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2020 – today
- 2020
[j27]Hebing Chen, Zhuo Zhang, Shuai Jiang
, Ruijiang Li, Wanying Li, Chenghui Zhao, Hao Hong, Xin Huang, Hao Li, Xiaochen Bo:
New insights on human essential genes based on integrated analysis and the construction of the HEGIAP web-based platform. Briefings Bioinform. 21(4): 1397-1410 (2020)- [j26]Lingwei Xie, Song He, Zhongnan Zhang, Kunhui Lin, Xiaochen Bo, Shu Yang, Boyuan Feng, Kun Wan, Kang Yang, Jie Yang, Yufei Ding:
Domain-adversarial multi-task framework for novel therapeutic property prediction of compounds. Bioinform. 36(9): 2848-2855 (2020) - [j25]Hao Hong, Shuai Jiang, Hao Li, Guifang Du, Yu Sun, Huan Tao, Cheng Quan, Chenghui Zhao, Ruijiang Li, Wanying Li, Xiaoyao Yin, Yangchen Huang, Cheng Li, Hebing Chen, Xiaochen Bo:
DeepHiC: A generative adversarial network for enhancing Hi-C data resolution. PLoS Comput. Biol. 16(2) (2020) - [c13]Kanghao Shao, Zhongnan Zhang, Song He, Xiaochen Bo:
DTIGCCN: Prediction of drug-target interactions based on GCN and CNN. ICTAI 2020: 337-342
2010 – 2019
- 2019
- [j24]Zhuo Zhang, Hao Li, Shuai Jiang, Ruijiang Li, Wanying Li, Hebing Chen, Xiaochen Bo:
A survey and evaluation of Web-based tools/databases for variant analysis of TCGA data. Briefings Bioinform. 20(4): 1524-1541 (2019) - [j23]Gaole An, Jiaqi Sun, Chao Ren, Zhangyi Ouyang, Lingyun Zhu, Xiaochen Bo, Shaoliang Peng, Wenjie Shu:
LIVE: a manually curated encyclopedia of experimentally validated interactions of lncRNAs. Database J. Biol. Databases Curation 2019: baz011 (2019) - [j22]Xin Huang, Xudong Gao, Wanying Li, Shuai Jiang, Ruijiang Li, Hao Hong, Chenghui Zhao, Pingkun Zhou, Hebing Chen, Xiaochen Bo, Hao Li:
Stable H3K4me3 is associated with transcription initiation during early embryo development. Bioinform. 35(20): 3931-3936 (2019) - 2018
- [j21]Chensi Cao, Feng Liu, Hai Tan, Deshou Song, Wenjie Shu, Weizhong Li, Yiming Zhou, Xiaochen Bo, Zhi Xie:
Deep Learning and Its Applications in Biomedicine. Genom. Proteom. Bioinform. 16(1): 17-32 (2018) - [c12]Xiaolong Shen, Song He, Minquan Fang, Yuqi Wen, Xiaochen Bo, Yong Dou:
paraSNF: An Parallel Approach for Large-Scale Similarity Network Fusion. ACA 2018: 155-167 - [c11]Kang Yang, Zhongnan Zhang, Song He, Xiaochen Bo:
Prediction of DTIs for high-dimensional and class-imbalanced data based on CGAN. BIBM 2018: 788-791 - [c10]Xiaoping Zheng, Song He, Xinyu Song, Zhongnan Zhang, Xiaochen Bo:
DTI-RCNN: New Efficient Hybrid Neural Network Model to Predict Drug-Target Interactions. ICANN (1) 2018: 104-114 - [i1]Lingwei Xie, Song He, Shu Yang, Boyuan Feng, Kun Wan, Zhongnan Zhang, Xiaochen Bo, Yufei Ding:
Domain-Adversarial Multi-Task Framework for Novel Therapeutic Property Prediction of Compounds. CoRR abs/1810.00867 (2018) - 2017
- [j20]Bite Yang, Feng Liu, Chao Ren, Zhangyi Ouyang, Ziwei Xie, Xiaochen Bo, Wenjie Shu:
BiRen: predicting enhancers with a deep-learning-based model using the DNA sequence alone. Bioinform. 33(13): 1930-1936 (2017) - [j19]Hebing Chen, Shuai Jiang, Zhuo Zhang, Hao Li, Yiming Lu, Xiaochen Bo:
Exploring spatially adjacent TFBS-clustered regions with Hi-C data. Bioinform. 33(17): 2611-2614 (2017) - [j18]Wenjian Xu, Yang Cao, Ziwei Xie, Haochen He, Song He, Hao Hong, Xiaochen Bo, Fei Li:
NFPscanner: a webtool for knowledge-based deciphering of biomedical networks. BMC Bioinform. 18(1): 262:1-262:9 (2017) - [j17]Yiming Lu, Cheng Quan, Hebing Chen, Xiaochen Bo, Chenggang Zhang:
3DSNP: a database for linking human noncoding SNPs to their three-dimensional interacting genes. Nucleic Acids Res. 45(Database-Issue): D643-D649 (2017) - [c9]Lingwei Xie, Zhongnan Zhang, Song He, Xiaochen Bo, Xinyu Song:
Drug - target interaction prediction with a deep-learning-based model. BIBM 2017: 469-476 - 2016
- [j16]Feng Liu, Chao Ren, Hao Li, Pingkun Zhou, Xiaochen Bo, Wenjie Shu:
De novo identification of replication-timing domains in the human genome by deep learning. Bioinform. 32(5): 641-649 (2016) - [j15]Yang Cao, Yuanyuan Wang, Xiaofei Zheng, Fei Li, Xiaochen Bo:
RevEcoR: an R package for the reverse ecology analysis of microbiomes. BMC Bioinform. 17: 294 (2016) - [j14]Song He, Haochen He, Wenjian Xu, Xin Huang, Shuai Jiang, Fei Li, Fuchu He, Xiaochen Bo:
ICM: a web server for integrated clustering of multi-dimensional biomedical data. Nucleic Acids Res. 44(Webserver-Issue): W154-W159 (2016) - 2015
- [j13]Yang Liu, Dafei Xie, Lu Han, Hui Bai, Fei Li, Shengqi Wang, Xiaochen Bo:
EHFPI: a database and analysis resource of essential host factors for pathogenic infection. Nucleic Acids Res. 43(Database-Issue): 946-955 (2015) - [c8]Xiaoyao Yin, Lu Han, Hui Bai, Xiaochen Bo, Yun Bai, Cong Niu, Naiyang Guan, Zhigang Luo:
New insights into the landscape relationships of host response to bacterial pathogens. IJCNN 2015: 1-8 - 2014
- [j12]Ming Ni, Fuqiang Ye, Juanjuan Zhu, Zongwei Li, Shuai Yang, Bite Yang, Lu Han, Yongge Wu, Ying Chen, Fei Li, Shengqi Wang, Xiaochen Bo:
ExpTreeDB: Web-based query and visualization of manually annotated gene expression profiling experiments of human and mouse from GEO. Bioinform. 30(23): 3379-3386 (2014) - [c7]Yifu Luo, Qijun Liu, Wenjian Wu, Fei Li, Xiaochen Bo:
Predicting drug side effects based on link prediction in bipartite network. BMEI 2014: 729-733 - 2013
- [j11]Zhenpeng Li, Xiuliang Cui, Fei Li, Peng Li, Ming Ni, Shengqi Wang, Xiaochen Bo:
Exploring the role of human miRNAs in virus-host interactions using systematic overlap analysis. Bioinform. 29(19): 2375-2379 (2013) - 2011
- [j10]Zhenpeng Li, Fei Li, Ming Ni, Peng Li, Xiaochen Bo, Shengqi Wang:
Characterization the regulation of herpesvirus miRNAs from the view of human protein interaction network. BMC Syst. Biol. 5: 93 (2011) - [c6]Fei Li, Xiuliang Cui, Dafei Xie, Xiaochen Bo, Shengqi Wang:
Topology aware functional similarity of protein interaction networks based on gene ontology. EMBC 2011: 6857-6860 - 2010
- [j9]Fei Li, Peng Li, Wenjian Xu, Yuxing Peng, Xiaochen Bo, Shengqi Wang:
PerturbationAnalyzer: a tool for investigating the effects of concentration perturbation on protein interaction networks. Bioinform. 26(2): 275-277 (2010) - [j8]Guangchuang Yu, Fei Li, Yide Qin, Xiaochen Bo, Yibo Wu, Shengqi Wang:
GOSemSim: an R package for measuring semantic similarity among GO terms and gene products. Bioinform. 26(7): 976-978 (2010)
2000 – 2009
- 2009
- [j7]Wenjie Shu, Ming Ni, Xiaochen Bo, Zhiqiang Zheng, Shengqi Wang:
EvoRSR: an integrated system for exploring evolution of RNA structural robustness. BMC Bioinform. 10 (2009) - [c5]Fei Li, Wenjian Xu, Peng Li, Xiaochen Bo, Yuxing Peng:
Optimizing Reference Gene Set for Inter-Chip Normalization Using Genetic Algorithm. BMEI 2009: 1-4 - [c4]Fei Li, Yuxing Peng, Wenjian Xu, Guangchuang Yu, Peng Li, Xiaochen Bo, Shengqi Wang:
Towards a Comprehensive HBV-Human Interaction Map. IJCBS 2009: 311-314 - [c3]Fei Li, Yuxing Peng, Wenjian Xu, Peng Li, Xiaochen Bo:
Dynamic Propagation Properties of Virus-Host Protein Interaction Network. IJCBS 2009: 491-493 - 2008
- [j6]Wenjie Shu, Xiaochen Bo, Zhiqiang Zheng, Shengqi Wang:
A novel representation of RNA secondary structure based on element-contact graphs. BMC Bioinform. 9 (2008) - 2007
- [j5]Wenjie Shu, Xiaochen Bo, Zhiqiang Zheng, Shengqi Wang:
RSRE: RNA structural robustness evaluator. Nucleic Acids Res. 35(Web-Server-Issue): 314-319 (2007) - 2006
- [j4]Xiaochen Bo, Shaoke Lou, Daochun Sun, Wenjie Shu, Jing Yang, Shengqi Wang:
Selection of antisense oligonucleotides based on multiple predicted target mRNA structures. BMC Bioinform. 7: 122 (2006) - [j3]Wenjie Shu, Xiaochen Bo, Rujia Liu, Dongsheng Zhao, Zhiqiang Zheng, Shengqi Wang:
RDMAS: a web server for RNA deleterious mutation analysis. BMC Bioinform. 7: 404 (2006) - [j2]Xiaochen Bo, Shaoke Lou, Daochun Sun, Jing Yang, Shengqi Wang:
AOBase: a database for antisense oligonucleotides selection and design. Nucleic Acids Res. 34(Database-Issue): 664-667 (2006) - 2005
- [j1]Xiaochen Bo, Shengqi Wang:
TargetFinder: a software for antisense oligonucleotide target site selection based on MAST and secondary structures of target mRNA. Bioinform. 21(8): 1401-1402 (2005) - 2001
- [c2]Xiaochen Bo, Lincheng Shen, Wensen Chang:
Evaluation of the Image Degradation for a Typical Watermarking Algorithm in the Block-DCT Domain. ICICS 2001: 52-61 - [c1]Xiaochen Bo, Lincheng Shen, Wensen Chang:
Sign Correlation Detector for Blind Image Watermarking in the DCT Domain. IEEE Pacific Rim Conference on Multimedia 2001: 780-787
Coauthor Index
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