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2020 – today
- 2023
[j13]Xiao-Ran Zhou
, Sebastian Beier, Dominik Brilhaus, Cristina Martins Rodrigues, Timo Mühlhaus, Dirk von Suchodoletz, Richard M. Twyman, Björn Usadel, Angela Kranz:
DataPLAN: A Web-Based Data Management Plan Generator for the Plant Sciences. Data 8(11): 159 (2023)- [j12]Xenia Specka, Daniel Martini, Claus Weiland, Daniel Arend, Senthold Asseng, Franziska Boehm, Til Feike, Juliane Fluck, David Gackstetter, Aida Gonzales-Mellado, Thomas Hartmann, Jan-Henrik Haunert, Florian Hoedt, Carsten Hoffmann, Patrick König, Matthias Lange, Stephan Lesch, Birte Lindstädt, Gunnar Lischeid, Markus Möller, Uwe Rascher, Jochen Christoph Reif, Markus Schmalzl, Matthias Senft, Ulrike Stahl, Nikolai Svoboda, Björn Usadel, Heidi Webber, Frank Ewert:
FAIRagro: Ein Konsortium in der Nationalen Forschungsdateninfrastruktur (NFDI) für Forschungsdaten in der Agrosystemforschung. Inform. Spektrum 46(1): 24-35 (2023) - [i2]Kathryn Dumschott, Hannah Dörpholz, Marie-Angélique Laporte, Dominik Brilhaus, Andrea Schrader, Björn Usadel, Steffen Neumann, Elizabeth Arnaud, Angela Kranz:
Ontologies for increasing the FAIRness of plant research data. CoRR abs/2309.07129 (2023)
2010 – 2019
- 2019
- [i1]Daniel Wibberg, Bérénice Batut, Peter Belmann, Jochen Blom, Frank Oliver Glöckner, Björn A. Grüning, Nils Hoffmann, Nils Kleinbölting, René Rahn, Maja Rey, Uwe Scholz, Malvika Sharan, Andreas Tauch, Ulrike Trojahn, Björn Usadel, Oliver Kohlbacher:
The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR. F1000Research 8: 1877 (2019) - 2018
- [j11]Marie E. Bolger, Borjana Arsova, Björn Usadel:
Plant genome and transcriptome annotations: from misconceptions to simple solutions. Briefings Bioinform. 19(3): 437-449 (2018) - 2015
- [c4]Anahita Nafissi, Fabio Fiorani, Björn Usadel:
Mapping a database schema to the structure of an existing ontology. ICBO 2015 - [c3]Markus Joppich, Dirk Schmidl, Anthony M. Bolger, Torsten W. Kuhlen, Björn Usadel:
PAGANtec: OpenMP Parallel Error Correction for Next-Generation Sequencing Data. IWOMP 2015: 3-17 - 2014
- [j10]Anthony M. Bolger, Marc Lohse, Björn Usadel:
Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinform. 30(15): 2114-2120 (2014) - [j9]Ziva Ramsak, Spela Baebler, Ana Rotter, Matej Korbar, Igor Mozetic, Björn Usadel, Kristina Gruden:
GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology. Nucleic Acids Res. 42(Database-Issue): 1167-1175 (2014) - 2013
- [j8]Jing-Woei Li, Dan M. Bolser, Magnus Manske, Federico Manuel Giorgi, Nikolay Vyahhi, Björn Usadel, Bernardo J. Clavijo, Ting-Fung Chan, Nathalie Wong, Daniel R. Zerbino, Maria Victoria Schneider:
The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability. Briefings Bioinform. 14(5): 548-555 (2013) - 2012
- [j7]Jing-Woei Li, Keith Robison, Marcel Martin, Andreas Sjödin, Björn Usadel, Matthew Young, Eric C. Olivares, Dan M. Bolser:
The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis. Nucleic Acids Res. 40(Database-Issue): 1313-1317 (2012) - [j6]Marc Lohse, Anthony M. Bolger, Axel Nagel, Alisdair R. Fernie, John E. Lunn, Mark Stitt, Björn Usadel:
RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics. Nucleic Acids Res. 40(Web-Server-Issue): 622-627 (2012) - 2011
- [c2]Axel Nagel, Marc Lohse, Anthony M. Bolger, Mark Stitt, Björn Usadel:
Visualizing large, high-throughput datasets based on the cognitive representation of biological pathways. Human Vision and Electronic Imaging 2011: 78650H - 2010
- [j5]Federico M. Giorgi, Anthony M. Bolger, Marc Lohse, Björn Usadel:
Algorithm-driven Artifacts in median polish summarization of Microarray data. BMC Bioinform. 11: 553 (2010)
2000 – 2009
- 2008
- [c1]Martin Gebser, Torsten Schaub, Sven Thiele, Björn Usadel, Philippe Veber:
Detecting Inconsistencies in Large Biological Networks with Answer Set Programming. ICLP 2008: 130-144 - 2007
- [j4]Marc Strickert, Nese Sreenivasulu, Björn Usadel, Udo Seiffert:
Correlation-maximizing surrogate gene space for visual mining of gene expression patterns in developing barley endosperm tissue. BMC Bioinform. 8 (2007) - 2006
- [j3]Björn Usadel, Axel Nagel, Dirk Steinhauser, Yves Gibon, Oliver E. Bläsing, Henning Redestig, Nese Sreenivasulu, Leonard Krall, Matthew A. Hannah, Fabien Poree, Alisdair R. Fernie, Mark Stitt:
PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments. BMC Bioinform. 7: 535 (2006) - 2005
- [j2]Joachim Kopka, Nicolas Schauer, Stephan Krueger, Claudia Birkemeyer, Björn Usadel, Eveline Bergmüller, Peter Dörmann, Wolfram Weckwerth, Yves Gibon, Mark Stitt, Lothar Willmitzer, Alisdair R. Fernie, Dirk Steinhauser:
GMD@CSB.DB: the Golm Metabolome Database. Bioinform. 21(8): 1635-1638 (2005) - 2004
- [j1]Dirk Steinhauser, Björn Usadel, Alexander Lüdemann, Oliver Thimm, Joachim Kopka:
CSB.DB: a comprehensive systems-biology database. Bioinform. 20(18): 3647-3651 (2004)
Coauthor Index
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