas Soares Gonçalves:
A Coarse-Grained Representation for Discretizable Distance Geometry with Interval Data. IWBBIO (1) 2019: 3-13 - [c33]Shanfeng Hu, Hubert P. H. Shum, Antonio Mucherino:
DSPP: Deep Shape and Pose Priors of Humans. MIG 2019: 1:1-1:6 - 2018
- [b1]Antonio Mucherino:
On the Discretization of Distance Geometry: Theory, Algorithms and Applications. University of Rennes 1, France, 2018 - [j22]Simon J. L. Billinge, Phillip M. Duxbury, Douglas Soares Gonçalves, Carlile Lavor, Antonio Mucherino:
Recent results on assigned and unassigned distance geometry with applications to protein molecules and nanostructures. Ann. Oper. Res. 271(1): 161-203 (2018) - [j21]Felipe Fidalgo, Douglas Soares Gonçalves, Carlile Lavor, Leo Liberti, Antonio Mucherino:
A symmetry-based splitting strategy for discretizable distance geometry problems. J. Glob. Optim. 71(4): 717-733 (2018) - [c32]Antonio Mucherino, Florian Elain, Ludovic Hoyet, Richard Kulpa:
Feature Selection in Time-Series Motion Databases. FedCSIS 2018: 245-248 - [c31]Zhiguang Liu, Antonio Mucherino, Ludovic Hoyet, Franck Multon:
Surface based motion retargeting by preserving spatial relationship. MIG 2018: 7:1-7:11 - 2017
- [j20]Douglas Soares Gonçalves, Antonio Mucherino, Carlile Lavor, Leo Liberti:
Recent advances on the interval distance geometry problem. J. Glob. Optim. 69(3): 525-545 (2017) - [c30]Antonio Mucherino, Douglas Soares Gonçalves, Antonin Bernardin, Ludovic Hoyet, Franck Multon:
A Distance-Based Approach for Human Posture Simulations. FedCSIS 2017: 441-444 - [c29]Antonio Mucherino, Douglas Soares Gonçalves:
An Approach to Dynamical Distance Geometry. GSI 2017: 821-829 - [c28]Antonin Bernardin, Ludovic Hoyet, Antonio Mucherino, Douglas Soares Gonçalves, Franck Multon:
Normalized Euclidean distance matrices for human motion retargeting. MIG 2017: 15:1-15:6 - 2016
- [j19]Simon J. L. Billinge, Phillip M. Duxbury, Douglas Soares Gonçalves, Carlile Lavor, Antonio Mucherino:
Assigned and unassigned distance geometry: applications to biological molecules and nanostructures. 4OR 14(4): 337-376 (2016) - [j18]Douglas Soares Gonçalves, Antonio Mucherino:
Optimal partial discretization orders for discretizable distance geometry. Int. Trans. Oper. Res. 23(5): 947-967 (2016) - [c27]Stefka Fidanova, Olympia Roeva, Antonio Mucherino, Kristina G. Kapanova:
InterCriteria Analysis of Ant Algorithm with Environment Change for GPS Surveying Problem. AIMSA 2016: 271-278 - [c26]Antonio Mucherino, Warley Gramacho, Jung-Hsin Lin, Carlile Lavor:
A New Approach to the Discretization of Multidimensional Scaling. FedCSIS 2016: 591-599 - 2015
- [j17]Andrea Cassioli, Benjamin Bardiaux, Guillaume Bouvier, Antonio Mucherino, Rafael Alves, Leo Liberti, Michael Nilges, Carlile Lavor, Thérèse E. Malliavin:
An algorithm to enumerate all possible protein conformations verifying a set of distance constraints. BMC Bioinform. 16: 23:1-23:15 (2015) - [j16]Antonio Mucherino, Rosiane de Freitas Rodrigues, Carlile Lavor:
Preface. Discret. Appl. Math. 197: 1-2 (2015) - [c25]Antonio Mucherino, Stefka Fidanova, Maria Ganzha:
Ant Colony Optimization with environment changes: An application to GPS surveying. FedCSIS 2015: 495-500 - [c24]Antonio Mucherino:
A Pseudo de Bruijn Graph Representation for Discretization Orders for Distance Geometry. IWBBIO (1) 2015: 514-523 - [c23]Antonio Mucherino:
Optimal Discretization Orders for Distance Geometry: A Theoretical Standpoint. LSSC 2015: 234-242 - 2014
- [j15]Leo Liberti, Benoît Masson, Jon Lee, Carlile Lavor, Antonio Mucherino:
On the number of realizations of certain Henneberg graphs arising in protein conformation. Discret. Appl. Math. 165: 213-232 (2014) - [j14]Virginia Costa, Antonio Mucherino, Carlile Lavor, Andrea Cassioli, Luiz Mariano Carvalho, Nelson Maculan:
Discretization orders for protein side chains. J. Glob. Optim. 60(2): 333-349 (2014) - [j13]Douglas Soares Gonçalves, Antonio Mucherino:
Discretization orders and efficient computation of cartesian coordinates for distance geometry. Optim. Lett. 8(7): 2111-2125 (2014) - [j12]Leo Liberti, Carlile Lavor, Nelson Maculan, Antonio Mucherino:
Euclidean Distance Geometry and Applications. SIAM Rev. 56(1): 3-69 (2014) - [j11]Jeongyeon Seo, Jae-Kwan Kim, Joonghyun Ryu, Carlile Lavor, Antonio Mucherino, Deok-Soo Kim:
BetaMDGP: Protein Structure Determination Algorithm Based on the Beta-complex. Trans. Comput. Sci. 22: 130-155 (2014) - [c22]Douglas Soares Gonçalves, Antonio Mucherino, Carlile Lavor:
An adaptive branching scheme for the Branch & Prune algorithm applied to Distance Geometry. FedCSIS 2014: 457-463 - 2013
- [j10]Carlile Lavor, Leo Liberti, Antonio Mucherino:
The interval Branch-and-Prune algorithm for the discretizable molecular distance geometry problem with inexact distances. J. Glob. Optim. 56(3): 855-871 (2013) - [c21]Douglas Soares Gonçalves, Antonio Mucherino, Carlile Lavor:
Energy-based Pruning Devices for the BP Algorithm applied to Distance Geometry. FedCSIS 2013: 341-346 - [c20]Antonio Mucherino:
On the Identification of Discretization Orders for Distance Geometry with Intervals. GSI 2013: 231-238 - [c19]Rafael Alves, Andrea Cassioli, Antonio Mucherino, Carlile Lavor, Leo Liberti:
The integration of Clifford Algebra in the iBP algorithm for the DMDGP. IWBBIO 2013: 745-746 - [p3]Leo Liberti, Carlile Lavor, Antonio Mucherino:
The Discretizable Molecular Distance Geometry Problem seems Easier on Proteins. Distance Geometry 2013: 47-60 - [p2]Thérèse E. Malliavin, Antonio Mucherino, Michael Nilges:
Distance Geometry in Structural Biology: New Perspectives. Distance Geometry 2013: 329-350 - [p1]Antonio Mucherino, Leo Liberti:
A VNS-Based Heuristic for Feature Selection in Data Mining. Hybrid Metaheuristics 2013: 353-368 - [e2]Antonio Mucherino, Carlile Lavor, Leo Liberti, Nelson Maculan:
Distance Geometry: Theory, Methods, and Applications. Springer 2013, ISBN 978-1-4614-5127-3 [contents] - 2012
- [j9]Carlile Lavor, Leo Liberti, Nelson Maculan, Antonio Mucherino:
The discretizable molecular distance geometry problem. Comput. Optim. Appl. 52(1): 115-146 (2012) - [j8]Carlile Lavor, Leo Liberti, Nelson Maculan, Antonio Mucherino:
Recent advances on the Discretizable Molecular Distance Geometry Problem. Eur. J. Oper. Res. 219(3): 698-706 (2012) - [j7]Antonio Mucherino, Carlile Lavor, Leo Liberti:
Exploiting Symmetry Properties of the Discretizable molecular Distance Geometry Problem. J. Bioinform. Comput. Biol. 10(3) (2012) - [j6]Carlile Lavor, Jon Lee, Audrey Lee-St. John, Leo Liberti, Antonio Mucherino, Maxim Sviridenko:
Discretization orders for distance geometry problems. Optim. Lett. 6(4): 783-796 (2012) - [j5]Antonio Mucherino, Carlile Lavor, Leo Liberti:
The discretizable distance geometry problem. Optim. Lett. 6(8): 1671-1686 (2012) - [c18]Virginia Costa, Antonio Mucherino, Carlile Lavor, Luiz Mariano Carvalho, Nelson Maculan:
On suitable orders for discretizing Molecular Distance Geometry Problems related to protein side chains. FedCSIS 2012: 379-384 - [c17]Warley Gramacho, Antonio Mucherino, Carlile Lavor, Nelson Maculan:
A Parallel BP Algorithm for the Discretizable Distance Geometry Problem. IPDPS Workshops 2012: 1762-1768 - 2011
- [j4]Leo Liberti, Carlile Lavor, Antonio Mucherino, Nelson Maculan:
Molecular distance geometry methods: from continuous to discrete. Int. Trans. Oper. Res. 18(1): 33-51 (2011) - [j3]Carlile Lavor, Antonio Mucherino, Leo Liberti, Nelson Maculan:
On the computation of protein backbones by using artificial backbones of hydrogens. J. Glob. Optim. 50(2): 329-344 (2011) - [c16]Antonio Mucherino, Carlile Lavor, Leo Liberti:
A symmetry-driven BP algorithm for the Discretizable Molecular Distance Geometry Problem. BIBM Workshops 2011: 390-395 - [c15]Leo Liberti, Benoît Masson, Jon Lee, Carlile Lavor, Antonio Mucherino:
On the Number of Solutions of the Discretizable Molecular Distance Geometry Problem. COCOA 2011: 322-342 - [c14]Leo Liberti, Benoît Masson, Carlile Lavor, Antonio Mucherino:
Branch-and-Prune trees with bounded width. CTW 2011: 189-193 - [c13]Antonio Mucherino, Inken Wohlers, Gunnar W. Klau, Rumen Andonov:
Sparsifying Distance Matrices for Protein-Protein Structure Alignments. CTW 2011: 211-214 - [c12]Antonio Mucherino:
Extending the definition of beta-consistent biclustering for feature selection. FedCSIS 2011: 269-274 - [c11]Antonio Mucherino, Georg Ruß:
Recent Developments in Data Mining and Agriculture. ICDM (Workshops) 2011: 90-98 - [c10]Antonio Mucherino, Martin Fuchs, Xavier Vasseur, Serge Gratton:
Variable Neighborhood Search for Robust Optimization and Applications to Aerodynamics. LSSC 2011: 230-237 - [c9]Antonio Mucherino, Carlile Lavor, Therese E. Malliavin, Leo Liberti, Michael Nilges, Nelson Maculan:
Influence of Pruning Devices on the Solution of Molecular Distance Geometry Problems. SEA 2011: 206-217 - [i3]Leo Liberti, Carlile Lavor, Benoît Masson, Antonio Mucherino:
Polynomial cases of the Discretizable Molecular Distance Geometry Problem. CoRR abs/1103.1264 (2011) - 2010
- [c8]Antonio Mucherino, Carlile Lavor, Leo Liberti, El-Ghazali Talbi:
A parallel version of the Branch & Prune algorithm for the Molecular Distance Geometry Problem. AICCSA 2010: 1-6 - [c7]Carlile Lavor, Leo Liberti, Antonio Mucherino:
On the solution of molecular distance geometry problems with interval data. BIBM Workshops 2010: 77-82 - [c6]Antonio Mucherino, Leo Liberti, Carlile Lavor:
MD-jeep: An Implementation of a Branch and Prune Algorithm for Distance Geometry Problems. ICMS 2010: 186-197 - [c5]Antonio Mucherino, Alejandra Urtubia:
Consistent Biclustering and Applications to Agriculture. ICDM (Workshops) 2010: 105-113 - [i2]Antonio Mucherino, Sonia Cafieri:
A New Heuristic for Feature Selection by Consistent Biclustering. CoRR abs/1003.3279 (2010) - [i1]Leo Liberti, Benoît Masson, Jon Lee, Carlile Lavor, Antonio Mucherino:
On the number of solutions of the discretizable molecular distance geometry problem. CoRR abs/1010.1834 (2010)
2000 – 2009
- 2009
- [j2]Antonio Mucherino, Petraq Papajorgji, Panos M. Pardalos:
A survey of data mining techniques applied to agriculture. Oper. Res. 9(2): 121-140 (2009) - [c4]Antonio Mucherino, Carlile Lavor, Nelson Maculan:
The Molecular Distance Geometry Problem Applied to Protein Conformations. CTW 2009: 337-340 - [c3]Antonio Mucherino, Leo Liberti, Carlile Lavor, Nelson Maculan:
Comparisons between an exact and a metaheuristic algorithm for the molecular distance geometry problem. GECCO 2009: 333-340 - [c2]Carlile Lavor, Antonio Mucherino, Leo Liberti, Nelson Maculan:
Computing artificial backbones of hydrogen atoms in order to discover protein backbones. IMCSIT 2009: 759-764 - [c1]Carlile Lavor, Leo Liberti, Antonio Mucherino, Nelson Maculan:
On a discretizable subclass of instances of the molecular distance geometry problem. SAC 2009: 804-805 - [e1]Sonia Cafieri, Antonio Mucherino, Giacomo Nannicini, Fabien Tarissan, Leo Liberti:
Proceedings of the 8th Cologne-Twente Workshop on Graphs and Combinatorial Optimization, CTW 2009, Paris, France, June 2-4 2009. 2009 [contents] - 2008
- [j1]Antonio Mucherino, Susan Costantini, Daniela di Serafino, Marco D'Apuzzo, Angelo M. Facchiano, Giovanni Colonna:
Understanding the role of the topology in protein folding by computational inverse folding experiments. Comput. Biol. Chem. 32(4): 233-239 (2008)
Coauthor Index
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